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T-VEC CBCL scRNA

We are presenting raw and processed data of our study where we analyze fine-needle aspirate (FNA) samples of primary cutaneous B-cell lymphoma patients undergoing oncolytic virotherapy (https://clinicaltrials.gov/ct2/show/NCT03458117). We are uploading single cell RNA-sequencing and immune repertoire profiling data of 29 FNA samples from four pCBCL patients. The four patients have three different subtypes of primary cutaneous B-cell lymphoma: pCDLBCL-LT, pCFCL and pCMZL. The samples are taken at different time points following T-VEC injection (from baseline up to 91 days after injection). We are uploading the sequences in BAM format and the outputs of the cellranger pipeline (count matrices and filtered VDJ contigs) in CSV format.

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Lymphoma scRNA Policy

Data access agreement In signing this agreement, you are agreeing to be bound by the terms and conditions of access set out in this agreement. In signing this Agreement: 1. You agree to use the data only for the advancement of medical research, according to the consent obtained from sample donors. 2. You agree not to use the data for the creation of products for sale or for any commercial purpose. 3. You agree to preserve, at all times, the confidentiality of information and Data pertaining to Data Subjects. In particular, You undertake not to use, or attempt to use the Data to compromise or otherwise infringe the confidentiality of information on Data Subjects and their right to privacy. 4. You agree not to attempt to link the data provided under this agreement to other information or archive data available for the data sets provided, even if access to that data has been formally granted to you, or it is freely available without restriction, without specific permission being sought from the relevent access committees. 5. You agree not to transfer or disclose the data, in whole or part, or any identifiable material derived from the Data, to others, except as necessary for data/safety monitoring or programme management. Should you wish to share the Data with a collaborator outwith the same Institution, the third party must make a separate application for access to the data. 6. You agree to use the data for the approved purpose and project described in your application; use of the data for a new purpose or project will require a new application and approval. 7. You agree to acknowledge in any work based in whole or part on the data, the published paper from which the data derives, and the repository it was obtained from. 8. You accept that the Data Access Committee, the original data creators, depositors or copyright holders, or the funders of the data or any part of the data supplied: a) bear no legal responsibility for the accuracy or comprehensiveness of the data; and b) accept no liability for indirect, consequential, or incidental, damages or losses arising from use of the data, or from the unavailability of, or break in access to, the data for whatever reason. 9. You understand and acknowledge that the data is protected by copyright and other intellectual property rights, and that duplication, except as reasonably required to carry out your research with the data, or sale of all or part of the data on any media is not permitted. 10. You recognise that nothing in this agreement shall operate to transfer to the User Institution any intellectual property rights relating to the data. The User Institution has the right to develop intellectual property based on comparisons with their own data. 11. You accept that this agreement will terminate immediately upon any breach of this agreement by you and you will be required to destroy any data held. 12. You accept that it may be necessary for the Data Access Committee or its appointed agent to alter the terms of this agreement from time to time in order to address new concerns. In this event, the Data Access Committee or its appointed agent will contact you to inform you of any changes and you agree that your continued use of the data shall be dependent on the parties entering into a new version of the Agreement. 13. You agree that you will submit a report to the Data Access Committee, if requested, on completion of the agreed purpose. The Data Access Committee agrees to treat the report and all information, data, results, and conclusions contained within such report as confidential information belonging to the User Institution. 14. You accept that the data is protected by and subject to international laws, including but not limited to the Swiss Human Research Act, and that you are responsible for ensuring compliance with any such applicable law. The Data Access Committee reserves the right to request and inspect data security and management documentation to ensure the adequacy of data protection measures in countries that have no national laws comparable to that which pertain in the EAA. 15. This agreement shall be construed, interpreted and governed by the laws of Switzerland and shall be subject to the non-exclusive jurisdiction of Swiss courts. Users should note that the Data Access Committee bears no responsibility for the further analysis or interpretation of the published data.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
RNASeq

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00004963169 bam 323.8 MB
EGAF00004963170 bam 838.9 MB
EGAF00004963171 bam 1.1 GB
EGAF00004963172 bam 5.0 GB
EGAF00004963173 bam 19.9 GB
EGAF00004963174 bam 126.8 MB
EGAF00004963175 bam 253.0 MB
EGAF00004963176 bam 444.7 MB
EGAF00004963177 bam 20.5 GB
EGAF00004963178 bam 899.4 MB
EGAF00004963179 bam 1.5 GB
EGAF00004963180 bam 1.2 GB
EGAF00004963181 bam 10.2 GB
EGAF00004963182 bam 7.5 GB
EGAF00004963183 bam 636.0 MB
EGAF00004963184 bam 366.2 MB
EGAF00004963185 bam 7.0 GB
EGAF00004963186 bam 9.7 GB
EGAF00004963187 bam 8.6 GB
EGAF00004963188 bam 256.8 MB
EGAF00004963189 bam 1.7 GB
EGAF00004963190 bam 100.2 MB
EGAF00004963191 bam 797.4 MB
EGAF00004963192 bam 563.1 MB
EGAF00004963193 bam 7.0 GB
EGAF00004963194 bam 67.1 MB
EGAF00004963195 bam 16.1 GB
EGAF00004963196 bam 14.8 GB
EGAF00004963197 bam 691.6 MB
EGAF00004963198 bam 5.7 GB
EGAF00004963199 bam 183.5 MB
EGAF00004963200 bam 20.9 GB
EGAF00004963201 bam 1.2 GB
EGAF00004963202 bam 188.4 MB
EGAF00004963203 bam 49.3 MB
EGAF00004963204 bam 1.1 GB
EGAF00004963205 bam 313.3 MB
EGAF00004963206 bam 46.8 MB
EGAF00004963207 bam 1.2 GB
EGAF00004963208 bam 7.5 GB
EGAF00004963209 bam 8.7 GB
EGAF00004963210 bam 14.7 GB
EGAF00004963211 bam 12.0 GB
EGAF00004963212 bam 6.6 GB
EGAF00004963213 bam 43.6 MB
EGAF00004963214 bam 128.8 MB
EGAF00004963215 bam 1.1 GB
EGAF00004963216 bam 928.0 MB
EGAF00004963217 bam 735.0 MB
EGAF00004963218 bam 857.2 MB
EGAF00004963219 bam 1.4 GB
EGAF00004963220 bam 7.8 GB
EGAF00004963221 bam 624.3 MB
EGAF00004963222 bam 319.1 MB
EGAF00004963223 bam 1.1 GB
EGAF00004963224 bam 521.2 MB
EGAF00004963225 bam 1.2 GB
EGAF00004963226 bam 11.0 GB
EGAF00004963227 bam 844.4 MB
EGAF00004963228 bam 16.6 GB
EGAF00004963229 bam 8.6 GB
EGAF00004963230 bam 16.3 GB
EGAF00004963231 bam 655.8 MB
EGAF00004963232 bam 590.2 MB
EGAF00004963233 bam 630.4 MB
EGAF00004963234 bam 11.5 GB
EGAF00004963235 bam 703.0 MB
EGAF00004963236 bam 173.9 MB
EGAF00004963237 bam 17.7 GB
EGAF00004963238 bam 8.9 GB
EGAF00004963239 bam 3.1 GB
EGAF00004963240 bam 309.4 MB
EGAF00004963241 bam 275.5 MB
EGAF00004963242 bam 109.5 MB
EGAF00004963243 bam 20.2 GB
EGAF00004963244 bam 966.0 MB
EGAF00004963245 bam 1.0 GB
EGAF00004963246 bam 175.1 MB
EGAF00004963247 bam 13.5 GB
EGAF00004963248 bam 100.3 MB
EGAF00004963249 bam 1.5 GB
EGAF00004963250 bam 7.8 GB
EGAF00004963251 bam 1.5 GB
EGAF00004963252 bam 6.7 GB
EGAF00004963253 bam 32.1 MB
EGAF00004963254 bam 723.6 MB
EGAF00004963255 bam 411.3 MB
EGAF00004963256 bam 39.6 MB
EGAF00004963257 bam 2.0 GB
EGAF00004963258 bam 608.5 MB
EGAF00004963259 bam 19.5 GB
EGAF00004963260 bam 1.5 GB
EGAF00004963261 bam 411.9 kB
EGAF00004963262 bam 9.1 GB
EGAF00004963263 bam 19.7 GB
EGAF00004963264 bam 24.1 GB
EGAF00004963265 bam 105.9 MB
EGAF00004963266 bam 1.1 GB
EGAF00004963267 bam 507.4 MB
EGAF00004963268 bam 295.3 MB
EGAF00004963269 tsv.gz 18.0 kB
EGAF00004963270 tsv.gz 304.9 kB
EGAF00004963271 mtx.gz 11.6 MB
EGAF00004963272 csv 408.1 kB
EGAF00004963273 csv 246.7 kB
EGAF00004963274 csv 144.8 kB
EGAF00004963275 csv 10.5 kB
EGAF00004963276 tsv.gz 17.1 kB
EGAF00004963277 tsv.gz 304.9 kB
EGAF00004963278 mtx.gz 14.5 MB
EGAF00004963279 csv 1.4 MB
EGAF00004963280 tsv.gz 16.8 kB
EGAF00004963281 tsv.gz 304.9 kB
EGAF00004963282 mtx.gz 15.7 MB
EGAF00004963283 tsv.gz 25.5 kB
EGAF00004963284 tsv.gz 304.9 kB
EGAF00004963285 mtx.gz 20.4 MB
EGAF00004963286 tsv.gz 9.9 kB
EGAF00004963287 tsv.gz 304.9 kB
EGAF00004963288 mtx.gz 10.8 MB
EGAF00004963289 csv 75.7 kB
EGAF00004963290 tsv.gz 25.9 kB
EGAF00004963291 tsv.gz 304.9 kB
EGAF00004963292 mtx.gz 16.0 MB
EGAF00004963293 tsv.gz 3.9 kB
EGAF00004963294 tsv.gz 304.9 kB
EGAF00004963295 mtx.gz 2.6 MB
EGAF00004963296 tsv.gz 17.5 kB
EGAF00004963297 tsv.gz 304.9 kB
EGAF00004963298 mtx.gz 14.5 MB
EGAF00004963299 csv 192 Bytes
EGAF00004963300 tsv.gz 7.4 kB
EGAF00004963301 tsv.gz 304.9 kB
EGAF00004963302 mtx.gz 5.5 MB
EGAF00004963303 csv 2.3 MB
EGAF00004963304 csv 1.7 MB
EGAF00004963305 csv 116.9 kB
EGAF00004963306 tsv.gz 27.3 kB
EGAF00004963307 tsv.gz 304.9 kB
EGAF00004963308 mtx.gz 25.4 MB
EGAF00004963309 csv 93.7 kB
EGAF00004963310 tsv.gz 11.1 kB
EGAF00004963311 tsv.gz 304.9 kB
EGAF00004963312 mtx.gz 9.3 MB
EGAF00004963313 tsv.gz 11.7 kB
EGAF00004963314 tsv.gz 304.9 kB
EGAF00004963315 mtx.gz 10.2 MB
EGAF00004963316 csv 458.9 kB
EGAF00004963317 csv 34.1 kB
EGAF00004963318 tsv.gz 5.2 kB
EGAF00004963319 tsv.gz 304.9 kB
EGAF00004963320 mtx.gz 4.2 MB
EGAF00004963321 csv 691.9 kB
EGAF00004963322 csv 448.3 kB
EGAF00004963323 csv 59.3 kB
EGAF00004963324 csv 86.9 kB
EGAF00004963325 csv 135.4 kB
EGAF00004963326 csv 1.0 MB
EGAF00004963327 csv 1.6 MB
EGAF00004963328 csv 255.7 kB
EGAF00004963329 csv 596.2 kB
EGAF00004963330 tsv.gz 38.6 kB
EGAF00004963331 tsv.gz 304.9 kB
EGAF00004963332 mtx.gz 30.0 MB
EGAF00004963333 tsv.gz 19.1 kB
EGAF00004963334 tsv.gz 304.9 kB
EGAF00004963335 mtx.gz 20.0 MB
EGAF00004963336 tsv.gz 12.0 kB
EGAF00004963337 tsv.gz 304.9 kB
EGAF00004963338 mtx.gz 10.2 MB
EGAF00004963339 csv 245.7 kB
EGAF00004963340 csv 225.3 kB
EGAF00004963341 csv 99.2 kB
EGAF00004963342 csv 634.8 kB
EGAF00004963343 csv 807.7 kB
EGAF00004963344 tsv.gz 15.2 kB
EGAF00004963345 tsv.gz 304.9 kB
EGAF00004963346 mtx.gz 12.6 MB
EGAF00004963347 csv 852.3 kB
EGAF00004963348 csv 862.3 kB
EGAF00004963349 csv 124.4 kB
EGAF00004963350 csv 1.4 MB
EGAF00004963351 tsv.gz 6.1 kB
EGAF00004963352 tsv.gz 304.9 kB
EGAF00004963353 mtx.gz 5.7 MB
EGAF00004963354 csv 54.5 kB
EGAF00004963355 tsv.gz 22.3 kB
EGAF00004963356 tsv.gz 304.9 kB
EGAF00004963357 mtx.gz 20.4 MB
EGAF00004963358 csv 304.0 kB
EGAF00004963359 csv 1.0 MB
EGAF00004963360 csv 464.4 kB
EGAF00004963361 tsv.gz 1.6 kB
EGAF00004963362 tsv.gz 304.9 kB
EGAF00004963363 mtx.gz 651.1 kB
EGAF00004963364 tsv.gz 15.8 kB
EGAF00004963365 tsv.gz 304.9 kB
EGAF00004963366 mtx.gz 16.2 MB
EGAF00004963367 csv 606.6 kB
EGAF00004963368 csv 585.8 kB
EGAF00004963369 csv 137.2 kB
EGAF00004963370 csv 1.1 MB
EGAF00004963371 csv 330.8 kB
EGAF00004963372 csv 1.3 MB
EGAF00004963373 tsv.gz 17.4 kB
EGAF00004963374 tsv.gz 304.9 kB
EGAF00004963375 mtx.gz 15.2 MB
EGAF00004963376 csv 859.2 kB
EGAF00004963377 csv 76.6 kB
EGAF00004963378 csv 63.1 kB
EGAF00004963379 csv 449.8 kB
EGAF00004963380 csv 333.7 kB
EGAF00004963381 csv 47.6 kB
EGAF00004963382 csv 920.3 kB
EGAF00004963383 tsv.gz 14.1 kB
EGAF00004963384 tsv.gz 304.9 kB
EGAF00004963385 mtx.gz 12.5 MB
EGAF00004963386 tsv.gz 18.0 kB
EGAF00004963387 tsv.gz 304.9 kB
EGAF00004963388 mtx.gz 12.9 MB
EGAF00004963389 tsv.gz 10.6 kB
EGAF00004963390 tsv.gz 304.9 kB
EGAF00004963391 mtx.gz 8.2 MB
EGAF00004963392 csv 445.8 kB
EGAF00004963393 csv 528.3 kB
EGAF00004963394 csv 316.6 kB
EGAF00004963395 csv 1.1 MB
EGAF00004963396 csv 305.7 kB
EGAF00004963397 csv 144.4 kB
EGAF00004963398 csv 550.5 kB
EGAF00004963399 tsv.gz 14.9 kB
EGAF00004963400 tsv.gz 304.9 kB
EGAF00004963401 mtx.gz 10.6 MB
EGAF00004963402 csv 2.1 MB
EGAF00004963403 tsv.gz 27.6 kB
EGAF00004963404 tsv.gz 304.9 kB
EGAF00004963405 mtx.gz 23.8 MB
EGAF00004963406 tsv.gz 18.2 kB
EGAF00004963407 tsv.gz 304.9 kB
EGAF00004963408 mtx.gz 17.1 MB
EGAF00004963409 csv 450.0 kB
EGAF00004963410 csv 484.5 kB
EGAF00004963411 tsv.gz 7.1 kB
EGAF00004963412 tsv.gz 304.9 kB
EGAF00004963413 mtx.gz 4.7 MB
EGAF00004963414 csv 48.5 kB
EGAF00004963415 csv 114.9 kB
EGAF00004963416 csv 1.0 MB
EGAF00004963417 tsv.gz 10.9 kB
EGAF00004963418 tsv.gz 304.9 kB
EGAF00004963419 mtx.gz 8.5 MB
EGAF00004963420 tsv.gz 17.8 kB
EGAF00004963421 tsv.gz 304.9 kB
EGAF00004963422 mtx.gz 15.6 MB
EGAF00004963423 csv 982.5 kB
EGAF00004963424 csv 878.9 kB
EGAF00004963425 csv 1.1 MB
EGAF00004963426 tsv.gz 24.4 kB
EGAF00004963427 tsv.gz 304.9 kB
EGAF00004963428 mtx.gz 30.3 MB
EGAF00004963429 csv 423.7 kB
EGAF00004963430 tsv.gz 15.9 kB
EGAF00004963431 tsv.gz 304.9 kB
EGAF00004963432 mtx.gz 9.2 MB
EGAF00004963433 csv 550.5 kB
EGAF00004963434 tsv.gz 22.6 kB
EGAF00004963435 tsv.gz 304.9 kB
EGAF00004963436 mtx.gz 26.9 MB
268 Files (467.2 GB)