HPS1 patient monocyte-derived macrophage and control macrophage RNAseq with and without infection
4 HPS1 patient monocyte-derived macrophages and 4 controls were RNA sequenced at baseline and after Salmonella Typhimurium infection. We used paired end sequencing on an Illumina HiSeq 4000. Each sample was run on 3 lanes for sequencing depth, which we combined for our analysis.
- 48 samples
- DAC: EGAC00001001972
- Technology: Illumina HiSeq 4000
An MTA that ensures patient confidentiality is needed to receive the data.
The committee will consider the applications for data access. An MTA with Professor Louis Cohen is needed to receive the data. The MTA must have a clause confirming that no attempt will be undertaken to de-anonymise the data and that the variant data will not be made publicly available.
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| Other |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Located in | |
|---|---|---|---|---|
| EGAF00005001833 | fastq.gz | 468.1 MB | ||
| EGAF00005001834 | fastq.gz | 509.0 MB | ||
| EGAF00005002737 | fastq.gz | 493.0 MB | ||
| EGAF00005002738 | fastq.gz | 505.2 MB | ||
| EGAF00005002739 | fastq.gz | 407.9 MB | ||
| EGAF00005002740 | fastq.gz | 422.1 MB | ||
| EGAF00005002741 | fastq.gz | 429.0 MB | ||
| EGAF00005002742 | fastq.gz | 442.1 MB | ||
| EGAF00005002743 | fastq.gz | 477.0 MB | ||
| EGAF00005002744 | fastq.gz | 488.5 MB | ||
| EGAF00005002745 | fastq.gz | 426.2 MB | ||
| EGAF00005002746 | fastq.gz | 433.3 MB | ||
| EGAF00005002747 | fastq.gz | 474.4 MB | ||
| EGAF00005002748 | fastq.gz | 489.3 MB | ||
| EGAF00005002749 | fastq.gz | 475.6 MB | ||
| EGAF00005002750 | fastq.gz | 490.7 MB | ||
| EGAF00005002751 | fastq.gz | 511.1 MB | ||
| EGAF00005002752 | fastq.gz | 524.8 MB | ||
| EGAF00005002753 | fastq.gz | 464.5 MB | ||
| EGAF00005002754 | fastq.gz | 477.2 MB | ||
| EGAF00005002755 | fastq.gz | 452.5 MB | ||
| EGAF00005002756 | fastq.gz | 463.4 MB | ||
| EGAF00005002757 | fastq.gz | 396.2 MB | ||
| EGAF00005002758 | fastq.gz | 410.2 MB | ||
| EGAF00005002759 | fastq.gz | 459.3 MB | ||
| EGAF00005002760 | fastq.gz | 477.0 MB | ||
| EGAF00005002761 | fastq.gz | 475.8 MB | ||
| EGAF00005002762 | fastq.gz | 496.0 MB | ||
| EGAF00005002763 | fastq.gz | 484.2 MB | ||
| EGAF00005002764 | fastq.gz | 498.6 MB | ||
| EGAF00005002765 | fastq.gz | 495.0 MB | ||
| EGAF00005002766 | fastq.gz | 505.5 MB | ||
| EGAF00005002767 | fastq.gz | 450.3 MB | ||
| EGAF00005002768 | fastq.gz | 462.1 MB | ||
| EGAF00005002769 | fastq.gz | 482.4 MB | ||
| EGAF00005002770 | fastq.gz | 494.7 MB | ||
| EGAF00005002771 | fastq.gz | 401.8 MB | ||
| EGAF00005002772 | fastq.gz | 416.1 MB | ||
| EGAF00005002773 | fastq.gz | 421.6 MB | ||
| EGAF00005002774 | fastq.gz | 434.4 MB | ||
| EGAF00005002775 | fastq.gz | 468.4 MB | ||
| EGAF00005002776 | fastq.gz | 479.5 MB | ||
| EGAF00005002777 | fastq.gz | 501.5 MB | ||
| EGAF00005002778 | fastq.gz | 514.6 MB | ||
| EGAF00005002779 | fastq.gz | 466.4 MB | ||
| EGAF00005002780 | fastq.gz | 481.1 MB | ||
| EGAF00005002781 | fastq.gz | 465.0 MB | ||
| EGAF00005002782 | fastq.gz | 479.7 MB | ||
| EGAF00005002783 | fastq.gz | 434.8 MB | ||
| EGAF00005002784 | fastq.gz | 467.8 MB | ||
| EGAF00005002785 | fastq.gz | 422.3 MB | ||
| EGAF00005002786 | fastq.gz | 456.7 MB | ||
| EGAF00005002787 | fastq.gz | 444.4 MB | ||
| EGAF00005002788 | fastq.gz | 483.0 MB | ||
| EGAF00005002789 | fastq.gz | 438.4 MB | ||
| EGAF00005002790 | fastq.gz | 480.5 MB | ||
| EGAF00005002791 | fastq.gz | 364.8 MB | ||
| EGAF00005002792 | fastq.gz | 398.6 MB | ||
| EGAF00005002793 | fastq.gz | 428.3 MB | ||
| EGAF00005002794 | fastq.gz | 468.9 MB | ||
| EGAF00005002795 | fastq.gz | 377.1 MB | ||
| EGAF00005002796 | fastq.gz | 411.5 MB | ||
| EGAF00005002797 | fastq.gz | 452.8 MB | ||
| EGAF00005002798 | fastq.gz | 489.9 MB | ||
| EGAF00005002799 | fastq.gz | 418.7 MB | ||
| EGAF00005002800 | fastq.gz | 453.6 MB | ||
| EGAF00005002801 | fastq.gz | 459.5 MB | ||
| EGAF00005002802 | fastq.gz | 494.1 MB | ||
| EGAF00005002803 | fastq.gz | 394.2 MB | ||
| EGAF00005002804 | fastq.gz | 426.7 MB | ||
| EGAF00005002805 | fastq.gz | 438.6 MB | ||
| EGAF00005002806 | fastq.gz | 472.7 MB | ||
| EGAF00005002807 | fastq.gz | 397.6 MB | ||
| EGAF00005002808 | fastq.gz | 428.0 MB | ||
| EGAF00005002809 | fastq.gz | 435.5 MB | ||
| EGAF00005002810 | fastq.gz | 475.3 MB | ||
| EGAF00005002811 | fastq.gz | 432.8 MB | ||
| EGAF00005002812 | fastq.gz | 471.2 MB | ||
| EGAF00005002813 | fastq.gz | 473.4 MB | ||
| EGAF00005002814 | fastq.gz | 486.9 MB | ||
| EGAF00005002815 | fastq.gz | 463.9 MB | ||
| EGAF00005002816 | fastq.gz | 474.9 MB | ||
| EGAF00005002817 | fastq.gz | 495.8 MB | ||
| EGAF00005002818 | fastq.gz | 510.1 MB | ||
| EGAF00005002819 | fastq.gz | 486.4 MB | ||
| EGAF00005002820 | fastq.gz | 506.8 MB | ||
| EGAF00005002821 | fastq.gz | 469.5 MB | ||
| EGAF00005002822 | fastq.gz | 487.3 MB | ||
| EGAF00005002823 | fastq.gz | 405.2 MB | ||
| EGAF00005002824 | fastq.gz | 419.2 MB | ||
| EGAF00005002825 | fastq.gz | 507.3 MB | ||
| EGAF00005002826 | fastq.gz | 517.8 MB | ||
| EGAF00005002827 | fastq.gz | 459.5 MB | ||
| EGAF00005002828 | fastq.gz | 471.0 MB | ||
| EGAF00005002829 | fastq.gz | 417.3 MB | ||
| EGAF00005002830 | fastq.gz | 424.2 MB | ||
| 96 Files (44.1 GB) | ||||