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Single-cell TCR sequencing of gammadelta and CD8+ alphabeta T cells in celiac disease

Paired single-cell sequencing dataset of T-cell receptors from both treated and untreated celiac patients. (Amplicon sequencing, paired-end fastq files).

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Policy for the use of the dataset(s) from single-cell sequencing of gammadelta and alphabeta T cells in celiac disease.

DATA ACCESS AGREEMENT These terms and conditions govern access to the managed access datasets (details of which are set out in Appendix I) to which the User Institution has requested access. The User Institution agrees to be bound by these terms and conditions. Definitions Authorised Personnel: The individuals at the User Institution to whom KGJ Coeliac Disease Reasearch Centre grants access to the Data. This includes the User, the individuals listed in Appendix II and any other individuals for whom the User Institution subsequently requests access to the Data. Details of the initial Authorised Personnel are set out in Appendix II. Data: The managed access datasets to which the User Institution has requested access. Data Producers: KGJ Coeliac Disease Reasearch Centre and the collaborators listed in Appendix I responsible for the development, organisation, and oversight of these Data. External Collaborator: A collaborator of the User, working for an institution other than the User Institution. Project: The project for which the User Institution has requested access to these Data. A description of the Project is set out in Appendix II. Publications: Includes, without limitation, articles published in print journals, electronic journals, reviews, books, posters and other written and verbal presentations of research. Research Participant: An individual whose data form part of these Data. Research Purposes: Shall mean research that is seeking to advance the understanding of genetics and genomics, including the treatment of disorders, and work on statistical methods that may be applied to such research. User: The principal investigator for the Project. User Institution(s): The Institution that has requested access to the Data. XXXXX: Your Institution details here 1. The User Institution agrees to only use these Data for the purpose of the Project (described in Appendix II) and only for Research Purposes. The User Institution further agrees that it will only use these Data for Research Purposes which are within the limitations (if any) set out in Appendix I. 2. The User Institution agrees to preserve, at all times, the confidentiality of these Data. In particular, it undertakes not to use, or attempt to use these Data to compromise or otherwise infringe the confidentiality of information on Research Participants. Without prejudice to the generality of the foregoing, the User Institution agrees to use at least the measures set out in Appendix I to protect these Data. 3. The User Institution agrees to protect the confidentiality of Research Participants in any research papers or publications that they prepare by taking all reasonable care to limit the possibility of identification. 4. The User Institution agrees not to link or combine these Data to other information or archived data available in a way that could re-identify the Research Participants, even if access to that data has been formally granted to the User Institution or is freely available without restriction. 5. The User Institution agrees only to transfer or disclose these Data, in whole or part, or any material derived from these Data, to the Authorised Personnel. Should the User Institution wish to share these Data with an External Collaborator, the External Collaborator must complete a separate application for access to these Data. 6. The User Institution agrees that the Data Producers, and all other parties involved in the creation, funding or protection of these Data: a) make no warranty or representation, express or implied as to the accuracy, quality or comprehensiveness of these Data; b) exclude to the fullest extent permitted by law all liability for actions, claims, proceedings, demands, losses (including but not limited to loss of profit), costs, awards damages and payments made by the Recipient that may arise (whether directly or indirectly) in any way whatsoever from the Recipient’s use of these Data or from the unavailability of, or break in access to, these Data for whatever reason and; c) bear no responsibility for the further analysis or interpretation of these Data. 7. The User Institution agrees to follow the Fort Lauderdale Guidelines (http://www.wellcome.ac.uk/stellent/groups/corporatesite/@policy_communications/documents/web_document/wtd003207.pdf ) and the Toronto Statement (http://www.nature.com/nature/journal/v461/n7261/full/461168a.html). This includes but is not limited to recognising the contribution of the Data Producers and including a proper acknowledgement in all reports or publications resulting from the use of these Data. 8. The User Institution agrees to follow the Publication Policy in Appendix III. This includes respecting the moratorium period for the Data Producers to publish the first peer-reviewed report describing and analysing these Data. 9. The User Institution agrees not to make intellectual property claims on these Data and not to use intellectual property protection in ways that would prevent or block access to, or use of, any element of these Data, or conclusion drawn directly from these Data. 10. The User Institution can elect to perform further research that would add intellectual and resource capital to these data and decide to obtain intellectual property rights on these downstream discoveries. In this case, the User Institution agrees to implement licensing policies that will not obstruct further research and to follow the U.S. National Institutes of Health Best Practices for the Licensing of Genomic Inventions (2005) (https://www.icgc.org/files/daco/NIH_BestPracticesLicensingGenomicInventions_2005_en.pdf ) in conformity with the Organisation for Economic Co-operation and Development Guidelines for the Licensing of the Genetic Inventions (2006) (http://www.oecd.org/science/biotech/36198812.pdf ). 11. The User Institution agrees to destroy/discard the Data held, once it is no longer used for the Project, unless obliged to retain the data for archival purposes in conformity with audit or legal requirements. 12. The User Institution will notify KGJ Coeliac Disease Reasearch Centre within 30 days of any changes or departures of Authorised Personnel. 13. The User Institution will notify KGJ Coeliac Disease Reasearch Centre prior to any significant changes to the protocol for the Project. 14. The User Institution will notify KGJ Coeliac Disease Reasearch Centre as soon as it becomes aware of a breach of the terms or conditions of this agreement. 15. KGJ Coeliac Disease Reasearch Centre may terminate this agreement by written notice to the User Institution. If this agreement terminates for any reason, the User Institution will be required to destroy any Data held, including copies and backup copies. This clause does not prevent the User Institution from retaining these data for archival purpose in conformity with audit or legal requirements. 16. The User Institution accepts that it may be necessary for the Data Producers to alter the terms of this agreement from time to time. As an example, this may include specific provisions relating to the Data required by Data Producers other than KGJ Coeliac Disease Reasearch Centre. In the event that changes are required, the Data Producers or their appointed agent will contact the User Institution to inform it of the changes and the User Institution may elect to accept the changes or terminate the agreement. 17. If requested, the User Institution will allow data security and management documentation to be inspected to verify that it is complying with the terms of this agreement. 18. The User Institution agrees to distribute a copy of these terms to the Authorised Personnel. The User Institution will procure that the Authorised Personnel comply with the terms of this agreement. 19. This agreement (and any dispute, controversy, proceedings or claim of whatever nature arising out of this agreement or its formation) shall be construed, interpreted and governed by the laws of Norway and shall be subject to the exclusive jurisdiction of Norwegian courts.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001004484 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00004041793 fastq.gz 1.3 kB
EGAF00004041794 fastq.gz 1.3 kB
EGAF00004041795 fastq.gz 1.3 kB
EGAF00004041796 fastq.gz 1.3 kB
EGAF00004041797 fastq.gz 1.3 kB
EGAF00004041798 fastq.gz 1.3 kB
EGAF00004041799 fastq.gz 1.3 kB
EGAF00004041800 fastq.gz 1.3 kB
EGAF00004041801 fastq.gz 1.3 kB
EGAF00004041802 fastq.gz 1.3 kB
EGAF00004041803 fastq.gz 1.3 kB
EGAF00004041804 fastq.gz 1.3 kB
EGAF00004041805 fastq.gz 1.3 kB
EGAF00004041806 fastq.gz 1.3 kB
EGAF00004041807 fastq.gz 1.3 kB
EGAF00004041808 fastq.gz 1.3 kB
EGAF00004041811 fastq.gz 1.3 kB
EGAF00004041812 fastq.gz 1.3 kB
EGAF00004041813 fastq.gz 1.3 kB
EGAF00004041814 fastq.gz 1.3 kB
EGAF00004041815 fastq.gz 1.3 kB
EGAF00004041816 fastq.gz 1.3 kB
EGAF00004041817 fastq.gz 1.3 kB
EGAF00004041818 fastq.gz 1.3 kB
EGAF00004041821 fastq.gz 1.3 kB
EGAF00004041822 fastq.gz 1.3 kB
EGAF00004041823 fastq.gz 1.3 kB
EGAF00004041824 fastq.gz 1.3 kB
EGAF00004041825 fastq.gz 1.3 kB
EGAF00004041826 fastq.gz 1.3 kB
EGAF00004041827 fastq.gz 1.3 kB
EGAF00004041828 fastq.gz 1.3 kB
EGAF00004041831 fastq.gz 1.3 kB
EGAF00004041832 fastq.gz 1.3 kB
EGAF00004041835 fastq.gz 1.3 kB
EGAF00004041836 fastq.gz 1.3 kB
EGAF00004041837 fastq.gz 1.3 kB
EGAF00004041838 fastq.gz 1.3 kB
EGAF00004041839 fastq.gz 1.3 kB
EGAF00004041840 fastq.gz 1.3 kB
EGAF00004041841 fastq.gz 1.3 kB
EGAF00004041842 fastq.gz 1.3 kB
EGAF00004041843 fastq.gz 1.3 kB
EGAF00004041844 fastq.gz 1.3 kB
EGAF00004041845 fastq.gz 1.3 kB
EGAF00004041846 fastq.gz 1.3 kB
EGAF00004041847 fastq.gz 1.3 kB
EGAF00004041848 fastq.gz 1.3 kB
EGAF00004041849 fastq.gz 1.3 kB
EGAF00004041850 fastq.gz 1.3 kB
EGAF00004041851 fastq.gz 1.3 kB
EGAF00004041852 fastq.gz 1.3 kB
EGAF00004041853 fastq.gz 1.3 kB
EGAF00004041854 fastq.gz 1.3 kB
EGAF00004041855 fastq.gz 1.3 kB
EGAF00004041856 fastq.gz 1.3 kB
EGAF00004041857 fastq.gz 1.3 kB
EGAF00004041858 fastq.gz 1.3 kB
EGAF00004041859 fastq.gz 1.3 kB
EGAF00004041860 fastq.gz 1.3 kB
EGAF00004041861 fastq.gz 1.3 kB
EGAF00004041862 fastq.gz 1.3 kB
EGAF00004041863 fastq.gz 1.3 kB
EGAF00004041864 fastq.gz 1.3 kB
EGAF00004041865 fastq.gz 1.3 kB
EGAF00004041866 fastq.gz 1.3 kB
EGAF00004041867 fastq.gz 1.3 kB
EGAF00004041868 fastq.gz 1.3 kB
EGAF00004041869 fastq.gz 1.3 kB
EGAF00004041870 fastq.gz 1.3 kB
EGAF00004041871 fastq.gz 1.3 kB
EGAF00004041872 fastq.gz 1.3 kB
EGAF00004041873 fastq.gz 1.3 kB
EGAF00004041874 fastq.gz 1.3 kB
EGAF00004041875 fastq.gz 1.3 kB
EGAF00004041876 fastq.gz 1.3 kB
EGAF00004041877 fastq.gz 1.3 kB
EGAF00004041878 fastq.gz 1.3 kB
EGAF00004041879 fastq.gz 1.3 kB
EGAF00004041880 fastq.gz 1.3 kB
EGAF00004041881 fastq.gz 1.3 kB
EGAF00004041882 fastq.gz 1.3 kB
EGAF00004041883 fastq.gz 1.3 kB
EGAF00004041884 fastq.gz 1.3 kB
EGAF00004041885 fastq.gz 1.3 kB
EGAF00004041886 fastq.gz 1.3 kB
EGAF00004041887 fastq.gz 1.3 kB
EGAF00004041888 fastq.gz 1.3 kB
EGAF00004041889 fastq.gz 1.3 kB
EGAF00004041890 fastq.gz 1.3 kB
EGAF00004041891 fastq.gz 1.3 kB
EGAF00004041892 fastq.gz 1.3 kB
EGAF00004041893 fastq.gz 1.3 kB
EGAF00004041894 fastq.gz 1.3 kB
EGAF00004041895 fastq.gz 1.3 kB
EGAF00004041896 fastq.gz 1.3 kB
EGAF00004041897 fastq.gz 1.3 kB
EGAF00004041898 fastq.gz 1.3 kB
EGAF00004041899 fastq.gz 1.3 kB
EGAF00004041900 fastq.gz 1.3 kB
EGAF00004041901 fastq.gz 1.3 kB
EGAF00004041902 fastq.gz 1.3 kB
EGAF00004041903 fastq.gz 1.3 kB
EGAF00004041904 fastq.gz 1.3 kB
EGAF00004041905 fastq.gz 1.3 kB
EGAF00004041906 fastq.gz 1.3 kB
EGAF00004041907 fastq.gz 1.3 kB
EGAF00004041908 fastq.gz 1.3 kB
EGAF00004041909 fastq.gz 1.3 kB
EGAF00004041910 fastq.gz 1.3 kB
EGAF00004041911 fastq.gz 1.3 kB
EGAF00004041912 fastq.gz 1.3 kB
EGAF00004041913 fastq.gz 1.3 kB
EGAF00004041914 fastq.gz 1.3 kB
EGAF00004041915 fastq.gz 1.3 kB
EGAF00004041916 fastq.gz 1.3 kB
116 Files (149.4 kB)