About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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PopCol 16S gut microbiome sequencing

PopCol is a cohort study in Stockholm, Sweden that includes a data-rich set of individuals with data available from bowel symptoms questionnaires, gastroenterology visits and biospecimens (genotype and 16S sequencing from blood and stool samples, respectively). Genotyping was carried out using the Illumina HumanOmniExpressExome-8v1 arrays at the SciLifeLab NGI facility in Uppsala, Sweden. Fecal DNA was extracted from samples kept at -80°C using Qiagen 5 QIAamp DNA Stool Mini Kits and analyzed using 16S rRNA gene amplicon sequencing (in the V1-V2 hypervariable region). This was performed on the Illumina MiSeq platform at the Institute of Clinical Molecular Biology (IKMB) in Kiel, Germany. Of these, six PopCol participants were PPI users and 12 used antibiotics. The study was approved by the local Committee of Research Ethics (Forskningskommitté Syd) at Karolinska Institutet, Stockholm, in November 2001. Written informed consent was obtained from all participants

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PopCol 16S data access

Data is available for non-commercial, research purpose via request in Google Forms: https://forms.gle/GGuxbTUq6iewFrif7

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001004869 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF00005103490 1616955083486 26.7 MB
EGAF00005103491 1616956176409 35.0 MB
EGAF00005103492 1616954820682 24.2 MB
EGAF00005103493 1616955707539 31.5 MB
EGAF00005103494 1616954379096 19.6 MB
EGAF00005103495 1616955322297 25.7 MB
EGAF00005103496 1616954968436 25.0 MB
EGAF00005103497 1616955618607 32.5 MB
EGAF00005103498 1616954820682 19.8 MB
EGAF00005103499 1616954968436 25.6 MB
EGAF00005103500 1616954820682 20.4 MB
EGAF00005103501 1616955196204 25.9 MB
EGAF00005103502 1616954262704 17.9 MB
EGAF00005103503 1616954820682 23.2 MB
EGAF00005103504 1616954262704 14.2 MB
EGAF00005103505 1616954379096 18.1 MB
EGAF00005103506 1616954148249 15.6 MB
EGAF00005103507 1616954820682 21.1 MB
EGAF00005103508 1616953941086 14.8 MB
EGAF00005103509 1616954424004 19.7 MB
EGAF00005103510 1616954820682 21.4 MB
EGAF00005103511 1616955260176 28.9 MB
EGAF00005103512 1616954820682 21.2 MB
EGAF00005103513 1616955260176 27.9 MB
EGAF00005103514 1616955381317 28.3 MB
EGAF00005103515 1616956032482 36.8 MB
EGAF00005103516 1616954820682 22.9 MB
EGAF00005103517 1616955381317 29.9 MB
EGAF00005103518 1616954820682 18.8 MB
EGAF00005103519 1616954903632 25.1 MB
EGAF00005103520 1616953829593 13.5 MB
EGAF00005103521 1616954379096 17.9 MB
EGAF00005103522 1616953644768 12.0 MB
EGAF00005103523 1616954148249 16.1 MB
EGAF00005103524 1616954424004 19.9 MB
EGAF00005103525 1616954968436 25.7 MB
EGAF00005103526 1616954262704 17.3 MB
EGAF00005103527 1616954820682 22.8 MB
EGAF00005103528 1616955083486 26.4 MB
EGAF00005103529 1616955795907 34.7 MB
EGAF00005103530 1616954968436 24.7 MB
EGAF00005103531 1616955523878 31.8 MB
EGAF00005103532 1616954820682 23.3 MB
EGAF00005103533 1616955523878 31.2 MB
EGAF00005103534 1616954262704 16.0 MB
EGAF00005103535 1616954820682 20.4 MB
EGAF00005103536 1616954148249 16.4 MB
EGAF00005103537 1616954968436 21.1 MB
EGAF00005103538 1616953877268 13.8 MB
EGAF00005103539 1616954820682 17.5 MB
EGAF00005103540 1616954262704 17.5 MB
EGAF00005103541 1616954820682 22.7 MB
EGAF00005103542 1616954820682 21.8 MB
EGAF00005103543 1616955196204 28.1 MB
EGAF00005103544 1616955976149 35.6 MB
EGAF00005103545 1616956218024 38.2 MB
EGAF00005103546 1616954262704 16.5 MB
EGAF00005103547 1616954820682 21.7 MB
EGAF00005103548 1616954262704 18.4 MB
EGAF00005103549 1616954820682 24.1 MB
EGAF00005103550 1616954069555 15.8 MB
EGAF00005103551 1616954820682 20.8 MB
EGAF00005103552 1616954148249 16.9 MB
EGAF00005103553 1616954820682 22.2 MB
EGAF00005103554 1616954424004 17.4 MB
EGAF00005103555 1616954820682 23.0 MB
EGAF00005103556 1616953159627 8.8 MB
EGAF00005103557 1616953644768 11.8 MB
EGAF00005103558 1616954820682 17.3 MB
EGAF00005103559 1616954820682 22.7 MB
EGAF00005103560 1616953829593 13.3 MB
EGAF00005103561 1616954262704 17.1 MB
EGAF00005103562 1616954820682 23.7 MB
EGAF00005103563 1616955618607 31.7 MB
EGAF00005103564 1616954379096 19.0 MB
EGAF00005103565 1616954903632 24.9 MB
EGAF00005103566 1616954820682 22.2 MB
EGAF00005103567 1616955322297 29.4 MB
EGAF00005103568 1616954903632 24.6 MB
EGAF00005103569 1616955618607 32.5 MB
EGAF00005103570 1616954262704 18.2 MB
EGAF00005103571 1616954820682 23.9 MB
EGAF00005103572 1616954424004 20.0 MB
EGAF00005103573 1616955144184 26.2 MB
EGAF00005103574 1616955144182 23.5 MB
EGAF00005103575 1616955707538 30.8 MB
EGAF00005103576 1616954820682 20.1 MB
EGAF00005103577 1616955260176 27.0 MB
EGAF00005103578 1616954820682 21.6 MB
EGAF00005103579 1616955196204 28.2 MB
EGAF00005103580 1616954820682 22.2 MB
EGAF00005103581 1616955523878 29.4 MB
EGAF00005103582 1616954820682 20.7 MB
EGAF00005103583 1616955260176 27.2 MB
EGAF00005103584 1616954262704 18.2 MB
EGAF00005103585 1616954820682 24.1 MB
EGAF00005103586 1616954820682 24.3 MB
EGAF00005103587 1616955618607 32.2 MB
EGAF00005103588 1616953877268 14.1 MB
EGAF00005103589 1616954379096 18.6 MB
EGAF00005103590 1616954379096 18.5 MB
EGAF00005103591 1616954903632 24.2 MB
EGAF00005103592 1616953829593 13.3 MB
EGAF00005103593 1616954262704 17.9 MB
EGAF00005103594 1616955083486 18.2 MB
EGAF00005103595 1616954820682 23.9 MB
EGAF00005103596 1616954262704 17.6 MB
EGAF00005103597 1616954820682 24.0 MB
EGAF00005103598 1616954148249 16.9 MB
EGAF00005103599 1616954820682 22.0 MB
EGAF00005103600 1616954820682 19.0 MB
EGAF00005103601 1616954968436 25.1 MB
EGAF00005103602 1616953761401 12.0 MB
EGAF00005103603 1616954069555 15.8 MB
EGAF00005103604 1616953644768 11.9 MB
EGAF00005103605 1616954069555 15.5 MB
EGAF00005103606 1616953877268 13.8 MB
EGAF00005103607 1616954262704 17.7 MB
EGAF00005103608 1616954820682 21.1 MB
EGAF00005103609 1616955144182 27.6 MB
EGAF00005103610 1616954820682 22.6 MB
EGAF00005103611 1616955446900 30.2 MB
EGAF00005103612 1616954820682 23.3 MB
EGAF00005103613 1616955446900 30.8 MB
EGAF00005103614 1616954262704 18.3 MB
EGAF00005103615 1616954820682 24.1 MB
EGAF00005103616 1616954262704 18.2 MB
EGAF00005103617 1616954903632 24.6 MB
EGAF00005103618 1616954903632 17.5 MB
EGAF00005103619 1616954820682 22.6 MB
EGAF00005103620 1616954820682 20.8 MB
EGAF00005103621 1616955083486 26.5 MB
EGAF00005103622 1616955707538 33.4 MB
EGAF00005103623 1616955861890 35.5 MB
EGAF00005103624 1616955795907 33.8 MB
EGAF00005103625 1616955920256 36.4 MB
EGAF00005103626 1616956899098 43.6 MB
EGAF00005103627 1616956691492 46.8 MB
EGAF00005103628 1616956691492 46.7 MB
EGAF00005103629 1616956947044 50.6 MB
EGAF00005103630 1616957540859 57.9 MB
EGAF00005103631 1616957916034 61.7 MB
EGAF00005103632 1616955083486 25.3 MB
EGAF00005103633 1616955144182 27.0 MB
EGAF00005103634 1616955446900 29.9 MB
EGAF00005103635 1616955707538 31.9 MB
EGAF00005103636 1616956176409 36.5 MB
EGAF00005103637 1616956176409 38.7 MB
EGAF00005103638 1616954903632 24.5 MB
EGAF00005103639 1616955083486 26.5 MB
EGAF00005103640 1616955707539 33.5 MB
EGAF00005103641 1616955920256 35.2 MB
EGAF00005103642 1616955144182 25.9 MB
EGAF00005103643 1616955322297 27.5 MB
EGAF00005103644 1616956399039 42.7 MB
EGAF00005103645 1616956691492 45.9 MB
EGAF00005103646 1616955920256 36.4 MB
EGAF00005103647 1616956176409 39.8 MB
EGAF00005103648 1616955196204 28.3 MB
EGAF00005103649 1616955381317 30.2 MB
EGAF00005103650 1616955144182 28.0 MB
EGAF00005103651 1616955322297 29.9 MB
EGAF00005103652 1616955144182 27.7 MB
EGAF00005103653 1616955381317 30.0 MB
EGAF00005103654 1616955523878 31.8 MB
EGAF00005103655 1616955795907 34.3 MB
EGAF00005103656 1616955446900 30.5 MB
EGAF00005103657 1616955618607 32.5 MB
EGAF00005103658 1616955446900 31.1 MB
EGAF00005103659 1616955707539 33.2 MB
EGAF00005103660 1616957012930 50.9 MB
EGAF00005103661 1616957433069 54.7 MB
EGAF00005103662 1616954968436 25.3 MB
EGAF00005103663 1616955083486 26.8 MB
EGAF00005103664 1616955196204 28.1 MB
EGAF00005103665 1616955446900 30.2 MB
EGAF00005103666 1616954968436 25.3 MB
EGAF00005103667 1616955322297 27.3 MB
EGAF00005103668 1616955795907 34.6 MB
EGAF00005103669 1616956032482 37.4 MB
EGAF00005103670 1616955976149 36.7 MB
EGAF00005103671 1616956176409 39.3 MB
EGAF00005103672 1616955920256 36.1 MB
EGAF00005103673 1616956176409 38.9 MB
EGAF00005103674 1616954424004 19.8 MB
EGAF00005103675 1616954820682 21.0 MB
EGAF00005103676 1616954968436 25.6 MB
EGAF00005103677 1616955381317 27.2 MB
EGAF00005103678 1616955260176 27.6 MB
EGAF00005103679 1616955260176 29.1 MB
EGAF00005103680 1616954820682 22.7 MB
EGAF00005103681 1616954968436 24.5 MB
EGAF00005103682 1616955795907 34.4 MB
EGAF00005103683 1616955976149 37.0 MB
EGAF00005103684 1616955707538 33.2 MB
EGAF00005103685 1616955861890 35.3 MB
EGAF00005103686 1616954820682 22.7 MB
EGAF00005103687 1616954968436 24.2 MB
EGAF00005103688 1616956096280 38.0 MB
EGAF00005103689 1616956352711 41.1 MB
EGAF00005103690 1616955083486 26.8 MB
EGAF00005103691 1616955260176 28.7 MB
EGAF00005103692 1616955260176 28.9 MB
EGAF00005103693 1616955618607 30.9 MB
EGAF00005103694 1616955795907 29.7 MB
EGAF00005103695 1616955618607 32.1 MB
EGAF00005103696 1616954424004 18.7 MB
EGAF00005103697 1616954424004 20.1 MB
EGAF00005103698 1616955196204 28.3 MB
EGAF00005103699 1616955446900 30.3 MB
EGAF00005103700 1616955618607 32.8 MB
EGAF00005103701 1616955795907 34.7 MB
EGAF00005103702 1616956765620 47.1 MB
EGAF00005103703 1616957012930 50.6 MB
EGAF00005103704 1616955446900 31.4 MB
EGAF00005103705 1616955707538 33.6 MB
EGAF00005103706 1616955083486 26.4 MB
EGAF00005103707 1616955381317 28.5 MB
EGAF00005103708 1616954968436 25.3 MB
EGAF00005103709 1616955144182 27.1 MB
EGAF00005104146 1616956278494 41.2 MB
EGAF00005104147 1616956631352 44.4 MB
EGAF00005104148 1616956176409 38.4 MB
EGAF00005104149 1616956480994 40.6 MB
EGAF00005104150 1616956813263 48.4 MB
EGAF00005104151 1616957234385 51.7 MB
EGAF00005104152 1616955260176 29.0 MB
EGAF00005104153 1616955446900 30.3 MB
EGAF00005104154 1616955196204 28.1 MB
EGAF00005104155 1616955446900 30.4 MB
EGAF00005104156 1616955260176 28.9 MB
EGAF00005104157 1616955446900 30.5 MB
EGAF00005104158 1616955523878 30.7 MB
EGAF00005104159 1616955618607 32.5 MB
EGAF00005104160 1616956096280 38.1 MB
EGAF00005104161 1616956399039 40.2 MB
EGAF00005104162 1616955707538 33.3 MB
EGAF00005104163 1616955920256 36.0 MB
EGAF00005104164 1616954820682 23.8 MB
EGAF00005104165 1616954968436 25.3 MB
EGAF00005104166 1616955795907 34.0 MB
EGAF00005104167 1616955920256 35.8 MB
EGAF00005104168 1616955196204 28.4 MB
EGAF00005104169 1616955381317 30.1 MB
EGAF00005104170 1616955523878 30.6 MB
EGAF00005104171 1616955707538 32.6 MB
EGAF00005104172 1616955618607 32.5 MB
EGAF00005104173 1616955795907 35.0 MB
EGAF00005104174 1616955446900 31.1 MB
EGAF00005104175 1616955707538 33.0 MB
EGAF00005104176 1616957311660 55.0 MB
EGAF00005104177 1616957681548 59.3 MB
EGAF00005104178 1616956176409 39.5 MB
EGAF00005104179 1616956352711 42.1 MB
EGAF00005104180 1616955196204 28.1 MB
EGAF00005104181 1616955381317 30.0 MB
EGAF00005104182 1616955083486 26.9 MB
EGAF00005104183 1616955260176 28.5 MB
EGAF00005104184 1616955707539 33.0 MB
EGAF00005104185 1616955795907 34.9 MB
EGAF00005104186 1616955707539 31.4 MB
EGAF00005104187 1616955795907 33.3 MB
EGAF00005104188 1616954820682 23.6 MB
EGAF00005104189 1616954968436 25.0 MB
EGAF00005104190 1616955976149 33.9 MB
EGAF00005104191 1616956032482 36.3 MB
EGAF00005104192 1616955196204 28.4 MB
EGAF00005104193 1616955381317 30.1 MB
268 Files (7.5 GB)