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CONTAGIOUS trial - COVID-19 16S dataset

16S amplicon data of nasopharyngeal swabs in a COVID-19 cohort recruited at UZ Leuven. The dataset contains a single experiment, comprising 150 runs corresponding to 125 unique samples. Runs comprise paired fastq files (2*250 bases) obtained from an Illumina MiSeq instrument.

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EC protocol data transfer

From the approved protocol by the Ethics Committee at UZ Leuven: Any participant records or datasets that are transferred to the Sponsor or any partners of the Sponsor will contain the Trial-specific participant identifier only; participant names or any information which would make the participant identifiable will not be transferred. All pseudonymized data relating to the Trial must be transmitted in a secure manner to the Sponsor. All source data will be kept at a secured location with restricted access at all times. These data must be collected and processed with adequate precautions to ensure confidentiality and compliance with applicable data protection laws and regulations and more in particular the EU General Data Protection Regulation 2016/679 (GDPR) and relevant national laws implementing the GDPR. Appropriate technical and organizational measures to protect the data against unauthorized disclosure or access, accidental or unlawful destruction, or accidental loss or alteration must be established. Trial staff whose responsibilities require access to personal data agree to keep the data confidential. The Investigator and the Participating Site(s) (as applicable) shall treat all information and data relating to the Trial disclosed to them as confidential and shall not disclose such information to any third parties or use such information for any purpose other than the objectives of the Trial as described in this protocol. The collection, processing and disclosure of personal data, such as participant health and medical information is subject to compliance with applicable laws and regulations regarding personal data protection and the processing of personal data. The Investigator will maintain all source documents and completed (e)CRFs that support the data collected from each Trial participant, and will maintain a Trial Master File (TMF)/Investigator Site File (ISF) containing all Trial documents as specified in ICH-GCP E6(R2) Chapter 8 entitled “Essential Documents for the Conduct of a Clinical Trial”, and as specified by applicable regulatory requirement(s). The Investigator will take appropriate measures to prevent accidental or premature destruction of these documents. Transfer of the pseudonymized data will be performed via a secured method of transfer taking into account all applicable security arrangements and regulations (such as the European General Data Protection Regulation). The receiving party will be bound by contractual agreement to keep the transferred data confidential at all times and to only process the data for the purpose of the Trial. To this end, appropriate Data Transfer Agreements (DTAs) will be established.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00004969300 fq.gz 6.6 MB
EGAF00004969301 fq.gz 4.9 MB
EGAF00004969302 fq.gz 3.8 MB
EGAF00004969303 fq.gz 2.8 MB
EGAF00004969304 fq.gz 6.4 MB
EGAF00004969305 fq.gz 4.6 MB
EGAF00004969306 fq.gz 6.6 MB
EGAF00004969307 fq.gz 4.8 MB
EGAF00004969308 fq.gz 7.8 MB
EGAF00004969309 fq.gz 5.6 MB
EGAF00004969310 fq.gz 6.6 MB
EGAF00004969311 fq.gz 4.5 MB
EGAF00004969312 fq.gz 1.8 MB
EGAF00004969313 fq.gz 1.4 MB
EGAF00004969314 fq.gz 6.2 MB
EGAF00004969315 fq.gz 4.3 MB
EGAF00004969316 fq.gz 176.5 kB
EGAF00004969317 fq.gz 130.5 kB
EGAF00004969318 fq.gz 6.3 MB
EGAF00004969319 fq.gz 4.3 MB
EGAF00004969320 fq.gz 6.8 MB
EGAF00004969321 fq.gz 4.8 MB
EGAF00004969322 fq.gz 8.7 MB
EGAF00004969323 fq.gz 6.1 MB
EGAF00004969324 fq.gz 4.8 MB
EGAF00004969325 fq.gz 3.1 MB
EGAF00004969326 fq.gz 4.0 MB
EGAF00004969327 fq.gz 3.0 MB
EGAF00004969328 fq.gz 1.8 MB
EGAF00004969329 fq.gz 1.4 MB
EGAF00004969330 fq.gz 5.5 MB
EGAF00004969331 fq.gz 4.0 MB
EGAF00004969332 fq.gz 6.6 MB
EGAF00004969333 fq.gz 3.9 MB
EGAF00004969334 fq.gz 10.1 MB
EGAF00004969335 fq.gz 8.5 MB
EGAF00004969336 fq.gz 5.4 MB
EGAF00004969337 fq.gz 3.8 MB
EGAF00004969338 fq.gz 8.5 MB
EGAF00004969339 fq.gz 5.3 MB
EGAF00004969340 fq.gz 5.6 MB
EGAF00004969341 fq.gz 4.1 MB
EGAF00004969342 fq.gz 4.9 MB
EGAF00004969343 fq.gz 3.5 MB
EGAF00004969344 fq.gz 2.6 MB
EGAF00004969345 fq.gz 1.9 MB
EGAF00004969346 fq.gz 5.1 MB
EGAF00004969347 fq.gz 3.8 MB
EGAF00004969348 fq.gz 5.1 MB
EGAF00004969349 fq.gz 3.3 MB
EGAF00004969350 fq.gz 792.4 kB
EGAF00004969351 fq.gz 609.4 kB
EGAF00004969352 fq.gz 5.1 MB
EGAF00004969353 fq.gz 3.3 MB
EGAF00004969354 fq.gz 4.8 MB
EGAF00004969355 fq.gz 3.5 MB
EGAF00004969356 fq.gz 4.7 MB
EGAF00004969357 fq.gz 3.5 MB
EGAF00004969358 fq.gz 4.1 MB
EGAF00004969359 fq.gz 4.0 MB
EGAF00004969360 fq.gz 5.3 MB
EGAF00004969361 fq.gz 4.2 MB
EGAF00004969362 fq.gz 7.1 MB
EGAF00004969363 fq.gz 4.2 MB
EGAF00004969364 fq.gz 3.9 MB
EGAF00004969365 fq.gz 2.5 MB
EGAF00004969366 fq.gz 5.4 MB
EGAF00004969367 fq.gz 4.1 MB
EGAF00004969368 fq.gz 6.9 MB
EGAF00004969369 fq.gz 5.2 MB
EGAF00004969370 fq.gz 6.8 MB
EGAF00004969371 fq.gz 4.8 MB
EGAF00004969372 fq.gz 6.7 MB
EGAF00004969373 fq.gz 4.7 MB
EGAF00004969374 fq.gz 1.9 MB
EGAF00004969375 fq.gz 1.4 MB
EGAF00004969376 fq.gz 6.5 MB
EGAF00004969377 fq.gz 4.9 MB
EGAF00004969378 fq.gz 7.9 MB
EGAF00004969379 fq.gz 5.6 MB
EGAF00004969380 fq.gz 3.4 MB
EGAF00004969381 fq.gz 2.6 MB
EGAF00004969382 fq.gz 4.5 MB
EGAF00004969383 fq.gz 3.8 MB
EGAF00004969384 fq.gz 5.8 MB
EGAF00004969385 fq.gz 4.3 MB
EGAF00004969386 fq.gz 4.0 MB
EGAF00004969387 fq.gz 2.9 MB
EGAF00004969388 fq.gz 5.1 MB
EGAF00004969389 fq.gz 3.8 MB
EGAF00004969390 fq.gz 7.7 MB
EGAF00004969391 fq.gz 5.4 MB
EGAF00004969392 fq.gz 7.1 MB
EGAF00004969393 fq.gz 5.3 MB
EGAF00004969394 fq.gz 6.0 MB
EGAF00004969395 fq.gz 5.4 MB
EGAF00004969396 fq.gz 10.6 MB
EGAF00004969397 fq.gz 8.3 MB
EGAF00004969398 fq.gz 7.7 MB
EGAF00004969399 fq.gz 5.6 MB
EGAF00004969400 fq.gz 5.0 MB
EGAF00004969401 fq.gz 3.5 MB
EGAF00004969402 fq.gz 6.1 MB
EGAF00004969403 fq.gz 4.8 MB
EGAF00004969404 fq.gz 4.1 MB
EGAF00004969405 fq.gz 3.0 MB
EGAF00004969406 fq.gz 7.1 MB
EGAF00004969407 fq.gz 6.3 MB
EGAF00004969408 fq.gz 708.2 kB
EGAF00004969409 fq.gz 552.0 kB
EGAF00004969410 fq.gz 5.8 MB
EGAF00004969411 fq.gz 3.9 MB
EGAF00004969412 fq.gz 22.2 MB
EGAF00004969413 fq.gz 12.7 MB
EGAF00004969414 fq.gz 4.1 MB
EGAF00004969415 fq.gz 3.1 MB
EGAF00004969416 fq.gz 4.4 MB
EGAF00004969417 fq.gz 3.3 MB
EGAF00004969418 fq.gz 6.9 MB
EGAF00004969419 fq.gz 4.7 MB
EGAF00004969420 fq.gz 6.9 MB
EGAF00004969421 fq.gz 4.2 MB
EGAF00004969422 fq.gz 4.5 MB
EGAF00004969423 fq.gz 3.4 MB
EGAF00004969424 fq.gz 3.0 MB
EGAF00004969425 fq.gz 2.3 MB
EGAF00004969426 fq.gz 5.1 MB
EGAF00004969427 fq.gz 3.8 MB
EGAF00004969428 fq.gz 5.3 MB
EGAF00004969429 fq.gz 3.7 MB
EGAF00004969430 fq.gz 8.4 MB
EGAF00004969431 fq.gz 5.5 MB
EGAF00004969432 fq.gz 849.5 kB
EGAF00004969433 fq.gz 613.3 kB
EGAF00004969434 fq.gz 973.9 kB
EGAF00004969435 fq.gz 704.1 kB
EGAF00004969436 fq.gz 6.6 MB
EGAF00004969437 fq.gz 4.2 MB
EGAF00004969438 fq.gz 5.3 MB
EGAF00004969439 fq.gz 4.0 MB
EGAF00004969440 fq.gz 4.1 MB
EGAF00004969441 fq.gz 3.3 MB
EGAF00004969442 fq.gz 5.5 MB
EGAF00004969443 fq.gz 3.5 MB
EGAF00004969444 fq.gz 5.4 MB
EGAF00004969445 fq.gz 4.0 MB
EGAF00004969446 fq.gz 1.0 MB
EGAF00004969447 fq.gz 847.1 kB
EGAF00004969448 fq.gz 6.0 MB
EGAF00004969449 fq.gz 4.4 MB
EGAF00004969450 fq.gz 7.2 MB
EGAF00004969451 fq.gz 5.3 MB
EGAF00004969452 fq.gz 5.5 MB
EGAF00004969453 fq.gz 3.9 MB
EGAF00004969454 fq.gz 1.5 MB
EGAF00004969455 fq.gz 1.8 MB
EGAF00004969456 fq.gz 4.4 MB
EGAF00004969457 fq.gz 3.3 MB
EGAF00004969458 fq.gz 5.3 MB
EGAF00004969459 fq.gz 3.6 MB
EGAF00004969460 fq.gz 5.3 MB
EGAF00004969461 fq.gz 3.8 MB
EGAF00004969462 fq.gz 5.1 MB
EGAF00004969463 fq.gz 3.8 MB
EGAF00004969464 fq.gz 3.5 MB
EGAF00004969465 fq.gz 2.7 MB
EGAF00004969466 fq.gz 5.7 MB
EGAF00004969467 fq.gz 3.8 MB
EGAF00004969468 fq.gz 2.8 MB
EGAF00004969469 fq.gz 2.1 MB
EGAF00004969470 fq.gz 215.3 kB
EGAF00004969471 fq.gz 158.9 kB
EGAF00004969472 fq.gz 4.9 MB
EGAF00004969473 fq.gz 3.5 MB
EGAF00004969474 fq.gz 5.2 MB
EGAF00004969475 fq.gz 4.0 MB
EGAF00004969476 fq.gz 5.5 MB
EGAF00004969477 fq.gz 3.8 MB
EGAF00004969478 fq.gz 4.9 MB
EGAF00004969479 fq.gz 3.5 MB
EGAF00004969480 fq.gz 6.4 MB
EGAF00004969481 fq.gz 5.0 MB
EGAF00004969482 fq.gz 4.8 MB
EGAF00004969483 fq.gz 3.5 MB
EGAF00004969484 fq.gz 6.5 MB
EGAF00004969485 fq.gz 4.8 MB
EGAF00004969486 fq.gz 6.4 MB
EGAF00004969487 fq.gz 5.0 MB
EGAF00004969488 fq.gz 5.4 MB
EGAF00004969489 fq.gz 4.2 MB
EGAF00004969490 fq.gz 3.7 MB
EGAF00004969491 fq.gz 2.6 MB
EGAF00004969492 fq.gz 4.6 MB
EGAF00004969493 fq.gz 3.4 MB
EGAF00004969494 fq.gz 6.0 MB
EGAF00004969495 fq.gz 4.9 MB
EGAF00004969496 fq.gz 2.8 MB
EGAF00004969497 fq.gz 2.3 MB
EGAF00004969498 fq.gz 6.4 MB
EGAF00004969499 fq.gz 4.4 MB
EGAF00004969500 fq.gz 6.1 MB
EGAF00004969501 fq.gz 4.8 MB
EGAF00004969502 fq.gz 1.6 MB
EGAF00004969503 fq.gz 1.2 MB
EGAF00004969504 fq.gz 6.0 MB
EGAF00004969505 fq.gz 4.4 MB
EGAF00004969506 fq.gz 6.5 MB
EGAF00004969507 fq.gz 4.5 MB
EGAF00004969508 fq.gz 36.1 kB
EGAF00004969509 fq.gz 27.1 kB
EGAF00004969510 fq.gz 6.7 MB
EGAF00004969511 fq.gz 4.9 MB
EGAF00004969512 fq.gz 7.8 MB
EGAF00004969513 fq.gz 5.4 MB
EGAF00004969514 fq.gz 34.7 MB
EGAF00004969515 fq.gz 25.1 MB
EGAF00004969516 fq.gz 6.5 MB
EGAF00004969517 fq.gz 4.2 MB
EGAF00004969518 fq.gz 6.7 MB
EGAF00004969519 fq.gz 5.0 MB
EGAF00004969520 fq.gz 6.1 MB
EGAF00004969521 fq.gz 4.5 MB
EGAF00004969522 fq.gz 6.5 MB
EGAF00004969523 fq.gz 4.4 MB
EGAF00004969524 fq.gz 6.1 MB
EGAF00004969525 fq.gz 4.5 MB
EGAF00004969526 fq.gz 5.7 MB
EGAF00004969527 fq.gz 4.2 MB
EGAF00004969528 fq.gz 5.8 MB
EGAF00004969529 fq.gz 3.3 MB
EGAF00004969530 fq.gz 6.1 MB
EGAF00004969531 fq.gz 4.1 MB
EGAF00004969532 fq.gz 5.5 MB
EGAF00004969533 fq.gz 3.8 MB
EGAF00004969534 fq.gz 4.5 MB
EGAF00004969535 fq.gz 3.4 MB
EGAF00004969536 fq.gz 5.2 MB
EGAF00004969537 fq.gz 3.6 MB
EGAF00004969538 fq.gz 993.8 kB
EGAF00004969539 fq.gz 778.1 kB
EGAF00004969540 fq.gz 1.3 MB
EGAF00004969541 fq.gz 981.0 kB
EGAF00004969542 fq.gz 6.0 MB
EGAF00004969543 fq.gz 4.0 MB
EGAF00004969544 fq.gz 6.0 MB
EGAF00004969545 fq.gz 4.3 MB
EGAF00004969546 fq.gz 2.6 MB
EGAF00004969547 fq.gz 1.9 MB
EGAF00004969548 fq.gz 5.9 MB
EGAF00004969549 fq.gz 4.5 MB
EGAF00004969550 fq.gz 5.3 MB
EGAF00004969551 fq.gz 4.0 MB
EGAF00004969552 fq.gz 4.2 MB
EGAF00004969553 fq.gz 3.1 MB
EGAF00004969554 fq.gz 5.6 MB
EGAF00004969555 fq.gz 4.2 MB
EGAF00004969556 fq.gz 895.7 kB
EGAF00004969557 fq.gz 658.0 kB
EGAF00004969558 fq.gz 1.4 MB
EGAF00004969559 fq.gz 1.1 MB
EGAF00004969560 fq.gz 7.3 MB
EGAF00004969561 fq.gz 5.1 MB
EGAF00004969562 fq.gz 5.9 MB
EGAF00004969563 fq.gz 4.6 MB
EGAF00004969564 fq.gz 81.3 kB
EGAF00004969565 fq.gz 60.0 kB
EGAF00004969566 fq.gz 164.8 kB
EGAF00004969567 fq.gz 134.1 kB
EGAF00004969568 fq.gz 195.5 kB
EGAF00004969569 fq.gz 143.5 kB
EGAF00004969570 fq.gz 417.7 kB
EGAF00004969571 fq.gz 328.8 kB
EGAF00004969572 fq.gz 167.7 kB
EGAF00004969573 fq.gz 124.7 kB
EGAF00004969574 fq.gz 316.8 kB
EGAF00004969575 fq.gz 246.6 kB
EGAF00004969576 fq.gz 33.6 kB
EGAF00004969577 fq.gz 25.8 kB
EGAF00004969578 fq.gz 207.4 kB
EGAF00004969579 fq.gz 151.4 kB
EGAF00004969580 fq.gz 114.9 kB
EGAF00004969581 fq.gz 96.0 kB
EGAF00004969582 fq.gz 41.4 kB
EGAF00004969583 fq.gz 29.3 kB
EGAF00004969584 fq.gz 185.9 kB
EGAF00004969585 fq.gz 155.2 kB
EGAF00004969586 fq.gz 249.5 kB
EGAF00004969587 fq.gz 206.1 kB
EGAF00004969588 fq.gz 1.9 MB
EGAF00004969589 fq.gz 1.4 MB
EGAF00004969590 fq.gz 1.2 MB
EGAF00004969591 fq.gz 873.4 kB
EGAF00004969592 fq.gz 6.8 MB
EGAF00004969593 fq.gz 4.9 MB
EGAF00004969594 fq.gz 2.1 MB
EGAF00004969595 fq.gz 1.6 MB
EGAF00004969596 fq.gz 3.9 MB
EGAF00004969597 fq.gz 4.8 MB
EGAF00004969598 fq.gz 5.9 MB
EGAF00004969599 fq.gz 4.5 MB
300 Files (1.3 GB)