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Genetic-epigenetic tissue mapping for plasma DNA: applications in prenatal testing, transplantation and oncology

We developed Genetic-Epigenetic Tissue Mapping (GETMap) to determine the tissue composition of plasma DNA carrying genetic variants not present in the constitutional genome through comparing their methylation profiles with relevant tissues.

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Policy for Plasma DNA data sharing

The CUHK Circulating Nucleic Acids Research Group Data Access Agreement This agreement governs the terms and conditions on which access will be granted to users of the sequencing and genotyping data generated by The Chinese University of Hong Kong (CUHK) Circulating Nucleic Acids Research Group (CNARG). The terms and conditions of access set out in this agreement apply both to the User and the User’s Institution (both as defined below). User is referred to within the agreement as “You” and the term “Your” will be construed accordingly. By signing this agreement, You agree to be bound by the terms and conditions of access set out in this agreement. Definitions: Group means The Chinese University of Hong Kong (CUHK) Circulating Nucleic Acids Research Group (CNARG). Data means all and any human genetic data obtained by User or User’s Institution from the Group via the European Genome-phenome Archive. Data Subject means a person, who has been informed of the purpose for which the Data is held and has given his/her informed consent thereto. In the event that the Data Subject is legally incapable of giving an informed consent, such consent has been given by his/her legal guardian. User means a researcher whose User’s Institution has previously completed this Data Access Agreement and has received acknowledgement of its acceptance by the Group. Data Access Committee means a committee assigned by the Group for reviewing and approving the data access application of the User. The committee consists of three or more investigators from the Group. Publications means, without limitation, articles published in print journals, electronic journals, reviews, books, posters and other written, electronic, graphical, photographic, recorded (including oral recordings), and verbal presentations of research. User’s Institution means the organisation at which the User is employed, affiliated or enrolled. Terms and Conditions: By signing this agreement: 1. You agree to use the Data only for the advancement of medical and scientific research, according to the consent given by Data Subjects. 2. You agree not to use the Data for the creation of products for sale or for any commercial purpose. 3. You agree to preserve, at all times, the confidentiality of information and Data pertaining to Data Subjects. In particular, You undertake not to use, or attempt to use the Data to compromise or otherwise infringe the confidentiality of information on Data Subjects and their right to privacy. 4. You agree not to transfer or disclose the Data, in whole or in part, or any information/material derived from the Data, to others, except as reasonably necessary for data/safety monitoring or programme management. Should You wish to share the Data with a collaborator within the same User’s Institution, the collaborator must make a separate application for access to the Data. 5. You agree to use the Data for the approved purpose and project described in your application only; use of the Data for a new purpose or project will require a new application and approval. 6. You agree to acknowledge in any work based in whole or in part on the Data, the publications from which the Data derives, the version of the Data, and the role of the Group. The wordings of the acknowledgement are “This study makes use of data generated by The Chinese University of Hong Kong (CUHK) Circulating Nucleic Acids Research Group, as reported by Chan et al in Clinical Chemistry (doi:10.1373/clinchem.2012.196014). 7. You accept that the Group, the original data creators, depositors or copyright holders, or the funders of the Group: a) make no warranties or representations with respect to the Data, including but not limited to its fitness for purpose, accuracy or comprehensiveness, the continued access to the Data without interruption; and b) accept no liability for any direct, indirect, consequential, special or incidental, damages or losses arising from or in connection with the use of the Data or this agreement. 8. You understand and acknowledge that the Data is protected by copyright and other intellectual property rights, and that reproduction, except as reasonably required to carry out Your research with the Data in accordance with the approved purpose referred to in paragraph 5 above, or sale of all or part of the Data in any form is not permitted. 9. You agree that nothing in this agreement shall operate to transfer to You or to the User’s Institution any intellectual property rights relating to the Data. 10. You accept that this agreement will be terminated immediately by the Group without notice upon breach of any terms of this agreement by You and You agree to destroy any Data held when required. 11. You accept that it may be necessary for the Group or its appointed agent to alter the terms of this agreement from time to time in order to address new concerns. In this event, the Group or its appointed agent will to inform You of any changes. You agree that Your continued use of the Data shall be deemed to represent your consent to any revised terms of the Agreement. 12. You agree that you will submit a report to the Data Access Committee, if requested, on completion of the agreed purpose. The Data Access Committee agrees to treat the report and all information, data, results, and conclusions contained within such report as confidential information belonging to the User’s Institution. 13. You accept that the Data is protected by the privacy law in the relevant jurisdiction and that You are responsible for ensuring Your use of the Data is in compliance with any such applicable law. Notwithstanding the above, nothing in this agreement shall limit the rights of the Data Subjects under the Personal Data (Privacy) Ordinance (Cap 486) in Hong Kong. The Data Access Committee reserves the right to request and inspect data security and management documentation to ensure the adequacy of data protection measures in countries that have no national laws comparable to that which pertain in the Personal Data (Privacy) Ordinance in Hong Kong. 14. This agreement shall be construed, interpreted and governed by the laws of Hong Kong Special Administrative Region.   For and on behalf of User: Name of Applicant(s): _____________________________________ _____________________________________ _____________________________________ _____________________________________ Signature of Applicant(s): _____________________________________ _____________________________________ _____________________________________ _____________________________________ Date: _____________________________________ For and on behalf of User’s Institution: Signature of Institutional or Administrative Authority: ______________________________________ Print name: ______________________________________ User’s Institution: ______________________________________ Date: ¬¬¬¬¬¬¬¬¬¬¬¬¬¬¬¬¬¬¬______________________________________ WHEN SUBMITTING THIS DOCUMENT, PLEASE INCLUDE ALL PAGES OF THE AGREEMENT WITH THIS SIGNATURE PAGE

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00005093072 1615668251365 12.8 GB
EGAF00005093073 1615677513039 15.3 GB
EGAF00005093074 1615655646380 12.2 GB
EGAF00005093075 1615665487190 14.5 GB
EGAF00005093076 1615662825085 12.3 GB
EGAF00005093077 1615671784562 14.4 GB
EGAF00005093078 1615660315643 12.3 GB
EGAF00005093079 1615663685589 14.5 GB
EGAF00005093080 1615657328906 12.1 GB
EGAF00005093081 1615664825961 14.1 GB
EGAF00005093082 1615656543784 12.2 GB
EGAF00005093083 1615663330170 14.3 GB
EGAF00005093084 1615663984821 11.9 GB
EGAF00005093085 1615670295005 13.9 GB
EGAF00005093086 1615657451899 12.4 GB
EGAF00005093087 1615668012301 14.7 GB
EGAF00005093088 1615664645529 10.8 GB
EGAF00005093089 1615664645529 12.5 GB
EGAF00005093090 1615646766577 10.4 GB
EGAF00005093091 1615656543784 12.0 GB
EGAF00005093092 1615663084392 14.6 GB
EGAF00005093093 1615671784562 16.1 GB
EGAF00005093094 1615670946078 14.5 GB
EGAF00005093095 1615672153602 16.1 GB
EGAF00005093096 1615662825085 14.3 GB
EGAF00005093097 1615667584580 16.5 GB
EGAF00005093098 1615662825085 14.0 GB
EGAF00005093099 1615681343888 16.3 GB
EGAF00005093100 1615648572123 10.4 GB
EGAF00005093101 1615656484373 12.3 GB
EGAF00005093102 1615637346001 8.8 GB
EGAF00005093103 1615639024931 8.8 GB
EGAF00005093104 1615645087580 9.0 GB
EGAF00005093105 1615648746197 10.3 GB
EGAF00005093106 1615642996967 8.9 GB
EGAF00005093107 1615646585350 10.2 GB
EGAF00005093108 1615638064871 8.1 GB
EGAF00005093109 1615640003597 9.3 GB
EGAF00005093110 1615639324750 9.1 GB
EGAF00005093111 1615650844386 10.5 GB
EGAF00005093112 1615637178702 8.6 GB
EGAF00005093113 1615644486283 9.9 GB
EGAF00005093114 1615644561323 9.6 GB
EGAF00005093115 1615651688938 11.3 GB
EGAF00005093116 1615651145970 11.3 GB
EGAF00005093117 1615668973177 13.1 GB
EGAF00005093118 1615649584942 10.6 GB
EGAF00005093119 1615655524304 12.1 GB
EGAF00005093120 1615669814600 17.1 GB
EGAF00005093121 1615684664144 19.6 GB
EGAF00005093122 1615690763945 17.0 GB
EGAF00005093123 1615684664145 19.8 GB
EGAF00005093124 1615676226880 16.3 GB
EGAF00005093125 1615671609921 18.0 GB
EGAF00005093126 1615669814600 16.9 GB
EGAF00005093127 1615682830672 19.6 GB
EGAF00005093128 1615667705467 16.3 GB
EGAF00005093129 1615682544530 18.9 GB
EGAF00005093130 1615671784562 16.5 GB
EGAF00005093131 1615671185973 18.0 GB
EGAF00005093132 1615666327524 14.9 GB
EGAF00005093133 1615667116397 15.9 GB
EGAF00005093134 1615667053427 15.3 GB
EGAF00005093135 1615677513039 16.4 GB
EGAF00005093136 1615667348691 16.7 GB
EGAF00005093137 1615670584977 18.1 GB
EGAF00005093138 1615667527927 16.3 GB
EGAF00005093139 1615681197910 17.7 GB
EGAF00005093140 1615677513038 15.4 GB
EGAF00005093141 1615669814600 17.3 GB
EGAF00005093142 1615664406764 15.4 GB
EGAF00005093143 1615675383634 17.2 GB
EGAF00005093144 1615669814600 13.9 GB
EGAF00005093145 1615673893359 15.9 GB
EGAF00005093146 1615663265321 14.0 GB
EGAF00005093147 1615673832663 15.9 GB
EGAF00005093148 1615667645864 16.8 GB
EGAF00005093149 1615668424932 16.8 GB
EGAF00005093150 1615675026750 16.6 GB
EGAF00005093151 1615666938377 16.6 GB
EGAF00005093152 1615673549086 16.8 GB
EGAF00005093153 1615671252355 18.8 GB
EGAF00005093154 1615678989109 16.9 GB
EGAF00005093155 1615681197910 19.3 GB
EGAF00005093156 1615654633470 10.8 GB
EGAF00005093157 1615660315643 12.4 GB
EGAF00005093158 1615652707327 11.4 GB
EGAF00005093159 1615660315643 13.1 GB
EGAF00005093160 1615651145970 11.0 GB
EGAF00005093161 1615657924194 12.6 GB
EGAF00005093162 1615661704787 11.6 GB
EGAF00005093163 1615660412516 13.2 GB
EGAF00005093164 1615673549086 14.9 GB
EGAF00005093165 1615681197910 16.2 GB
EGAF00005093166 1615668074763 16.6 GB
EGAF00005093167 1615681197910 18.9 GB
EGAF00005093168 1615671129455 18.3 GB
EGAF00005093169 1615673549086 19.8 GB
EGAF00005093170 1615662825085 14.1 GB
EGAF00005093171 1615673946545 16.0 GB
EGAF00005093172 1615671314739 14.1 GB
EGAF00005093173 1615671064071 16.1 GB
EGAF00005093174 1615673549086 16.9 GB
EGAF00005093175 1615671377794 18.8 GB
EGAF00005093176 1615671494517 17.1 GB
EGAF00005093177 1615671847441 18.9 GB
EGAF00005093178 1615664406764 14.9 GB
EGAF00005093179 1615689809963 16.7 GB
EGAF00005093180 1615674128647 14.8 GB
EGAF00005093181 1615677513038 16.4 GB
EGAF00005093182 1615682776226 15.0 GB
EGAF00005093183 1615679414200 17.5 GB
EGAF00005093184 1615665553719 15.0 GB
EGAF00005093185 1615682716023 17.4 GB
EGAF00005093186 1615681197910 17.2 GB
EGAF00005093187 1615673549086 19.5 GB
EGAF00005093188 1615671494517 17.1 GB
EGAF00005093189 1615674903987 19.5 GB
EGAF00005093190 1615669814600 15.6 GB
EGAF00005093191 1615674423870 17.0 GB
EGAF00005093192 1615677513038 15.3 GB
EGAF00005093193 1615681197911 17.6 GB
EGAF00005093194 1615667348691 16.3 GB
EGAF00005093195 1615681197911 18.2 GB
EGAF00005093196 1618413436055 15.5 GB
EGAF00005093197 1615692775860 17.0 GB
EGAF00005093198 1615665070559 15.5 GB
EGAF00005093199 1615668855675 17.1 GB
EGAF00005093200 1615667172770 15.4 GB
EGAF00005093201 1615669144228 17.3 GB
EGAF00005093202 1615666327524 15.2 GB
EGAF00005093203 1615682470513 17.4 GB
EGAF00005093204 1615664406764 15.2 GB
EGAF00005093205 1615673549086 17.6 GB
EGAF00005093206 1615648142953 8.4 GB
EGAF00005093207 1615637839248 9.0 GB
EGAF00005093208 1615665553719 15.0 GB
EGAF00005093209 1615668548038 17.0 GB
EGAF00005093210 1615666327524 15.1 GB
EGAF00005093211 1615667232740 16.1 GB
EGAF00005093212 1615671314739 17.7 GB
EGAF00005093213 1615672812539 19.5 GB
EGAF00005093214 1615668973177 17.0 GB
EGAF00005093215 1615681197910 19.2 GB
EGAF00005093216 1615657451899 12.2 GB
EGAF00005093217 1615663625368 13.7 GB
EGAF00005093218 1615656543784 12.2 GB
EGAF00005093219 1615661107751 13.8 GB
EGAF00005093220 1615666327524 14.9 GB
EGAF00005093221 1615688775439 16.3 GB
EGAF00005093222 1615664764030 15.3 GB
EGAF00005093223 1615668074763 16.8 GB
EGAF00005093224 1615651991767 10.5 GB
EGAF00005093225 1615664050705 11.9 GB
EGAF00005093226 1615644327381 9.6 GB
EGAF00005093227 1615650311071 10.7 GB
EGAF00005093228 1615669814600 13.9 GB
EGAF00005093229 1615673549086 14.9 GB
EGAF00005093230 1615673549086 15.7 GB
EGAF00005093231 1615671064071 18.0 GB
EGAF00005093232 1615666989580 15.2 GB
EGAF00005093233 1615675026749 17.2 GB
EGAF00005093234 1615661235893 13.6 GB
EGAF00005093235 1615671784562 15.0 GB
EGAF00005093236 1615669865823 13.6 GB
EGAF00005093237 1615671555168 15.2 GB
EGAF00005093238 1615674423870 17.0 GB
EGAF00005093239 1615673549086 19.6 GB
EGAF00005093240 1615668604670 16.7 GB
EGAF00005093241 1615672024541 19.3 GB
EGAF00005093242 1615675149433 16.7 GB
EGAF00005093243 1615677513038 19.4 GB
EGAF00005093244 1615669814600 17.0 GB
EGAF00005093245 1615681197910 19.9 GB
EGAF00005093246 1615661411454 13.9 GB
EGAF00005093247 1615674484670 15.6 GB
EGAF00005093248 1615661529305 13.8 GB
EGAF00005093249 1615669925556 15.6 GB
EGAF00005093250 1615669814600 15.6 GB
EGAF00005093251 1615669144228 17.1 GB
EGAF00005093252 1615672024541 16.0 GB
EGAF00005093253 1615688775439 17.5 GB
EGAF00005093254 1615669993139 15.8 GB
EGAF00005093255 1615667645864 16.8 GB
EGAF00005093256 1615666327524 15.9 GB
EGAF00005093257 1615674183945 17.0 GB
EGAF00005093258 1615678207563 17.1 GB
EGAF00005093259 1615673644852 20.0 GB
EGAF00005093260 1615673549086 16.9 GB
EGAF00005093261 1615681197910 19.7 GB
EGAF00005093262 1615665185148 15.1 GB
EGAF00005093263 1615669814600 17.1 GB
EGAF00005093264 1615671727143 15.0 GB
EGAF00005093265 1615675986970 17.0 GB
EGAF00005093266 1615673946545 16.9 GB
EGAF00005093267 1615683309601 19.0 GB
EGAF00005093268 1615679414200 16.9 GB
EGAF00005093269 1615672083726 19.0 GB
EGAF00005093270 1615667584580 16.8 GB
EGAF00005093271 1615674128647 19.0 GB
EGAF00005093272 1615675863358 16.8 GB
EGAF00005093273 1615673549086 19.4 GB
EGAF00005093274 1615677513039 17.2 GB
EGAF00005093275 1615676287863 19.4 GB
EGAF00005093276 1615679866729 17.6 GB
EGAF00005093277 1615673710996 20.0 GB
EGAF00005093278 1615667172770 16.0 GB
EGAF00005093279 1615671494517 18.4 GB
EGAF00005093280 1615671129455 16.1 GB
EGAF00005093281 1615677513039 18.5 GB
EGAF00005093282 1615664164766 15.1 GB
EGAF00005093283 1615692775861 16.9 GB
EGAF00005093284 1615666631370 15.7 GB
EGAF00005093285 1615670295005 17.7 GB
EGAF00005093286 1615665009334 14.3 GB
EGAF00005093287 1615674423870 15.4 GB
EGAF00005093288 1615667116397 16.2 GB
EGAF00005093289 1615673549086 17.9 GB
EGAF00005093290 1615667172770 16.2 GB
EGAF00005093291 1615673549086 17.6 GB
EGAF00005093292 1615663146438 14.4 GB
EGAF00005093293 1615664535279 15.5 GB
EGAF00005093294 1615665487190 15.6 GB
EGAF00005093295 1615681753148 17.7 GB
EGAF00005093296 1617934264538 5.5 GB
EGAF00005093297 1617939684749 6.3 GB
EGAF00005093298 1617948867402 7.1 GB
EGAF00005093299 1618412920761 7.9 GB
EGAF00005093300 1618009164210 30.1 GB
EGAF00005093301 1618044256480 34.8 GB
EGAF00005093302 1615593514903 2.5 GB
EGAF00005093303 1615595552136 2.9 GB
EGAF00005093304 1615589360996 2.4 GB
EGAF00005093305 1615592722540 2.8 GB
EGAF00005093306 1615591271781 2.4 GB
EGAF00005093307 1615596256089 2.8 GB
EGAF00005093308 1615591045121 2.4 GB
EGAF00005093309 1615592238117 2.7 GB
EGAF00005093310 1615688775439 15.9 GB
EGAF00005093311 1615678989109 16.9 GB
EGAF00005093312 1615666938377 15.9 GB
EGAF00005093313 1615668855675 16.9 GB
EGAF00005093314 1615673946545 15.9 GB
EGAF00005093315 1615674664526 16.6 GB
EGAF00005093316 1615670047410 15.7 GB
EGAF00005093317 1615685079089 16.4 GB
EGAF00005096571 1615774091942 16.3 GB
EGAF00005096572 1615774091943 19.0 GB
EGAF00005096573 1615774091942 16.4 GB
EGAF00005096574 1615774091942 17.7 GB
EGAF00005096575 1615774091942 16.0 GB
EGAF00005096576 1615774091942 18.7 GB
EGAF00005096577 1615774091942 16.6 GB
EGAF00005096578 1615774091942 18.1 GB
EGAF00005096579 1615774091942 14.7 GB
EGAF00005096580 1615774091942 16.4 GB
EGAF00005096581 1615774091942 14.8 GB
EGAF00005096582 1615774091943 16.5 GB
EGAF00005096583 1615774091942 14.8 GB
EGAF00005096584 1615774091942 16.4 GB
EGAF00005096585 1615774091942 14.8 GB
EGAF00005096586 1615774091942 16.6 GB
EGAF00005096587 1615774091942 15.0 GB
EGAF00005096588 1615774091942 17.1 GB
EGAF00005096589 1615774091942 15.0 GB
EGAF00005096590 1615774091943 17.0 GB
EGAF00005096591 1615774091942 15.0 GB
EGAF00005096592 1615774091943 16.9 GB
EGAF00005096593 1615774091942 14.9 GB
EGAF00005096594 1615774091942 16.9 GB
EGAF00005096595 1615774091942 15.2 GB
EGAF00005096596 1615774091942 17.4 GB
EGAF00005096597 1615774091942 15.1 GB
EGAF00005096598 1615774091942 17.3 GB
EGAF00005096599 1615774091942 15.0 GB
EGAF00005096600 1615774091942 17.3 GB
EGAF00005096601 1615774091942 15.0 GB
EGAF00005096602 1615774091942 17.1 GB
EGAF00005096603 1615774091942 16.5 GB
EGAF00005096604 1615774091942 18.6 GB
EGAF00005096605 1615774091942 16.5 GB
EGAF00005096606 1615774091942 18.6 GB
EGAF00005096607 1615774091942 16.5 GB
EGAF00005096608 1615774091942 18.6 GB
EGAF00005096609 1615774091942 16.4 GB
EGAF00005096610 1615774091942 18.5 GB
EGAF00005096611 1615774091942 6.5 GB
EGAF00005096612 1615774091942 6.4 GB
EGAF00005096613 1615774091942 9.7 GB
EGAF00005096614 1615774091942 9.9 GB
EGAF00005096615 1615774091942 8.6 GB
EGAF00005096616 1615774091942 8.7 GB
EGAF00005096617 1615774091942 8.0 GB
EGAF00005096618 1615774091942 8.2 GB
EGAF00005096619 1615774091942 1.6 GB
EGAF00005096620 1615774091942 1.6 GB
EGAF00005096621 1615774091942 5.1 GB
EGAF00005096622 1615774091942 5.2 GB
EGAF00005096623 1615774091942 3.8 GB
EGAF00005096624 1615774091942 3.8 GB
EGAF00005096625 1615774091942 13.4 GB
EGAF00005096626 1615774091942 13.6 GB
EGAF00005096627 1615774091942 13.1 GB
EGAF00005096628 1615774091942 13.4 GB
304 Files (4.5 TB)