Comprehensive RNA repository of tissue and plasma from patients with esophageal cancer or precursor lesions
A comprehensive RNA repository (both coding and non-coding) from 17 patients diagnosed with esophageal adenocarcinoma, high-grade dysplastic or non-dysplastic Barrett’s esophagus. Per patient, a blood plasma sample, and a healthy esophageal and disease tissue sample were collected. This dataset includes both mRNA and small RNA sequencing data (fastq.gz files) of all tissue and plasma samples. In total,102 RNA-seq libraries from 51 samples (17 plasma and 34 tissue samples) were sequenced (plasma mRNA libraries were sequenced twice).
- 102 samples
- DAC: EGAC00001001892
- Technology: NextSeq 500
Policy for the comprehensive RNA repository of tissue and plasma from patients with esophageal adenocarcinoma or precursor lesions, from the Center of Medical Genetics Ghent.
Data requests are handled by the Center for Medical Genetics Ghent and the legal department of Ghent University. A data transfer agreement will have to be signed in order for the data to be transferred.
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| EGAS00001004939 | Other |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Located in | |
|---|---|---|---|---|
| EGAF00004965173 | fastq.gz | 916.2 MB | ||
| EGAF00004965174 | fastq.gz | 948.6 MB | ||
| EGAF00004965175 | fastq.gz | 611.5 MB | ||
| EGAF00004965176 | fastq.gz | 642.3 MB | ||
| EGAF00004965177 | fastq.gz | 811.4 MB | ||
| EGAF00004965178 | fastq.gz | 1.3 GB | ||
| EGAF00004965179 | fastq.gz | 1.4 GB | ||
| EGAF00004965180 | fastq.gz | 848.8 MB | ||
| EGAF00004965181 | fastq.gz | 1.3 GB | ||
| EGAF00004965182 | fastq.gz | 1.4 GB | ||
| EGAF00004965183 | fastq.gz | 1.3 GB | ||
| EGAF00004965184 | fastq.gz | 1.4 GB | ||
| EGAF00004965185 | fastq.gz | 1.4 GB | ||
| EGAF00004965186 | fastq.gz | 1.5 GB | ||
| EGAF00004965187 | fastq.gz | 774.3 MB | ||
| EGAF00004965188 | fastq.gz | 1.5 GB | ||
| EGAF00004965189 | fastq.gz | 1.5 GB | ||
| EGAF00004965190 | fastq.gz | 800.6 MB | ||
| EGAF00004965191 | fastq.gz | 671.1 MB | ||
| EGAF00004965192 | fastq.gz | 727.1 MB | ||
| EGAF00004965193 | fastq.gz | 606.1 MB | ||
| EGAF00004965194 | fastq.gz | 642.9 MB | ||
| EGAF00004965195 | fastq.gz | 630.6 MB | ||
| EGAF00004965196 | fastq.gz | 531.6 MB | ||
| EGAF00004965197 | fastq.gz | 1.4 GB | ||
| EGAF00004965198 | fastq.gz | 1.4 GB | ||
| EGAF00004965199 | fastq.gz | 593.4 MB | ||
| EGAF00004965200 | fastq.gz | 842.8 MB | ||
| EGAF00004965201 | fastq.gz | 878.1 MB | ||
| EGAF00004965202 | fastq.gz | 829.8 MB | ||
| EGAF00004965203 | fastq.gz | 859.0 MB | ||
| EGAF00004965204 | fastq.gz | 567.4 MB | ||
| EGAF00004965205 | fastq.gz | 597.2 MB | ||
| EGAF00004965206 | fastq.gz | 1.3 GB | ||
| EGAF00004965207 | fastq.gz | 1.4 GB | ||
| EGAF00004965208 | fastq.gz | 1.3 GB | ||
| EGAF00004965209 | fastq.gz | 1.4 GB | ||
| EGAF00004965210 | fastq.gz | 816.6 MB | ||
| EGAF00004965211 | fastq.gz | 931.8 MB | ||
| EGAF00004965212 | fastq.gz | 845.0 MB | ||
| EGAF00004965213 | fastq.gz | 1.4 GB | ||
| EGAF00004965214 | fastq.gz | 1.5 GB | ||
| EGAF00004965215 | fastq.gz | 1.5 GB | ||
| EGAF00004965216 | fastq.gz | 1.6 GB | ||
| EGAF00004965217 | fastq.gz | 761.7 MB | ||
| EGAF00004965218 | fastq.gz | 788.9 MB | ||
| EGAF00004965219 | fastq.gz | 1.3 GB | ||
| EGAF00004965220 | fastq.gz | 1.4 GB | ||
| EGAF00004965221 | fastq.gz | 571.6 MB | ||
| EGAF00004965222 | fastq.gz | 626.7 MB | ||
| EGAF00004965223 | fastq.gz | 688.2 MB | ||
| EGAF00004965224 | fastq.gz | 725.4 MB | ||
| EGAF00004965225 | fastq.gz | 878.8 MB | ||
| EGAF00004965226 | fastq.gz | 907.7 MB | ||
| EGAF00004965227 | fastq.gz | 615.9 MB | ||
| EGAF00004965228 | fastq.gz | 647.1 MB | ||
| EGAF00004965229 | fastq.gz | 799.4 MB | ||
| EGAF00004965230 | fastq.gz | 837.5 MB | ||
| EGAF00004965231 | fastq.gz | 1.3 GB | ||
| EGAF00004965232 | fastq.gz | 1.3 GB | ||
| EGAF00004965233 | fastq.gz | 564.6 MB | ||
| EGAF00004965234 | fastq.gz | 600.0 MB | ||
| EGAF00004965235 | fastq.gz | 1.5 GB | ||
| EGAF00004965236 | fastq.gz | 1.6 GB | ||
| EGAF00004965237 | fastq.gz | 530.2 MB | ||
| EGAF00004965238 | fastq.gz | 552.3 MB | ||
| EGAF00004965239 | fastq.gz | 1.6 GB | ||
| EGAF00004965240 | fastq.gz | 1.7 GB | ||
| EGAF00004965241 | fastq.gz | 1.5 GB | ||
| EGAF00004965242 | fastq.gz | 1.5 GB | ||
| EGAF00004965243 | fastq.gz | 565.7 MB | ||
| EGAF00004965244 | fastq.gz | 1.5 GB | ||
| EGAF00004965245 | fastq.gz | 1.6 GB | ||
| EGAF00004965246 | fastq.gz | 620.8 MB | ||
| EGAF00004965247 | fastq.gz | 664.9 MB | ||
| EGAF00004965248 | fastq.gz | 909.6 MB | ||
| EGAF00004965249 | fastq.gz | 571.9 MB | ||
| EGAF00004965250 | fastq.gz | 594.1 MB | ||
| EGAF00004965251 | fastq.gz | 869.8 MB | ||
| EGAF00004965252 | fastq.gz | 917.0 MB | ||
| EGAF00004965253 | fastq.gz | 948.8 MB | ||
| EGAF00004965254 | fastq.gz | 736.4 MB | ||
| EGAF00004965255 | fastq.gz | 774.1 MB | ||
| EGAF00004965256 | fastq.gz | 733.9 MB | ||
| EGAF00004965257 | fastq.gz | 777.0 MB | ||
| EGAF00004965258 | fastq.gz | 1.3 GB | ||
| EGAF00004965259 | fastq.gz | 1.4 GB | ||
| EGAF00004965260 | fastq.gz | 1.5 GB | ||
| EGAF00004965261 | fastq.gz | 1.5 GB | ||
| EGAF00004965262 | fastq.gz | 1.4 GB | ||
| EGAF00004965263 | fastq.gz | 1.4 GB | ||
| EGAF00004965264 | fastq.gz | 1.4 GB | ||
| EGAF00004965265 | fastq.gz | 1.4 GB | ||
| EGAF00004965266 | fastq.gz | 1.4 GB | ||
| EGAF00004965267 | fastq.gz | 1.4 GB | ||
| EGAF00004965268 | fastq.gz | 689.4 MB | ||
| EGAF00004965269 | fastq.gz | 725.4 MB | ||
| EGAF00004965270 | fastq.gz | 1.5 GB | ||
| EGAF00004965271 | fastq.gz | 1.6 GB | ||
| EGAF00004965272 | fastq.gz | 384.0 MB | ||
| EGAF00004965273 | fastq.gz | 399.8 MB | ||
| EGAF00004965274 | fastq.gz | 1.3 GB | ||
| EGAF00004965275 | fastq.gz | 1.4 GB | ||
| EGAF00004965276 | fastq.gz | 1.4 GB | ||
| EGAF00004965277 | fastq.gz | 1.4 GB | ||
| EGAF00004965278 | fastq.gz | 672.2 MB | ||
| EGAF00004965279 | fastq.gz | 707.7 MB | ||
| EGAF00004965280 | fastq.gz | 849.4 MB | ||
| EGAF00004965281 | fastq.gz | 878.6 MB | ||
| EGAF00004965282 | fastq.gz | 937.8 MB | ||
| EGAF00004965283 | fastq.gz | 635.8 MB | ||
| EGAF00004965284 | fastq.gz | 671.4 MB | ||
| EGAF00004965285 | fastq.gz | 676.5 MB | ||
| EGAF00004965286 | fastq.gz | 799.7 MB | ||
| EGAF00004965287 | fastq.gz | 827.5 MB | ||
| EGAF00004965288 | fastq.gz | 511.4 MB | ||
| EGAF00004965289 | fastq.gz | 771.3 MB | ||
| EGAF00004965290 | fastq.gz | 801.2 MB | ||
| EGAF00004965291 | fastq.gz | 613.0 MB | ||
| EGAF00004965292 | fastq.gz | 649.5 MB | ||
| EGAF00004965293 | fastq.gz | 1.4 GB | ||
| EGAF00004965294 | fastq.gz | 1.5 GB | ||
| EGAF00004965295 | fastq.gz | 611.8 MB | ||
| EGAF00004965296 | fastq.gz | 1.2 GB | ||
| EGAF00004965297 | fastq.gz | 1.3 GB | ||
| EGAF00004965298 | fastq.gz | 500.2 MB | ||
| EGAF00004965299 | fastq.gz | 1.6 GB | ||
| EGAF00004965300 | fastq.gz | 1.6 GB | ||
| EGAF00004965301 | fastq.gz | 812.1 MB | ||
| EGAF00004965302 | fastq.gz | 830.7 MB | ||
| EGAF00004965303 | fastq.gz | 1.3 GB | ||
| EGAF00004965304 | fastq.gz | 1.3 GB | ||
| EGAF00004965305 | fastq.gz | 1.3 GB | ||
| EGAF00004965306 | fastq.gz | 1.4 GB | ||
| EGAF00004965307 | fastq.gz | 794.5 MB | ||
| EGAF00004965308 | fastq.gz | 1.2 GB | ||
| EGAF00004965309 | fastq.gz | 1.3 GB | ||
| EGAF00004965310 | fastq.gz | 870.1 MB | ||
| EGAF00004965311 | fastq.gz | 581.3 MB | ||
| EGAF00004965312 | fastq.gz | 1.4 GB | ||
| EGAF00004965313 | fastq.gz | 1.5 GB | ||
| EGAF00004965314 | fastq.gz | 850.1 MB | ||
| EGAF00004965315 | fastq.gz | 928.2 MB | ||
| EGAF00004965316 | fastq.gz | 803.9 MB | ||
| EGAF00004965317 | fastq.gz | 686.5 MB | ||
| EGAF00004965318 | fastq.gz | 731.3 MB | ||
| EGAF00004965319 | fastq.gz | 569.4 MB | ||
| EGAF00004965320 | fastq.gz | 496.5 MB | ||
| EGAF00004965321 | fastq.gz | 651.0 MB | ||
| EGAF00004965322 | fastq.gz | 679.6 MB | ||
| EGAF00004965323 | fastq.gz | 537.5 MB | ||
| EGAF00004965324 | fastq.gz | 941.9 MB | ||
| EGAF00004965325 | fastq.gz | 874.3 MB | ||
| EGAF00004965326 | fastq.gz | 1.0 GB | ||
| EGAF00004965327 | fastq.gz | 844.6 MB | ||
| EGAF00004965328 | fastq.gz | 913.0 MB | ||
| EGAF00004965329 | fastq.gz | 1.1 GB | ||
| EGAF00004965330 | fastq.gz | 648.7 MB | ||
| EGAF00004965331 | fastq.gz | 683.4 MB | ||
| EGAF00004965332 | fastq.gz | 828.0 MB | ||
| EGAF00004965333 | fastq.gz | 858.6 MB | ||
| EGAF00004965334 | fastq.gz | 1.4 GB | ||
| EGAF00004965335 | fastq.gz | 1.5 GB | ||
| EGAF00004965336 | fastq.gz | 1.4 GB | ||
| EGAF00004965337 | fastq.gz | 1.5 GB | ||
| EGAF00004965338 | fastq.gz | 861.5 MB | ||
| EGAF00004965339 | fastq.gz | 575.7 MB | ||
| EGAF00004965340 | fastq.gz | 725.6 MB | ||
| EGAF00004965341 | fastq.gz | 985.6 MB | ||
| EGAF00004965342 | fastq.gz | 1.3 GB | ||
| EGAF00004965343 | fastq.gz | 863.4 MB | ||
| EGAF00004965344 | fastq.gz | 713.6 MB | ||
| EGAF00004965345 | fastq.gz | 963.0 MB | ||
| EGAF00004965346 | fastq.gz | 438.8 MB | ||
| EGAF00004965347 | fastq.gz | 526.5 MB | ||
| EGAF00004965348 | fastq.gz | 515.1 MB | ||
| EGAF00004965349 | fastq.gz | 696.9 MB | ||
| EGAF00004965350 | fastq.gz | 1.5 GB | ||
| EGAF00004965351 | fastq.gz | 1.5 GB | ||
| EGAF00004965352 | fastq.gz | 738.1 MB | ||
| EGAF00004965353 | fastq.gz | 756.9 MB | ||
| EGAF00004965354 | fastq.gz | 778.7 MB | ||
| EGAF00004965355 | fastq.gz | 703.2 MB | ||
| EGAF00004965356 | fastq.gz | 747.6 MB | ||
| EGAF00004965357 | fastq.gz | 552.0 MB | ||
| 185 Files (182.7 GB) | ||||