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Illumina 5'end RNA sequencing

The dataset contains 200 fastq files of Illumina 5'end RNA sequencing data of 50 PBMC samples. The paired-end data includes 100 fastq files (R1 and R2) of 50 full-length cDNA sequencing libraries and 100 fastq files (R1 and R2) of 50 HLA amplicon sequencing libraries.

Request Access

The terms and conditions defined in the policy govern access to the managed HLA RNAseq dataset.

1. Definitions Authorized Personnel: The individuals at the User Institution to whom FRCBS grants access to the Data. This includes the User, the individuals listed in Appendix II and any other individuals for whom the User Institution subsequently requests access to the Data. Details of the initial Authorized Personnel are set out in Appendix II. Data: The managed access datasets to which the User Institution has requested access. Data may include personal data as defined in the EU General Data Protection Regulation (2016/679) (“GDPR”). Data Producers: FRCBS and the collaborators listed in Appendix I responsible for the development, organization, and oversight of these Data. External Collaborator: A collaborator of the User, working for an institution other than the User Institution. Project: The project for which the User Institution has requested access to these Data. A description of the Project is set out in Appendix II. Publications: Includes, without limitation, articles published in print journals, electronic journals, reviews, books, posters and other written and verbal presentations of research. Research Participant: An individual whose data form part of these Data. Research Purposes: non-commercial research that is seeking to advance the understanding of genetics and genomics, including the treatment of disorders, and work on statistical methods that may be applied to such research. User: The principal investigator for the Project at the User Institution   2. Terms and Conditions 2.1. The User Institution agrees to only use these Data for the purpose of the Project (described in Appendix II) and only for Research Purposes. The User Institution further agrees that it will only use these Data for Research Purposes which are within the limitations (if any) set out in Appendix I. 2.2. The User Institution agrees to use all reasonable efforts to preserve, at all times, the confidentiality of these Data. In particular, it undertakes not to use, or attempt to use these Data to compromise or otherwise infringe the confidentiality of information on Research Participants. Without prejudice to the generality of the foregoing, the User Institution agrees to use at least the measures set out in Appendix I to protect these Data. 2.3. The User Institution agrees to use reasonable efforts to protect the confidentiality of Research Participants in any research papers or publications that they prepare by taking reasonable care to limit the possibility of identification. 2.4. The User Institution agrees not to link or combine these Data to other information or archived data available in a way that could re-identify the Research Participants, even if access to that data has been formally granted to the User Institution or is freely available without restriction. 2.5. The User Institution agrees only to transfer or disclose these Data, in whole or part, or any material derived from these Data, to the Authorized Personnel. Should the User Institution wish to share these Data with an External Collaborator, the External Collaborator must complete a separate application for access to these Data. 2.6. The User Institution agrees that the Data Producers, and all other parties involved in the creation, funding or protection of these Data: a) make no warranty or representation, express or implied as to the accuracy, quality or comprehensiveness of these Data; b) exclude to the fullest extent permitted by law all liability for actions, claims, proceedings, demands, losses (including but not limited to loss of profit), costs, awards damages and payments made by the Recipient that may arise (whether directly or indirectly) in any way whatsoever from the Recipient’s use of these Data or from the unavailability of, or break in access to, these Data for whatever reason and; c) bear no responsibility for the further analysis or interpretation of these Data. Notwithstanding the above, the User Institution will not be responsible for claims arising from or related to the negligence or willful misconduct of the Data Producers, other parties involved in the creation, funding or protection of these Data, or their officers, agents or employees, or any person or entity not subject to User Institution’s supervision or control. 2.7. The User Institution agrees to follow the Fort Lauderdale Guidelines (attached as Appendix IV) and the Toronto Statement (as attached in Appendix III). This includes but is not limited to recognizing the contribution of the Data Producers and including a proper acknowledgement in all reports or publications resulting from the use of these Data. 2.8. The User Institution agrees to follow the Publication Policy in Appendix III. This includes respecting the moratorium period for the Data Producers to publish the first peer-reviewed report describing and analyzing these Data. 2.9. The User Institution agrees not to make intellectual property claims on these Data and not to use intellectual property protection in ways that would prevent or block access to, or use of, any element of these Data. 2.10. The User Institution can elect to perform further research that would add intellectual and resource capital to these Data and decide to obtain intellectual property rights on these downstream discoveries. In this case, the User Institution agrees to implement licensing policies that will not obstruct further non-commercial research and to follow the U.S. National Institutes of Health Best Practices for the Licensing of Genomic Inventions (2005) (attached as Appendix V ) in conformity with the Organisation for Economic Co-operation and Development Guidelines for the Licensing of the Genetic Inventions (2006) (attached as Appendix VI). 2.11. The User Institution agrees to destroy/discard the Data held, once it is no longer used for the Project, unless obliged to retain the Data for archival purposes in conformity with audit or legal requirements. 2.12. The User Institution will notify FRCBS within 30 days of any changes or departures of Authorized Personnel. 2.13. The User Institution will notify FRCBS prior to any significant changes to the protocol for the Project. 2.14. The User Institution will promptly notify FRCBS should it become aware of a breach of the terms or conditions of this agreement. 2.15. Either Party may terminate this agreement for any reason by provided thirty (30) days prior written notice to the other Party. If this agreement terminates for any reason, the User Institution will be required to destroy any Data held, including copies and backup copies. The User Institution accepts that it may be necessary for the Data Producers to alter the terms of this agreement from time to time. In the event that changes are required, the Data Producers or their appointed agent will contact the User Institution to inform it of the changes and the User Institution may elect to accept the changes or terminate the agreement. Any such changes shall be implemented upon execution of a dually signed amendment to this Agreement. 2.16. If requested, upon advance written notice, and to the extent necessary, during mutually agreeable normal administrative business hours the User Institution will allow data security and management documentation to be inspected to verify that it is complying with the terms of this agreement. Any such visits shall be scheduled in coordination with User Institution, and shall be subject to compliance with User Institution’s reasonable measures for confidentiality, safety and security, and shall also be subject to compliance with generally applicable premises rules at User Institution. 2.17. The User Institution agrees to distribute a copy of these terms to the Authorized Personnel. The User Institution will require that the Authorized Personnel comply with the terms of this agreement. 2.18. The User Institution understands that upon receipt of the Data that includes or constitutes Personal Data, it will become a data controller as meant in the General Data Protection Regulation (2016/679) (“GDPR”). 2.19. IF THE USER INSTITUTION IS NOT LOCATED WITHIN THE EEA / A COUNTRY WITH AN ADEQUACY DECISION: As a data controller, the User Institution shall comply with, the terms and conditions set out in the Controller-Controller Standard Contractual Clauses appended to this Agreement as Appendix VII. In case of discrepancy between the provisions of Appendix VII and any other document included in this Agreement and/or its appendices, the provision included in Appendix VII shall prevail. 2.20 FRCBS or its representative may at any moment inform the User Institution of a Research Participant withdrawing their consent or exercising their rights as a data subject under the GDPR. The User Institution shall perform all actions necessary in order to fulfil the rights of the Research Participant. 2.21 This Agreement (and any dispute, controversy, proceedings or claim of whatever nature arising out of this agreement or its formation) shall be construed, interpreted and governed by the laws of Finland and shall be subject to the exclusive jurisdiction of the Finnish courts. 2.22 This Agreement may be executed in counterparts, each and every one of which shall be deemed an original and all of which together shall constitute one and the same instrument. Each party may execute the Agreement in Adobe Portable Document Format (PDF) sent by electronic mail or as otherwise agreed between the parties. PDF signatures of authorised signatories of the parties shall be deemed to be original signatures, shall be valid and binding upon the parties, and, upon delivery, shall constitute due execution of this Agreement.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001004931 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00004963710 fastq.gz 34.0 MB
EGAF00004963711 fastq.gz 63.6 MB
EGAF00004963712 fastq.gz 27.4 MB
EGAF00004963713 fastq.gz 52.0 MB
EGAF00004963714 fastq.gz 21.9 MB
EGAF00004963715 fastq.gz 41.3 MB
EGAF00004963716 fastq.gz 1.0 MB
EGAF00004963717 fastq.gz 2.1 MB
EGAF00004963718 fastq.gz 20.6 MB
EGAF00004963719 fastq.gz 37.3 MB
EGAF00004963720 fastq.gz 805.7 kB
EGAF00004963721 fastq.gz 1.5 MB
EGAF00004963722 fastq.gz 1.2 MB
EGAF00004963723 fastq.gz 2.2 MB
EGAF00004963724 fastq.gz 734.2 kB
EGAF00004963725 fastq.gz 1.4 MB
EGAF00004963726 fastq.gz 1.7 MB
EGAF00004963727 fastq.gz 3.3 MB
EGAF00004963728 fastq.gz 21.6 MB
EGAF00004963729 fastq.gz 39.6 MB
EGAF00004963730 fastq.gz 21.0 MB
EGAF00004963731 fastq.gz 38.4 MB
EGAF00004963732 fastq.gz 1.2 MB
EGAF00004963733 fastq.gz 2.2 MB
EGAF00004963734 fastq.gz 41.9 MB
EGAF00004963735 fastq.gz 75.1 MB
EGAF00004963736 fastq.gz 707.0 kB
EGAF00004963737 fastq.gz 1.4 MB
EGAF00004963738 fastq.gz 665.6 kB
EGAF00004963739 fastq.gz 1.3 MB
EGAF00004963740 fastq.gz 34.4 MB
EGAF00004963741 fastq.gz 63.1 MB
EGAF00004963742 fastq.gz 36.8 MB
EGAF00004963743 fastq.gz 69.8 MB
EGAF00004963744 fastq.gz 42.3 MB
EGAF00004963745 fastq.gz 76.1 MB
EGAF00004963746 fastq.gz 19.3 MB
EGAF00004963747 fastq.gz 35.9 MB
EGAF00004963748 fastq.gz 1.8 MB
EGAF00004963749 fastq.gz 3.4 MB
EGAF00004963750 fastq.gz 32.6 MB
EGAF00004963751 fastq.gz 60.3 MB
EGAF00004963752 fastq.gz 1.5 MB
EGAF00004963753 fastq.gz 2.9 MB
EGAF00004963754 fastq.gz 45.2 MB
EGAF00004963755 fastq.gz 81.7 MB
EGAF00004963756 fastq.gz 451.0 kB
EGAF00004963757 fastq.gz 852.8 kB
EGAF00004963758 fastq.gz 1.2 MB
EGAF00004963759 fastq.gz 2.2 MB
EGAF00004963760 fastq.gz 32.4 MB
EGAF00004963761 fastq.gz 58.7 MB
EGAF00004963762 fastq.gz 52.2 MB
EGAF00004963763 fastq.gz 96.8 MB
EGAF00004963764 fastq.gz 31.5 MB
EGAF00004963765 fastq.gz 58.9 MB
EGAF00004963766 fastq.gz 12.5 MB
EGAF00004963767 fastq.gz 23.4 MB
EGAF00004963768 fastq.gz 77.3 MB
EGAF00004963769 fastq.gz 138.4 MB
EGAF00004963770 fastq.gz 3.1 MB
EGAF00004963771 fastq.gz 5.9 MB
EGAF00004963772 fastq.gz 325.2 kB
EGAF00004963773 fastq.gz 618.2 kB
EGAF00004963774 fastq.gz 25.4 MB
EGAF00004963775 fastq.gz 48.4 MB
EGAF00004963776 fastq.gz 29.5 MB
EGAF00004963777 fastq.gz 54.4 MB
EGAF00004963778 fastq.gz 714.8 kB
EGAF00004963779 fastq.gz 1.3 MB
EGAF00004963780 fastq.gz 18.9 MB
EGAF00004963781 fastq.gz 36.2 MB
EGAF00004963782 fastq.gz 31.1 MB
EGAF00004963783 fastq.gz 56.7 MB
EGAF00004963784 fastq.gz 33.8 MB
EGAF00004963785 fastq.gz 63.4 MB
EGAF00004963786 fastq.gz 1.1 MB
EGAF00004963787 fastq.gz 2.0 MB
EGAF00004963788 fastq.gz 681.5 kB
EGAF00004963789 fastq.gz 1.3 MB
EGAF00004963790 fastq.gz 1.3 MB
EGAF00004963791 fastq.gz 2.5 MB
EGAF00004963792 fastq.gz 31.3 MB
EGAF00004963793 fastq.gz 58.9 MB
EGAF00004963794 fastq.gz 2.1 MB
EGAF00004963795 fastq.gz 4.0 MB
EGAF00004963796 fastq.gz 620.1 kB
EGAF00004963797 fastq.gz 1.2 MB
EGAF00004963798 fastq.gz 25.5 MB
EGAF00004963799 fastq.gz 46.9 MB
EGAF00004963800 fastq.gz 19.7 MB
EGAF00004963801 fastq.gz 37.4 MB
EGAF00004963802 fastq.gz 610.1 kB
EGAF00004963803 fastq.gz 1.2 MB
EGAF00004963804 fastq.gz 20.0 MB
EGAF00004963805 fastq.gz 36.3 MB
EGAF00004963806 fastq.gz 2.1 MB
EGAF00004963807 fastq.gz 4.0 MB
EGAF00004963808 fastq.gz 902.0 kB
EGAF00004963809 fastq.gz 1.7 MB
EGAF00004963810 fastq.gz 869.0 kB
EGAF00004963811 fastq.gz 1.7 MB
EGAF00004963812 fastq.gz 24.4 MB
EGAF00004963813 fastq.gz 46.7 MB
EGAF00004963814 fastq.gz 667.9 kB
EGAF00004963815 fastq.gz 1.2 MB
EGAF00004963816 fastq.gz 974.3 kB
EGAF00004963817 fastq.gz 1.9 MB
EGAF00004963818 fastq.gz 51.9 MB
EGAF00004963819 fastq.gz 94.3 MB
EGAF00004963820 fastq.gz 2.1 MB
EGAF00004963821 fastq.gz 3.9 MB
EGAF00004963822 fastq.gz 16.7 MB
EGAF00004963823 fastq.gz 31.1 MB
EGAF00004963824 fastq.gz 27.1 MB
EGAF00004963825 fastq.gz 48.5 MB
EGAF00004963826 fastq.gz 970.8 kB
EGAF00004963827 fastq.gz 1.9 MB
EGAF00004963828 fastq.gz 1.0 MB
EGAF00004963829 fastq.gz 1.9 MB
EGAF00004963830 fastq.gz 11.6 MB
EGAF00004963831 fastq.gz 21.7 MB
EGAF00004963832 fastq.gz 2.1 MB
EGAF00004963833 fastq.gz 4.0 MB
EGAF00004963834 fastq.gz 1.0 MB
EGAF00004963835 fastq.gz 2.0 MB
EGAF00004963836 fastq.gz 660.1 kB
EGAF00004963837 fastq.gz 1.3 MB
EGAF00004963838 fastq.gz 21.3 MB
EGAF00004963839 fastq.gz 40.8 MB
EGAF00004963840 fastq.gz 38.4 MB
EGAF00004963841 fastq.gz 71.9 MB
EGAF00004963842 fastq.gz 790.0 kB
EGAF00004963843 fastq.gz 1.5 MB
EGAF00004963844 fastq.gz 689.1 kB
EGAF00004963845 fastq.gz 1.3 MB
EGAF00004963846 fastq.gz 5.3 MB
EGAF00004963847 fastq.gz 9.7 MB
EGAF00004963848 fastq.gz 89.9 MB
EGAF00004963849 fastq.gz 164.5 MB
EGAF00004963850 fastq.gz 1.4 MB
EGAF00004963851 fastq.gz 2.8 MB
EGAF00004963852 fastq.gz 36.5 MB
EGAF00004963853 fastq.gz 66.6 MB
EGAF00004963854 fastq.gz 14.6 MB
EGAF00004963855 fastq.gz 26.6 MB
EGAF00004963856 fastq.gz 701.8 kB
EGAF00004963857 fastq.gz 1.3 MB
EGAF00004963858 fastq.gz 654.8 kB
EGAF00004963859 fastq.gz 1.3 MB
EGAF00004963860 fastq.gz 776.3 kB
EGAF00004963861 fastq.gz 1.5 MB
EGAF00004963862 fastq.gz 574.2 kB
EGAF00004963863 fastq.gz 1.1 MB
EGAF00004963864 fastq.gz 14.6 MB
EGAF00004963865 fastq.gz 28.1 MB
EGAF00004963866 fastq.gz 29.0 MB
EGAF00004963867 fastq.gz 55.6 MB
EGAF00004963868 fastq.gz 767.7 kB
EGAF00004963869 fastq.gz 1.5 MB
EGAF00004963870 fastq.gz 27.8 MB
EGAF00004963871 fastq.gz 50.2 MB
EGAF00004963872 fastq.gz 1.3 MB
EGAF00004963873 fastq.gz 2.5 MB
EGAF00004963874 fastq.gz 16.0 MB
EGAF00004963875 fastq.gz 29.4 MB
EGAF00004963876 fastq.gz 31.3 MB
EGAF00004963877 fastq.gz 55.7 MB
EGAF00004963878 fastq.gz 795.3 kB
EGAF00004963879 fastq.gz 1.5 MB
EGAF00004963880 fastq.gz 21.1 MB
EGAF00004963881 fastq.gz 39.3 MB
EGAF00004963882 fastq.gz 52.9 MB
EGAF00004963883 fastq.gz 96.8 MB
EGAF00004963884 fastq.gz 68.8 MB
EGAF00004963885 fastq.gz 121.5 MB
EGAF00004963886 fastq.gz 45.1 MB
EGAF00004963887 fastq.gz 85.6 MB
EGAF00004963888 fastq.gz 691.3 kB
EGAF00004963889 fastq.gz 1.3 MB
EGAF00004963890 fastq.gz 24.1 MB
EGAF00004963891 fastq.gz 44.2 MB
EGAF00004963892 fastq.gz 22.1 MB
EGAF00004963893 fastq.gz 40.3 MB
EGAF00004963894 fastq.gz 615.6 kB
EGAF00004963895 fastq.gz 1.2 MB
EGAF00004963896 fastq.gz 642.4 kB
EGAF00004963897 fastq.gz 1.2 MB
EGAF00004963898 fastq.gz 859.2 kB
EGAF00004963899 fastq.gz 1.6 MB
EGAF00004963900 fastq.gz 1.8 MB
EGAF00004963901 fastq.gz 3.4 MB
EGAF00004963902 fastq.gz 442.1 kB
EGAF00004963903 fastq.gz 843.5 kB
EGAF00004963904 fastq.gz 1.2 MB
EGAF00004963905 fastq.gz 2.2 MB
EGAF00004963906 fastq.gz 2.3 MB
EGAF00004963907 fastq.gz 4.2 MB
EGAF00004963908 fastq.gz 812.4 kB
EGAF00004963909 fastq.gz 1.6 MB
200 Files (4.5 GB)