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Panel sequencing data of IMPACT2 patients

Patient samples were sequenced by Foundation Medicine, Inc. (Cambridge, MA), using FoundationOne CDx, a comprehensive NGS-based in vitro diagnostic device designed to capture cancer genes.

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IMPACT2 Data Access Policy

These terms and conditions govern access to the managed access datasets (details of which are set out in Appendix I) to which the User Institution has requested access. The User Institution agrees to be bound by these terms and conditions. Definitions Authorised Personnel: The individuals at the User Institution to whom DAC FOR HIGH-GRADE SEROUS OVARIAN CANCER (MDACC) grants access to the Data. This includes the User, the individuals listed in Appendix II and any other individuals for whom the User Institution subsequently requests access to the Data. Details of the initial Authorised Personnel are set out in Appendix II. Data: The managed access datasets to which the User Institution has requested access. Data Producers: DAC FOR HIGH-GRADE SEROUS OVARIAN CANCER (MDACC) and the collaborators listed in Appendix I responsible for the development, organisation, and oversight of these Data. External Collaborator: A collaborator of the User, working for an institution other than the User Institution. Project: The project for which the User Institution has requested access to these Data. A description of the Project is set out in Appendix II. Publications: Includes, without limitation, articles published in print journals, electronic journals, reviews, books, posters and other written and verbal presentations of research. Research Participant: An individual whose data form part of these Data. Research Purposes: Shall mean research that is seeking to advance the understanding of genetics and genomics, including the treatment of disorders, and work on statistical methods that may be applied to such research. User: The principal investigator for the Project. User Institution(s): The Institution that has requested access to the Data. DAC FOR HIGH-GRADE SEROUS OVARIAN CANCER (MDACC): The University of Texas MD Anderson Cancer Center 1. The User Institution agrees to only use these Data for the purpose of the Project (described in Appendix II) and only for Research Purposes. The User Institution further agrees that it will only use these Data for Research Purposes which are within the limitations (if any) set out in Appendix I. 2. The User Institution agrees to preserve, at all times, the confidentiality of these Data. In particular, it undertakes not to use, or attempt to use these Data to compromise or otherwise infringe the confidentiality of information on Research Participants. Without prejudice to the generality of the foregoing, the User Institution agrees to use at least the measures set out in Appendix I to protect these Data. 3. The User Institution agrees to protect the confidentiality of Research Participants in any research papers or publications that they prepare by taking all reasonable care to limit the possibility of identification. 4. The User Institution agrees not to link or combine these Data to other information or archived data available in a way that could re-identify the Research Participants, even if access to that data has been formally granted to the User Institution or is freely available without restriction. 5. The User Institution agrees only to transfer or disclose these Data, in whole or part, or any material derived from these Data, to the Authorised Personnel. Should the User Institution wish to share these Data with an External Collaborator, the External Collaborator must complete a separate application for access to these Data. 6. The User Institution agrees that the Data Producers, and all other parties involved in the creation, funding or protection of these Data: a) make no warranty or representation, express or implied as to the accuracy, quality or comprehensiveness of these Data; b) exclude to the fullest extent permitted by law all liability for actions, claims, proceedings, demands, losses (including but not limited to loss of profit), costs, awards damages and payments made by the Recipient that may arise (whether directly or indirectly) in any way whatsoever from the Recipient’s use of these Data or from the unavailability of, or break in access to, these Data for whatever reason and; c) bear no responsibility for the further analysis or interpretation of these Data. 7. The User Institution agrees to follow the Fort Lauderdale Guidelines (http://www.wellcome.ac.uk/stellent/groups/corporatesite/@policy_communications/documents/web_document/wtd003207.pdf ) and the Toronto Statement (http://www.nature.com/nature/journal/v461/n7261/full/461168a.html). This includes but is not limited to recognising the contribution of the Data Producers and including a proper acknowledgement in all reports or publications resulting from the use of these Data. 8. The User Institution agrees to follow the Publication Policy in Appendix III. This includes respecting the moratorium period for the Data Producers to publish the first peer-reviewed report describing and analysing these Data. 9. The User Institution agrees not to make intellectual property claims on these Data and not to use intellectual property protection in ways that would prevent or block access to, or use of, any element of these Data, or conclusion drawn directly from these Data. 10. The User Institution can elect to perform further research that would add intellectual and resource capital to these data and decide to obtain intellectual property rights on these downstream discoveries. In this case, the User Institution agrees to implement licensing policies that will not obstruct further research and to follow the U.S. National Institutes of Health Best Practices for the Licensing of Genomic Inventions (2005) (https://www.icgc.org/files/daco/NIH_BestPracticesLicensingGenomicInventions_2005_en.pdf ) in conformity with the Organisation for Economic Co-operation and Development Guidelines for the Licensing of the Genetic Inventions (2006) (http://www.oecd.org/science/biotech/36198812.pdf ). 11. The User Institution agrees to destroy/discard the Data held, once it is no longer used for the Project, unless obliged to retain the data for archival purposes in conformity with audit or legal requirements. 12. The User Institution will notify DAC FOR HIGH-GRADE SEROUS OVARIAN CANCER (MDACC) within 30 days of any changes or departures of Authorised Personnel. 13. The User Institution will notify DAC FOR HIGH-GRADE SEROUS OVARIAN CANCER (MDACC) prior to any significant changes to the protocol for the Project. 14. The User Institution will notify DAC FOR HIGH-GRADE SEROUS OVARIAN CANCER (MDACC) as soon as it becomes aware of a breach of the terms or conditions of this agreement. 15. DAC FOR HIGH-GRADE SEROUS OVARIAN CANCER (MDACC) may terminate this agreement by written notice to the User Institution. If this agreement terminates for any reason, the User Institution will be required to destroy any Data held, including copies and backup copies. This clause does not prevent the User Institution from retaining these data for archival purpose in conformity with audit or legal requirements. 16. The User Institution accepts that it may be necessary for the Data Producers to alter the terms of this agreement from time to time. As an example, this may include specific provisions relating to the Data required by Data Producers other than DAC FOR HIGH-GRADE SEROUS OVARIAN CANCER (MDACC). In the event that changes are required, the Data Producers or their appointed agent will contact the User Institution to inform it of the changes and the User Institution may elect to accept the changes or terminate the agreement. 17. If requested, the User Institution will allow data security and management documentation to be inspected to verify that it is complying with the terms of this agreement. 18. The User Institution agrees to distribute a copy of these terms to the Authorised Personnel. The User Institution will procure that the Authorised Personnel comply with the terms of this agreement. 19. This agreement (and any dispute, controversy, proceedings or claim of whatever nature arising out of this agreement or its formation) shall be construed, interpreted and governed by the laws of England and Wales and shall be subject to the exclusive jurisdiction of the English courts.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
Cancer Genomics

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00004974942 bam 3.0 GB
EGAF00004974943 bam 3.5 GB
EGAF00004974944 bam 3.3 GB
EGAF00004974945 bam 3.3 GB
EGAF00004974946 bam 3.5 GB
EGAF00004974947 bam 2.9 GB
EGAF00004974948 bam 2.7 GB
EGAF00004974949 bam 3.0 GB
EGAF00004974950 bam 3.1 GB
EGAF00004974951 bam 3.1 GB
EGAF00004974952 bam 3.0 GB
EGAF00004974953 bam 4.3 GB
EGAF00004974954 bam 3.4 GB
EGAF00004974955 bam 2.7 GB
EGAF00004974956 bam 3.2 GB
EGAF00004974957 bam 2.6 GB
EGAF00004974958 bam 3.4 GB
EGAF00004974959 bam 2.7 GB
EGAF00004974960 bam 3.1 GB
EGAF00004974961 bam 2.9 GB
EGAF00004974962 bam 2.7 GB
EGAF00004974963 bam 3.4 GB
EGAF00004974964 bam 3.1 GB
EGAF00004974965 bam 3.3 GB
EGAF00004974966 bam 2.9 GB
EGAF00004974967 bam 2.6 GB
EGAF00004974968 bam 5.2 GB
EGAF00004974969 bam 3.6 GB
EGAF00004974970 bam 2.9 GB
EGAF00004974971 bam 3.3 GB
EGAF00004974972 bam 2.7 GB
EGAF00004974973 bam 4.9 GB
EGAF00004974974 bam 2.8 GB
EGAF00004974975 bam 2.3 GB
EGAF00004974976 bam 3.2 GB
EGAF00004974977 bam 3.8 GB
EGAF00004974978 bam 4.2 GB
EGAF00004974979 bam 3.4 GB
EGAF00004974980 bam 1.8 GB
EGAF00004974981 bam 3.0 GB
EGAF00004974982 bam 4.8 GB
EGAF00004974983 bam 2.7 GB
EGAF00004974984 bam 3.6 GB
EGAF00004974985 bam 3.3 GB
EGAF00004974986 bam 3.6 GB
EGAF00004974987 bam 3.3 GB
EGAF00004974988 bam 3.0 GB
EGAF00004974989 bam 3.3 GB
EGAF00004974990 bam 2.9 GB
EGAF00004974991 bam 3.0 GB
EGAF00004974992 bam 4.2 GB
EGAF00004974993 bam 4.4 GB
EGAF00004974994 bam 3.8 GB
EGAF00004974995 bam 4.3 GB
EGAF00004974996 bam 6.4 GB
EGAF00004974997 bam 5.3 GB
EGAF00004974998 bam 4.1 GB
EGAF00004974999 bam 3.3 GB
EGAF00004975000 bam 4.1 GB
EGAF00004975001 bam 2.8 GB
EGAF00004975002 bam 3.8 GB
EGAF00004975003 bam 4.1 GB
EGAF00004975004 bam 4.0 GB
EGAF00004975005 bam 3.6 GB
EGAF00004975006 bam 3.5 GB
EGAF00004975007 bam 3.4 GB
EGAF00004975008 bam 4.2 GB
EGAF00004975009 bam 4.8 GB
EGAF00004975010 bam 3.0 GB
EGAF00004975011 bam 3.3 GB
EGAF00004975012 bam 3.0 GB
EGAF00004975013 bam 3.3 GB
EGAF00004975014 bam 3.9 GB
EGAF00004975015 bam 3.8 GB
EGAF00004975016 bam 4.1 GB
EGAF00004975017 bam 2.4 GB
EGAF00004975018 bam 3.0 GB
EGAF00004975019 bam 2.6 GB
EGAF00004975020 bam 3.7 GB
EGAF00004975021 bam 3.4 GB
EGAF00004975022 bam 2.8 GB
EGAF00004975023 bam 3.7 GB
EGAF00004975024 bam 2.8 GB
EGAF00004975025 bam 3.7 GB
EGAF00004975026 bam 4.9 GB
EGAF00004975027 bam 4.4 GB
EGAF00004975028 bam 3.9 GB
EGAF00004975029 bam 6.3 GB
EGAF00004975030 bam 4.7 GB
EGAF00004975031 bam 3.5 GB
EGAF00004975032 bam 3.5 GB
EGAF00004975033 bam 4.7 GB
EGAF00004975034 bam 3.8 GB
EGAF00004975035 bam 4.9 GB
EGAF00004975036 bam 4.0 GB
EGAF00004975037 bam 4.7 GB
EGAF00004975038 bam 4.9 GB
EGAF00004975039 bam 4.0 GB
EGAF00004975040 bam 3.9 GB
EGAF00004975041 bam 5.0 GB
EGAF00004975042 bam 5.2 GB
EGAF00004975043 bam 4.5 GB
EGAF00004975044 bam 4.7 GB
EGAF00004975045 bam 3.8 GB
EGAF00004975046 bam 4.4 GB
EGAF00004975047 bam 3.0 GB
EGAF00004975048 bam 3.8 GB
EGAF00004975049 bam 3.6 GB
EGAF00004975050 bam 3.6 GB
EGAF00004975051 bam 3.6 GB
EGAF00004975052 bam 3.7 GB
EGAF00004975053 bam 2.9 GB
EGAF00004975054 bam 4.1 GB
EGAF00004975055 bam 4.0 GB
EGAF00004975056 bam 3.9 GB
EGAF00004975057 bam 4.8 GB
EGAF00004975058 bam 4.3 GB
EGAF00004975059 bam 3.8 GB
EGAF00004975060 bam 3.5 GB
EGAF00004975061 bam 3.2 GB
EGAF00004975062 bam 5.1 GB
EGAF00004975063 bam 5.4 GB
EGAF00004975064 bam 3.6 GB
EGAF00004975065 bam 4.6 GB
EGAF00004975066 bam 5.3 GB
EGAF00004975067 bam 4.9 GB
EGAF00004975068 bam 4.1 GB
EGAF00004975069 bam 5.1 GB
EGAF00004975070 bam 4.4 GB
EGAF00004975071 bam 4.0 GB
EGAF00004975072 bam 3.8 GB
EGAF00004975073 bam 4.7 GB
EGAF00004975074 bam 4.6 GB
EGAF00004975075 bam 3.5 GB
EGAF00004975076 bam 4.8 GB
EGAF00004975077 bam 3.9 GB
EGAF00004975078 bam 4.3 GB
EGAF00004975079 bam 3.7 GB
EGAF00004975080 bam 3.6 GB
EGAF00004975081 bam 5.0 GB
EGAF00004975082 bam 5.3 GB
EGAF00004975083 bam 3.0 GB
EGAF00004975084 bam 5.1 GB
EGAF00004975085 bam 4.0 GB
EGAF00004975086 bam 3.9 GB
EGAF00004975087 bam 3.8 GB
EGAF00004975088 bam 3.3 GB
EGAF00004975089 bam 3.7 GB
EGAF00004975090 bam 3.1 GB
EGAF00004975091 bam 4.5 GB
EGAF00004975092 bam 5.3 GB
EGAF00004975093 bam 5.0 GB
EGAF00004975094 bam 5.0 GB
EGAF00004975095 bam 5.3 GB
EGAF00004975096 bam 4.8 GB
EGAF00004975097 bam 5.2 GB
EGAF00004975098 bam 3.6 GB
EGAF00004975099 bam 4.3 GB
EGAF00004975100 bam 3.1 GB
EGAF00004975101 bam 3.4 GB
EGAF00004975102 bam 3.7 GB
EGAF00004975103 bam 4.9 GB
EGAF00004975104 bam 4.1 GB
EGAF00004975105 bam 5.3 GB
EGAF00004975106 bam 3.0 GB
EGAF00004975107 bam 4.8 GB
EGAF00004975108 bam 2.3 GB
EGAF00004975109 bam 3.6 GB
EGAF00004975110 bam 2.3 GB
EGAF00004975111 bam 5.4 GB
EGAF00004975112 bam 3.1 GB
EGAF00004975113 bam 3.3 GB
EGAF00004975114 bam 4.6 GB
EGAF00004975115 bam 4.9 GB
EGAF00004975116 bam 4.7 GB
EGAF00004975117 bam 3.2 GB
EGAF00004975118 bam 3.5 GB
EGAF00004975119 bam 4.1 GB
EGAF00004975120 bam 4.2 GB
EGAF00004975121 bam 4.8 GB
EGAF00004975122 bam 3.9 GB
EGAF00004975123 bam 4.6 GB
EGAF00004975124 bam 4.6 GB
EGAF00004975125 bam 5.0 GB
EGAF00004975126 bam 4.9 GB
EGAF00004975127 bam 3.8 GB
EGAF00004975128 bam 3.5 GB
EGAF00004975129 bam 3.8 GB
EGAF00004975130 bam 3.3 GB
EGAF00004975131 bam 3.4 GB
EGAF00004975132 bam 4.7 GB
EGAF00004975133 bam 5.1 GB
EGAF00004975134 bam 4.8 GB
EGAF00004975135 bam 4.9 GB
EGAF00004975136 bam 4.9 GB
EGAF00004975137 bam 4.7 GB
EGAF00004975138 bam 3.4 GB
EGAF00004975139 bam 6.4 GB
EGAF00004975140 bam 3.8 GB
EGAF00004975141 bam 4.0 GB
EGAF00004975142 bam 4.6 GB
EGAF00004975143 bam 4.8 GB
EGAF00004975144 bam 4.7 GB
EGAF00004975145 bam 4.3 GB
EGAF00004975146 bam 5.0 GB
EGAF00004975147 bam 4.4 GB
EGAF00004975148 bam 5.0 GB
EGAF00004975149 bam 5.2 GB
EGAF00004975150 bam 5.3 GB
EGAF00004975151 bam 4.7 GB
EGAF00004975152 bam 2.7 GB
EGAF00004975153 bam 3.7 GB
EGAF00004975154 bam 5.2 GB
EGAF00004975155 bam 7.8 GB
EGAF00004975156 bam 4.9 GB
EGAF00004975157 bam 4.4 GB
EGAF00004975158 bam 4.9 GB
EGAF00004975159 bam 7.2 GB
EGAF00004975160 bam 4.3 GB
EGAF00004975161 bam 8.0 GB
EGAF00004975162 bam 3.2 GB
EGAF00004975163 bam 3.8 GB
EGAF00004975164 bam 4.5 GB
EGAF00004975165 bam 4.6 GB
EGAF00004975166 bam 4.4 GB
EGAF00004975167 bam 4.8 GB
EGAF00004975168 bam 4.5 GB
EGAF00004975169 bam 4.2 GB
EGAF00004975170 bam 4.5 GB
EGAF00004975171 bam 4.7 GB
EGAF00004975172 bam 4.6 GB
EGAF00004975173 bam 4.8 GB
EGAF00004975174 bam 4.9 GB
EGAF00004975175 bam 4.5 GB
EGAF00004975176 bam 4.6 GB
EGAF00004975177 bam 4.5 GB
EGAF00004975178 bam 4.3 GB
EGAF00004975179 bam 4.6 GB
EGAF00004975180 bam 4.5 GB
EGAF00004975181 bam 4.6 GB
EGAF00004975182 bam 4.5 GB
EGAF00004975183 bam 4.5 GB
EGAF00004975184 bam 4.5 GB
EGAF00004975185 bam 4.5 GB
EGAF00004975186 bam 4.7 GB
EGAF00004975187 bam 4.3 GB
EGAF00004975188 bam 4.5 GB
EGAF00004975189 bam 4.2 GB
EGAF00004975190 bam 4.5 GB
EGAF00004975191 bam 4.5 GB
EGAF00004975192 bam 4.5 GB
EGAF00004975193 bam 4.7 GB
EGAF00004975194 bam 4.4 GB
EGAF00004975195 bam 4.7 GB
EGAF00004975196 bam 4.1 GB
EGAF00004975197 bam 4.3 GB
EGAF00004975198 bam 4.3 GB
EGAF00004975199 bam 4.2 GB
EGAF00004975200 bam 3.3 GB
EGAF00004975201 bam 4.3 GB
EGAF00004975202 bam 4.2 GB
EGAF00004975203 bam 4.2 GB
EGAF00004975204 bam 4.1 GB
EGAF00004975205 bam 4.3 GB
EGAF00004975206 bam 4.4 GB
EGAF00004975207 bam 4.4 GB
EGAF00004975208 bam 4.4 GB
EGAF00004975209 bam 4.4 GB
EGAF00004975210 bam 4.5 GB
EGAF00004975211 bam 4.3 GB
EGAF00004975212 bam 4.6 GB
EGAF00004975213 bam 4.4 GB
EGAF00004975214 bam 4.5 GB
EGAF00004975215 bam 4.4 GB
EGAF00004975216 bam 4.4 GB
EGAF00004975217 bam 4.4 GB
EGAF00004975218 bam 4.1 GB
EGAF00004975219 bam 4.4 GB
EGAF00004975220 bam 4.4 GB
EGAF00004975221 bam 4.5 GB
EGAF00004975222 bam 4.1 GB
EGAF00004975223 bam 4.5 GB
EGAF00004975224 bam 4.2 GB
EGAF00004975225 bam 4.4 GB
EGAF00004975226 bam 4.4 GB
EGAF00004975227 bam 4.2 GB
EGAF00004975228 bam 4.3 GB
EGAF00004975229 bam 4.3 GB
EGAF00004975230 bam 5.0 GB
EGAF00004975231 bam 4.3 GB
EGAF00004975232 bam 4.4 GB
EGAF00004975233 bam 4.2 GB
EGAF00004975234 bam 4.2 GB
EGAF00004975235 bam 4.3 GB
EGAF00004975236 bam 4.2 GB
EGAF00004975237 bam 4.3 GB
EGAF00004975238 bam 4.3 GB
EGAF00004975239 bam 4.2 GB
EGAF00004975240 bam 4.6 GB
EGAF00004975241 bam 4.4 GB
EGAF00004975242 bam 4.2 GB
EGAF00004975243 bam 4.3 GB
EGAF00004975244 bam 4.2 GB
EGAF00004975245 bam 4.2 GB
EGAF00004975246 bam 4.7 GB
EGAF00004975247 bam 4.4 GB
EGAF00004975248 bam 4.3 GB
EGAF00004975253 bam 4.3 GB
EGAF00004975254 bam 4.4 GB
EGAF00004975255 bam 4.4 GB
EGAF00004975256 bam 4.3 GB
EGAF00004975257 bam 4.2 GB
EGAF00004975258 bam 4.1 GB
EGAF00004975259 bam 6.7 GB
EGAF00004975260 bam 4.3 GB
EGAF00004975261 bam 4.5 GB
EGAF00004980269 bam 4.2 GB
EGAF00004980270 bam 4.5 GB
EGAF00004980271 bam 4.4 GB
EGAF00004980272 bam 4.3 GB
320 Files (1.3 TB)