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Whole exome sequencing of chronic myeloid leukemia

Whole exome sequencing of 52 chronic phase/blast crisis pairs obtained from chronic myeloid leukemia

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Data access agreement

DATA ACCESS AGREEMENT These terms and conditions govern access to the managed access datasets (details of which are set out in Appendix I) to which the User Institution has requested access. The User Institution agrees to be bound by these terms and conditions. Definitions Authorised Personnel: The individuals at the User Institution to whom Kyoto University grants access to the Data. This includes the User, the individuals listed in Appendix II and any other individuals for whom the User Institution subsequently requests access to the Data. Details of the initial Authorised Personnel are set out in Appendix II. Data: The managed access datasets to which the User Institution has requested access. Data Producers: Kyoto University and the collaborators listed in Appendix I responsible for the development, organization, and oversight of these Data. External Collaborator: A collaborator of the User, working for an institution other than the User Institution. Project: The project for which the User Institution has requested access to these Data. A description of the Project is set out in Appendix II. Publications: Includes, without limitation, articles published in print journals, electronic journals, reviews, books, posters and other written and verbal presentations of research. Research Participant: An individual whose data form part of these Data. Research Purposes: Shall mean research that is seeking to advance the understanding of genetics and genomics, including the treatment of disorders, and work on statistical methods that may be applied to such research. User: The principal investigator for the Project. User Institution(s): The Institution that has requested access to the Data. Kyoto University: Department of Pathology and Tumor Biology, Kyoto University. 1. The User Institution agrees to only use these Data for the purpose of the Project (described in Appendix II) and only for Research Purposes. The User Institution further agrees that it will only use these Data for Research Purposes which are within the limitations (if any) set out in Appendix I. 2. The User Institution agrees to preserve, at all times, the confidentiality of these Data. In particular, it undertakes not to use, or attempt to use these Data to compromise or otherwise infringe the confidentiality of information on Research Participants. Without prejudice to the generality of the foregoing, the User Institution agrees to use at least the measures set out in Appendix I to protect these Data. 3. The User Institution agrees to protect the confidentiality of Research Participants in any research papers or publications that they prepare by taking all reasonable care to limit the possibility of identification. 4. The User Institution agrees not to link or combine these Data to other information or archived data available in a way that could re-identify the Research Participants, even if access to that data has been formally granted to the User Institution or is freely available without restriction. 5. The User Institution agrees only to transfer or disclose these Data, in whole or part, or any material derived from these Data, to the Authorised Personnel. Should the User Institution wish to share these Data with an External Collaborator, the External Collaborator must complete a separate application for access to these Data. 6. The User Institution agrees that the Data Producers, and all other parties involved in the creation, funding or protection of these Data: a) make no warranty or representation, express or implied as to the accuracy, quality or comprehensiveness of these Data; b) exclude to the fullest extent permitted by law all liability for actions, claims, proceedings, demands, losses (including but not limited to loss of profit), costs, awards damages and payments made by the Recipient that may arise (whether directly or indirectly) in any way whatsoever from the Recipient’s use of these Data or from the unavailability of, or break in access to, these Data for whatever reason and; c) bear no responsibility for the further analysis or interpretation of these Data. 7. The User Institution agrees to follow the Fort Lauderdale Guidelines (http://www.wellcome.ac.uk/stellent/groups/corporatesite/@policy_communications/documents/web_document/wtd003207.pdf) and the Toronto Statement (http://www.nature.com/nature/journal/v461/n7261/full/461168a.html). This includes but is not limited to recognising the contribution of the Data Producers and including a proper acknowledgement in all reports or publications resulting from the use of these Data. 8. The User Institution agrees to follow the Publication Policy in Appendix III. This includes respecting the moratorium period for the Data Producers to publish the first peer-reviewed report describing and analysing these Data. 9. The User Institution agrees not to make intellectual property claims on these Data and not to use intellectual property protection in ways that would prevent or block access to, or use of, any element of these Data, or conclusion drawn directly from these Data. 10. The User Institution can elect to perform further research that would add intellectual and resource capital to these data and decide to obtain intellectual property rights on these downstream discoveries. In this case, the User Institution agrees to implement licensing policies that will not obstruct further research and to follow the U.S. National Institutes of Health Best Practices for the Licensing of Genomic Inventions (2005) (https://www.icgc.org/files/daco/NIH_BestPracticesLicensingGenomicInventions_2005_en.pdf ) in conformity with the Organization for Economic Co-operation and Development Guidelines for the Licensing of the Genetic Inventions (2006) (http://www.oecd.org/science/biotech/36198812.pdf ). 11. The User Institution agrees to destroy/discard the Data held, once it is no longer used for the Project, unless obliged to retain the data for archival purposes in conformity with audit or legal requirements. 12. The User Institution will notify Kyoto University within 30 days of any changes or departures of Authorised Personnel. 13. The User Institution will notify Kyoto University prior to any significant changes to the protocol for the Project. 14. The User Institution will notify Kyoto University as soon as it becomes aware of a breach of the terms or conditions of this agreement. 15. Kyoto University may terminate this agreement by written notice to the User Institution. If this agreement terminates for any reason, the User Institution will be required to destroy any Data held, including copies and backup copies. This clause does not prevent the User Institution from retaining these data for archival purpose in conformity with audit or legal requirements. 16. The User Institution accepts that it may be necessary for the Data Producers to alter the terms of this agreement from time to time. As an example, this may include specific provisions relating to the Data required by Data Producers other than Kyoto University. In the event that changes are required, the Data Producers or their appointed agent will contact the User Institution to inform it of the changes and the User Institution may elect to accept the changes or terminate the agreement. 17. If requested, the User Institution will allow data security and management documentation to be inspected to verify that it is complying with the terms of this agreement. 18. The User Institution agrees to distribute a copy of these terms to the Authorised Personnel. The User Institution will procure that the Authorised Personnel comply with the terms of this agreement. 19. This agreement (and any dispute, controversy, proceedings or claim of whatever nature arising out of this agreement or its formation) shall be construed, interpreted and governed by the laws of Japan and shall be subject to the exclusive jurisdiction of the Japanese courts.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00005067706 bam 9.5 GB
EGAF00005067707 1615320496270 9.3 GB
EGAF00005067708 1615324507182 10.6 GB
EGAF00005067709 1615335348132 8.9 GB
EGAF00005067710 1615343705447 10.2 GB
EGAF00005067711 1615321212638 9.2 GB
EGAF00005067712 1615319042478 7.4 GB
EGAF00005067713 1615332732857 8.2 GB
EGAF00005067714 1615323994606 9.6 GB
EGAF00005067715 1615317909051 9.6 GB
EGAF00005067716 1615325883843 10.5 GB
EGAF00005067717 1615325707377 10.4 GB
EGAF00005067718 1615321026798 10.5 GB
EGAF00005067719 1615332213038 10.6 GB
EGAF00005067720 1615326963704 9.7 GB
EGAF00005067721 1615329968430 8.7 GB
EGAF00005067722 1615319346503 9.5 GB
EGAF00005067723 bam 9.5 GB
EGAF00005067724 1615329790462 9.1 GB
EGAF00005067725 1615330083160 9.3 GB
EGAF00005067726 bam 10.0 GB
EGAF00005067727 1615319103935 7.9 GB
EGAF00005067728 1615325223629 7.2 GB
EGAF00005067729 1615344482626 10.2 GB
EGAF00005067730 1615330682950 9.3 GB
EGAF00005067731 bam 9.8 GB
EGAF00005067732 1615320496270 10.5 GB
EGAF00005067733 1615317248321 11.9 GB
EGAF00005067734 bam 9.8 GB
EGAF00005067735 1615322826380 7.8 GB
EGAF00005067736 1615315504566 9.0 GB
EGAF00005067737 1615324940059 10.3 GB
EGAF00005067738 1615333342052 9.7 GB
EGAF00005067739 1615318325881 9.5 GB
EGAF00005067740 1615333869723 10.1 GB
EGAF00005067741 1615333147291 9.5 GB
EGAF00005067742 1615320790819 9.5 GB
EGAF00005067743 1615327884087 8.4 GB
EGAF00005067744 1615329968430 9.6 GB
EGAF00005067745 1615324329077 8.4 GB
EGAF00005067746 1615327998439 9.0 GB
EGAF00005067747 1615332213038 7.8 GB
EGAF00005067748 1615318142968 7.8 GB
EGAF00005067749 1615325049437 9.5 GB
EGAF00005067750 1615325404727 9.2 GB
EGAF00005067751 1615321212638 10.2 GB
EGAF00005067752 1615320496270 8.5 GB
EGAF00005067753 1615317486447 8.8 GB
EGAF00005067754 1615327676934 10.1 GB
EGAF00005067755 1615333641070 9.2 GB
EGAF00005067756 1615329723146 9.1 GB
EGAF00005067757 1615320967422 9.3 GB
EGAF00005067758 1615324386193 9.2 GB
EGAF00005067759 1615326543700 9.3 GB
EGAF00005067760 bam 9.9 GB
EGAF00005067761 1615323994606 8.4 GB
EGAF00005067762 1615328943271 10.9 GB
EGAF00005067763 1615321807515 8.6 GB
EGAF00005067764 1615318565384 9.5 GB
EGAF00005067765 1615323065525 9.3 GB
EGAF00005067766 1615329968430 10.3 GB
EGAF00005067767 1615332213038 8.1 GB
EGAF00005067768 1615323994606 9.0 GB
EGAF00005067769 1615322768865 7.4 GB
EGAF00005067770 1615317787188 9.5 GB
EGAF00005067771 1615316285301 9.0 GB
EGAF00005067772 1615325942792 10.0 GB
EGAF00005067773 1615324448612 9.5 GB
EGAF00005067774 1615317311041 9.6 GB
EGAF00005067775 bam 9.0 GB
EGAF00005067776 1615313529321 9.3 GB
EGAF00005067777 1615325583582 9.9 GB
EGAF00005067778 1615344782922 11.5 GB
EGAF00005067779 1615313710409 8.3 GB
EGAF00005067780 1615329856312 7.2 GB
EGAF00005067781 1615324940059 9.6 GB
EGAF00005067782 bam 9.9 GB
EGAF00005067783 1615317248321 10.7 GB
EGAF00005067784 bam 9.1 GB
EGAF00005067785 1615318862849 10.1 GB
EGAF00005067786 1615317182160 10.1 GB
EGAF00005067787 1615317486447 8.9 GB
EGAF00005067788 1615336032911 8.6 GB
EGAF00005067789 1615317182160 9.2 GB
EGAF00005067790 1615321566182 7.4 GB
EGAF00005067791 1615334184700 9.2 GB
EGAF00005067792 1615321212638 9.8 GB
EGAF00005067793 1615318506147 10.7 GB
EGAF00005067794 1615340642661 10.8 GB
EGAF00005067795 bam 9.4 GB
EGAF00005067796 1615327676934 8.6 GB
EGAF00005067797 1615334000513 10.1 GB
EGAF00005067798 1615330682950 12.3 GB
EGAF00005067799 bam 9.9 GB
EGAF00005067800 1615320496270 8.6 GB
EGAF00005067801 1615339444789 9.8 GB
EGAF00005067802 1615335348132 10.0 GB
EGAF00005067803 1615323065524 8.6 GB
EGAF00005067804 1615323185205 9.0 GB
EGAF00005067805 1615333218745 8.5 GB
EGAF00005067806 1615330627244 10.8 GB
EGAF00005067807 1615343165687 10.7 GB
EGAF00005067808 1615335348132 9.6 GB
EGAF00005067809 1615330567253 8.9 GB
104 Files (978.6 GB)