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RNA-sequencing of primary urothelial bladder cancer samples

Paired-end RNA-sequencing of tumour tissue samples (n=85) from primary urothelial bladder cancer patients. Sequencing was performed using either HiSeq (n=27) or NextSeq (n=58) Illumina platforms. Of the 85 samples, 78 are Non-muscle invasive (NMIBC) and 7 are Muscle invasive (MIBC).

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Governing body for the terms and conditions of accessing genotyping and/or genomic sequencing (DNA or RNA) generated by the Bladder Cancer Prognosis Programme and the Bladder Cancer Research Centre at the University of Birmingham, United Kingdom

Terms and Conditions: 1. No personally identifiable information will be released. Limited clinical information may be passed on to researchers within the European Economic Area. It would not be possible to identify any patient from this information and any information provided will be handled according to the normal standard of medical confidentiality and data protection. 2. Data analyses may be carried out by other academic institutions in a collaborative fashion so long as the research will be carried out in-line with the objectives and ethical approvals of the Bladder Cancer Prognosis Programme and the Bladder Cancer Research Centre at the University of Birmingham, UK: https://www.birmingham.ac.uk/Documents/college-mds/cancer-genomic-sciences/Bladder-Cancer-Prognosis-Programme-SELENIB-Trial.pdf and https://www.birmingham.ac.uk/research/bladder-cancer/index.aspx 3. You agree to use the Data only for the purpose of academic/medical research. 4. You agree not to use the Data for any commercial purpose. 5. You agree to preserve the confidentiality of Data pertaining to Data Subjects. In particular, you agree not to use, or attempt not to use the Data to compromise or otherwise infringe the confidentiality of information on Data Subjects and their right to privacy. 6. You agree not to attempt to link the Data with any other data source that could be used to identify any Data Subject from the Data. 7. You agree not to transfer or disclose the Data, in whole or part, or any derivative of the Data, to others, except as necessary for data/safety monitoring or program management. Should you wish to share the Data with a collaborator outside the same Institution, the third party must make a separate application for access to the Data. 8. You agree to use the Data for the approved purpose and project described in your Application for Access to Genotype Data. Use of the Data for a new purpose or project will require a new application and approval. 9. You agree to acknowledge the Bladder Cancer Research Centre, Institute of Cancer & Genomic Sciences, University of Birmingham, UK in any publication arising from research that makes use of the Data. 10. You understand and acknowledge that the Data is protected by intellectual property rights, and that duplication, except as reasonably required to carry out Your research with the Data, or sale of all or part of the Data on any media is not permitted. 11. You recognize that nothing in the Agreement allows to transfer to the User Institution any intellectual property rights relating to the Data. 12. The Agreement (and any dispute, controversy, proceedings or claim of whatsoever nature arising out of the Agreement on its formation) shall be construed, interpreted and governed by the laws of England and Wales and shall be subject to the exclusive jurisdiction of the English courts.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00005068425 1615329183711 1.4 GB
EGAF00005068426 1615329604201 1.5 GB
EGAF00005068427 1615335348132 3.4 GB
EGAF00005068428 1615329123920 3.5 GB
EGAF00005068429 1615329315695 552.4 MB
EGAF00005068430 1615328888405 559.8 MB
EGAF00005068431 1615328943271 550.4 MB
EGAF00005068432 1615328888405 564.2 MB
EGAF00005068433 1615328888405 569.4 MB
EGAF00005068434 1615329790462 581.9 MB
EGAF00005068435 1615329430002 2.1 GB
EGAF00005068436 1615329856312 2.2 GB
EGAF00005068437 1615329123920 2.8 GB
EGAF00005068438 1615329245114 2.9 GB
EGAF00005068439 1615329487477 1.3 GB
EGAF00005068440 1615329487477 1.0 GB
EGAF00005068441 1615334121299 2.2 GB
EGAF00005068442 1615334121299 2.2 GB
EGAF00005068443 1615337647925 2.3 GB
EGAF00005068444 1615616446550 2.3 GB
EGAF00005068445 1615346414912 3.3 GB
EGAF00005068446 1615335348132 3.4 GB
EGAF00005068447 1615344902372 5.0 GB
EGAF00005068448 1615341006106 5.2 GB
EGAF00005068449 1615335348132 2.6 GB
EGAF00005068450 1615338787821 2.7 GB
EGAF00005068451 1615335348132 2.2 GB
EGAF00005068452 1615335348132 2.3 GB
EGAF00005068453 1615335348132 1.9 GB
EGAF00005068454 1615334230071 1.9 GB
EGAF00005068455 1615332976142 2.2 GB
EGAF00005068456 1615335348132 2.2 GB
EGAF00005068457 1615332213038 2.5 GB
EGAF00005068458 1615334305457 2.5 GB
EGAF00005068459 1615333342052 2.3 GB
EGAF00005068460 1615333641070 2.4 GB
EGAF00005068461 1615333218745 2.8 GB
EGAF00005068462 1615336696239 2.9 GB
EGAF00005068463 1615337045643 1.5 GB
EGAF00005068464 1615336281934 1.5 GB
EGAF00005068465 1615334000513 2.9 GB
EGAF00005068466 1615339505385 2.9 GB
EGAF00005068467 1615339032890 3.4 GB
EGAF00005068468 1615339032890 3.5 GB
EGAF00005068469 1615333759424 470.6 MB
EGAF00005068470 1615333398338 383.7 MB
EGAF00005068471 1615333693793 2.2 GB
EGAF00005068472 1615334420578 2.2 GB
EGAF00005068473 1615334420578 990.5 MB
EGAF00005068474 1615333450027 820.4 MB
EGAF00005068475 1615339986165 2.5 GB
EGAF00005068476 1615335348132 2.6 GB
EGAF00005068477 1615337045643 2.7 GB
EGAF00005068478 1615342085605 2.8 GB
EGAF00005068479 1615342865248 3.1 GB
EGAF00005068480 1615337476914 3.1 GB
EGAF00005068481 1615335348132 2.1 GB
EGAF00005068482 1615338670028 2.1 GB
EGAF00005068483 1615335348132 685.8 MB
EGAF00005068484 1615334184700 571.8 MB
EGAF00005068485 1615336745876 860.9 MB
EGAF00005068486 1615334420578 710.7 MB
EGAF00005068487 1615334049415 634.9 MB
EGAF00005068488 1615336211399 646.3 MB
EGAF00005068489 1615335348132 911.2 MB
EGAF00005068490 1615336327435 756.0 MB
EGAF00005068491 1615335348132 617.5 MB
EGAF00005068492 1615336148432 628.5 MB
EGAF00005068493 1615335348132 723.2 MB
EGAF00005068494 1615335348132 736.2 MB
EGAF00005068495 1615337407299 1.1 GB
EGAF00005068496 1615334184700 937.2 MB
EGAF00005068497 1615336869098 2.7 GB
EGAF00005068498 1615342865248 2.7 GB
EGAF00005068499 1615335348132 2.5 GB
EGAF00005068500 1615335745376 2.6 GB
EGAF00005068501 1615335348132 2.8 GB
EGAF00005068502 1615337115450 2.9 GB
EGAF00005068503 1615335348132 2.5 GB
EGAF00005068504 1615340462912 2.6 GB
EGAF00005068505 1615335348132 934.9 MB
EGAF00005068506 1615338976168 778.6 MB
EGAF00005068507 1615341065821 2.5 GB
EGAF00005068508 1615339744316 2.6 GB
EGAF00005068509 1615336999039 1.9 GB
EGAF00005068510 1615337407299 2.0 GB
EGAF00005068511 1615338670028 3.1 GB
EGAF00005068512 1615336575523 3.2 GB
EGAF00005068513 1615337045643 2.3 GB
EGAF00005068514 1615338852962 2.4 GB
EGAF00005068515 1615336575523 2.1 GB
EGAF00005068516 1615341994330 2.2 GB
EGAF00005068517 1615341242952 2.0 GB
EGAF00005068518 1615343224915 2.0 GB
EGAF00005068519 1615338670028 2.4 GB
EGAF00005068520 1615338670028 2.5 GB
EGAF00005068521 1615337893767 2.4 GB
EGAF00005068522 1615339220209 2.4 GB
EGAF00005068523 1615336032911 2.7 GB
EGAF00005068524 1615339505385 2.8 GB
EGAF00005068525 1615340345557 2.1 GB
EGAF00005068526 1615338670028 2.2 GB
EGAF00005068527 1615338670028 2.3 GB
EGAF00005068528 1615338670028 2.4 GB
EGAF00005068529 1615340162697 2.0 GB
EGAF00005068530 1615338670028 2.1 GB
EGAF00005068531 1615339562342 3.5 GB
EGAF00005068532 1615351921612 3.6 GB
EGAF00005068533 1615336999039 310.1 MB
EGAF00005068534 1615335980191 317.5 MB
EGAF00005068535 1615336745876 494.5 MB
EGAF00005068536 1615338670028 500.0 MB
EGAF00005068537 1615337828081 317.5 MB
EGAF00005068538 1615337354859 324.5 MB
EGAF00005068539 1615340105850 2.4 GB
EGAF00005068540 1615336517785 2.5 GB
EGAF00005068541 1615340042719 2.1 GB
EGAF00005068542 1615340283924 2.2 GB
EGAF00005068543 1615340223599 2.6 GB
EGAF00005068544 1615351447875 2.6 GB
EGAF00005068545 1615339032890 3.0 GB
EGAF00005068546 1615353965969 3.0 GB
EGAF00005068547 1615338670028 953.9 MB
EGAF00005068548 1615340042719 973.8 MB
EGAF00005068549 1615337534162 493.0 MB
EGAF00005068550 1615336696239 394.5 MB
EGAF00005068551 1615337115450 936.9 MB
EGAF00005068552 1615338670028 955.4 MB
EGAF00005068553 1615338914376 871.7 MB
EGAF00005068554 1615338787821 731.3 MB
EGAF00005068555 1615339272235 2.5 GB
EGAF00005068556 1615343942671 2.6 GB
EGAF00005068557 1615338670028 2.3 GB
EGAF00005068558 1615337828081 2.3 GB
EGAF00005068559 1615339032890 2.7 GB
EGAF00005068560 1615339562342 2.7 GB
EGAF00005068561 1615353425641 2.6 GB
EGAF00005068562 1615339148094 2.6 GB
EGAF00005068563 1615353965969 2.3 GB
EGAF00005068564 1615338787821 2.4 GB
EGAF00005068565 1615339389450 2.0 GB
EGAF00005068566 1615337951170 2.0 GB
EGAF00005068567 1615356470378 3.7 GB
EGAF00005068568 1615348385212 3.8 GB
EGAF00005068569 1615340283924 2.0 GB
EGAF00005068570 1615341994330 2.0 GB
EGAF00005068571 1615347907773 3.1 GB
EGAF00005068572 1615353965969 3.2 GB
EGAF00005068573 1615337951170 2.0 GB
EGAF00005068574 1615341423208 2.0 GB
EGAF00005068575 1615352824344 2.4 GB
EGAF00005068576 1615339220209 2.4 GB
EGAF00005068577 1615338670028 1.4 GB
EGAF00005068578 1615338670028 1.4 GB
EGAF00005068579 1615339326065 1.2 GB
EGAF00005068580 1615338787821 1.3 GB
EGAF00005068581 1615353008888 2.3 GB
EGAF00005068582 1615339923193 2.4 GB
EGAF00005068583 1615338670028 1.5 GB
EGAF00005068584 1615339805987 1.6 GB
EGAF00005068585 1615338787821 690.3 MB
EGAF00005068586 1615337647925 563.0 MB
EGAF00005068587 1615343765244 2.3 GB
EGAF00005068588 1615338670028 2.4 GB
EGAF00005068589 1615338670028 742.4 MB
EGAF00005068590 1615337534162 614.8 MB
EGAF00005068591 1615339389450 1.2 GB
EGAF00005068592 1615337534162 1.2 GB
EGAF00005068593 1615339087649 2.5 GB
EGAF00005068594 1615340462912 2.6 GB
170 Files (338.3 GB)