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FFPE cohort with RNA-seq data of tumor samples

This dataset contains RNA-seq raw data in fastq format from 14 tumor samples. The samples are from primary tumors or metastasis and represent various cancer entities. The samples are formalin-fixed paraffin-embedded (FFPE) treated. For target enrichment SureSelect XT Human All Exon V6 was used. The libraries were sequenced in paired-end mode (2 x 50 nt) on a NovaSeq6000 S2 flow cell.

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This Data Access Agreement (“Agreement”) between TRON gGmbH (“TRON”), Freiligrathstrasse 12, 55131 Mainz, and User Institution (as defined below) governs access to the managed access Data (details of which are set out in Annex I), to which the User Institution has requested access.

In signing this agreement, the User and User Institution agree to be bound by the following terms and conditions.: 1. The User and User Institution agree to use the data only for Scientific Research Purposes towards the advancement of medical science and not for any commercialization purposes. 2. The User and User Institution agree to only use these Data for the purpose of the Project (described in Annex II). The User Institution further agrees that it will only use these Data for Scientific Research Purposes which are within the limitations (if any) set out in Annex I. 3. The User and User Institution agree to preserve, at all times, the confidentiality of these Data. In particular, it undertakes not to use, or attempt to use these Data to compromise or otherwise infringe the confidentiality of information on Research Participants. Without prejudice to the generality of the foregoing, the User Institution agrees to use at least the measures set out in Annex I to protect these Data. 4. The User and User Institution agree to protect the confidentiality of Research Participants in any research papers or publications that they prepare by taking all reasonable care to limit the possibility of identification. The User and User Institution shall be free to publish the results of the research using the Data for the Project. Furthermore, the User and User Institution agree to acknowledge in any such publication that the research makes use of the Data generated by TRON gGmbH. 5. The User and User Institution accept that the Data are subject to national and international laws, including but not limited to the German Data Protection Law and the European General Data Protection Regulation (GDPR), and that the User and User Institution are responsible for ensuring compliance with the same. Therefore the User and User Institution agree to use the Data in accordance with all such applicable laws, and agree not to link or combine these Data to other information or archived data available in a way that could re-identify the Research Participants, even if access to that data has been formally granted to the User Institution or is freely available without restriction. 6. The User and User Institution agree only to transfer or disclose these Data, in whole or part, or any material derived from these Data, to the Authorized Personnel. Should the User Institution wish to share these Data with an External Collaborator, the External Collaborator must complete a separate application for access to these Data. 7. The User and User Institution understand and acknowledge that the Data are protected by copyright and other intellectual property rights, and that duplication, except as reasonably required to carry out the Project with the Data, or sale of all or part of the Data on any media is not permitted. 8. The User and the User Institution recognize that nothing in this Agreement shall operate to transfer to the User Institution any intellectual property rights relating to the Data. Thus, the User and User Institution agree not to make intellectual property claims on the Data and not to use intellectual property protection in ways that would prevent or block access to, or use of, any element of these Data, or conclusion drawn directly from these Data. 9. The User and User Institution have the right to develop intellectual property based on the comparison with their own Data and any downstream discoveries. In this case, the User Institution agrees to implement licensing policies that will not obstruct further research and to follow the D.S. National Institutes of Health's, Best Practices for the Licensing of Genomic Inventions or a similar guideline that conforms with the OECD, Guidelines for the Licensing of the Genetic Inventions. 10. The User Institution agrees that the Data Producers, and all other parties involved in the creation, funding or protection of these Data: a) make no warranty or representation, express or implied as to the accuracy, quality or comprehensiveness of these Data; b) exclude to the fullest extent permitted by law all liability for actions, claims, proceedings, demands, losses (including but not limited to loss of profit), costs, awards damages and payments made by the Recipient that may arise (whether directly or indirectly) in any way whatsoever from the Recipient’s use of these Data or from the unavailability of, or break in access to, these Data for whatever reason and; c) bear no responsibility for the further analysis or interpretation of these Data. 11. The User and User Institution agree not to make intellectual property claims on these Data and not to use intellectual property protection in ways that would prevent or block access to, or use of, any element of these Data, or conclusion drawn directly from these Data. 12. The User and User Institution agree to destroy/discard the Data held, once it is no longer used for the Project, unless obliged to retain the data for archival purposes in conformity with audit or legal requirements. 13. The User and User Institution will notify TRON gGmbH immediately of any changes or departures of Authorized Personnel. 14. The User and User Institution will notify TRON gGmbH prior to any significant changes to the protocol for the Project. 15. The User and User Institution will notify TRON gGmbH as soon as it becomes aware of a breach of the terms or conditions of this agreement. 16. TRON gGmbH may terminate this agreement for any reason by written notice to the User Institution. If this agreement terminates, the User Institution will be required to destroy any Data held, including copies and backup copies. This clause does not prevent the User Institution from retaining these data for archival purpose in conformity with audit or legal requirements. 17. The User and User Institution accept that it may be necessary for the Data Producers to alter the terms of this agreement from time to time. As an example, this may include specific provisions relating to the Data required by Data Producers other than TRON gGmbH. In the event that changes are required, the Data Producers or their appointed agent will contact the User and User Institution to inform it of the changes and the User Institution may elect to accept the changes or terminate the agreement. 18. If requested, the User and User Institution will allow data security and management documentation to be inspected to verify that it is complying with the terms of this agreement. 19. The User and User Institution agrees to distribute a copy of these terms to the Authorized Personnel. The User Institution will procure that the Authorized Personnel comply with the terms of this agreement. 20. This Agreement (and any dispute, controversy, proceedings or claim of whatever nature arising out of this Agreement or its formation) shall be construed, interpreted and governed by the laws of Germany and shall be subject to the exclusive jurisdiction of the German courts. 21. This Agreement shall be effective as of the date of the last party to sign below ("Effective Date") and shall terminate three years after the Effective Date, unless terminated sooner. Upon termination, the User and User Institution will be required to destroy any Data held in accordance with clause 12 above.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00004945952 fastq.gz 4.0 GB
EGAF00004945953 fastq.gz 4.1 GB
EGAF00004945954 fastq.gz 4.6 GB
EGAF00004945955 fastq.gz 4.7 GB
EGAF00004945956 fastq.gz 4.0 GB
EGAF00004945957 fastq.gz 4.1 GB
EGAF00004945958 fastq.gz 4.3 GB
EGAF00004945959 fastq.gz 4.4 GB
EGAF00004945960 fastq.gz 3.8 GB
EGAF00004945961 fastq.gz 4.0 GB
EGAF00004945962 fastq.gz 4.9 GB
EGAF00004945963 fastq.gz 5.0 GB
EGAF00004945964 fastq.gz 5.1 GB
EGAF00004945965 fastq.gz 5.2 GB
EGAF00004945966 fastq.gz 6.0 GB
EGAF00004945967 fastq.gz 6.1 GB
EGAF00004945968 fastq.gz 3.9 GB
EGAF00004945969 fastq.gz 3.9 GB
EGAF00004945970 fastq.gz 4.1 GB
EGAF00004945971 fastq.gz 4.2 GB
EGAF00004945972 fastq.gz 5.9 GB
EGAF00004945973 fastq.gz 6.0 GB
EGAF00004945974 fastq.gz 5.2 GB
EGAF00004945975 fastq.gz 5.4 GB
EGAF00004945976 fastq.gz 5.6 GB
EGAF00004945977 fastq.gz 5.8 GB
EGAF00004945978 fastq.gz 5.7 GB
EGAF00004945979 fastq.gz 5.8 GB
EGAF00004945980 fastq.gz 5.4 GB
EGAF00004945981 fastq.gz 5.5 GB
EGAF00004945982 fastq.gz 5.8 GB
EGAF00004945983 fastq.gz 5.9 GB
EGAF00004945984 fastq.gz 6.1 GB
EGAF00004945985 fastq.gz 6.4 GB
EGAF00004945986 fastq.gz 3.6 GB
EGAF00004945987 fastq.gz 3.7 GB
EGAF00004945988 fastq.gz 6.5 GB
EGAF00004945989 fastq.gz 6.7 GB
EGAF00004945990 fastq.gz 5.7 GB
EGAF00004945991 fastq.gz 5.8 GB
EGAF00004945992 fastq.gz 6.4 GB
EGAF00004945993 fastq.gz 6.5 GB
EGAF00004945994 fastq.gz 5.8 GB
EGAF00004945995 fastq.gz 5.9 GB
EGAF00004945996 fastq.gz 4.9 GB
EGAF00004945997 fastq.gz 5.1 GB
EGAF00004945998 fastq.gz 4.2 GB
EGAF00004945999 fastq.gz 4.3 GB
EGAF00004946000 fastq.gz 5.4 GB
EGAF00004946001 fastq.gz 5.5 GB
EGAF00004946002 fastq.gz 5.3 GB
EGAF00004946003 fastq.gz 5.3 GB
EGAF00004946004 fastq.gz 4.3 GB
EGAF00004946005 fastq.gz 4.3 GB
EGAF00004946006 fastq.gz 4.8 GB
EGAF00004946007 fastq.gz 4.8 GB
56 Files (285.4 GB)