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High-throughput sequencing data for study of molecular drivers of resistance to castration in localised prostate cancer

Aligned whole-genome sequencing and RNA-seq of localised prostate cancer for study 'Loss of SNAI2 in prostate cancer correlates with clinical response to androgen deprivation therapy'.

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Data Access Agreement for study of molecular drivers of resistance to castration in localised prostate cancer

DATA ACCESS AGREEMENT These terms and conditions govern access to the managed access datasets (details of which are set out in Appendix I) to which the User Institution has requested access. The User Institution agrees to be bound by these terms and conditions. Definitions Authorised Personnel: The individuals at the User Institution to whom The Data Access Committee grants access to the Data. This includes the User, the individuals listed in Appendix II and any other individuals for whom the User Institution subsequently requests access to the Data. Details of the initial Authorised Personnel are set out in Appendix II. Data: The managed access datasets to which the User Institution has requested access. Data Producers: The Data Access Committee and the collaborators listed in Appendix I responsible for the development, organisation, and oversight of these Data. External Collaborator: A collaborator of the User, working for an institution other than the User Institution. Project: The project for which the User Institution has requested access to these Data. A description of the Project is set out in Appendix II. Publications: Includes, without limitation, articles published in print journals, electronic journals, reviews, books, posters and other written and verbal presentations of research. Research Participant: An individual whose data form part of these Data. Research Purposes: Shall mean research that is seeking to advance the understanding of genetics and genomics, including the treatment of disorders, and work on statistical methods that may be applied to such research. User: The principal investigator for the Project. User Institution(s): The Institution that has requested access to the Data. The Data Access Committee: Your Institution details here The University of Melbourne, Australia 1. The User Institution agrees to only use these Data for the purpose of the Project (described in Appendix II) and only for Research Purposes. The User Institution further agrees that it will only use these Data for Research Purposes which are within the limitations (if any) set out in Appendix I. 2. The User Institution agrees to preserve, at all times, the confidentiality of these Data. In particular, it undertakes not to use, or attempt to use these Data to compromise or otherwise infringe the confidentiality of information on Research Participants. Without prejudice to the generality of the foregoing, the User Institution agrees to use at least the measures set out in Appendix I to protect these Data. 3. The User Institution agrees to protect the confidentiality of Research Participants in any research papers or publications that they prepare by taking all reasonable care to limit the possibility of identification. 4. The User Institution agrees not to link or combine these Data to other information or archived data available in a way that could re-identify the Research Participants, even if access to that data has been formally granted to the User Institution or is freely available without restriction. 5. The User Institution agrees only to transfer or disclose these Data, in whole or part, or any material derived from these Data, to the Authorised Personnel. Should the User Institution wish to share these Data with an External Collaborator, the External Collaborator must complete a separate application for access to these Data. 6. The User Institution agrees that the Data Producers, and all other parties involved in the creation, funding or protection of these Data: a) make no warranty or representation, express or implied as to the accuracy, quality or comprehensiveness of these Data; b) exclude to the fullest extent permitted by law all liability for actions, claims, proceedings, demands, losses (including but not limited to loss of profit), costs, awards damages and payments made by the Recipient that may arise (whether directly or indirectly) in any way whatsoever from the Recipient’s use of these Data or from the unavailability of, or break in access to, these Data for whatever reason and; c) bear no responsibility for the further analysis or interpretation of these Data. 7. The User Institution agrees to follow the Fort Lauderdale Guidelines (http://www.wellcome.ac.uk/stellent/groups/corporatesite/@policy_communications/documents/web_document/wtd003207.pdf ) and the Toronto Statement (http://www.nature.com/nature/journal/v461/n7261/full/461168a.html). This includes but is not limited to recognising the contribution of the Data Producers and including a proper acknowledgement in all reports or publications resulting from the use of these Data. 8. The User Institution agrees to follow the Publication Policy in Appendix III. This includes respecting the moratorium period for the Data Producers to publish the first peer-reviewed report describing and analysing these Data. 9. The User Institution agrees not to make intellectual property claims on these Data and not to use intellectual property protection in ways that would prevent or block access to, or use of, any element of these Data, or conclusion drawn directly from these Data. 10. The User Institution can elect to perform further research that would add intellectual and resource capital to these data and decide to obtain intellectual property rights on these downstream discoveries. In this case, the User Institution agrees to implement licensing policies that will not obstruct further research and to follow the U.S. National Institutes of Health Best Practices for the Licensing of Genomic Inventions (2005) (https://www.icgc.org/files/daco/NIH_BestPracticesLicensingGenomicInventions_2005_en.pdf ) in conformity with the Organisation for Economic Co-operation and Development Guidelines for the Licensing of the Genetic Inventions (2006) (http://www.oecd.org/science/biotech/36198812.pdf ). 11. The User Institution agrees to destroy/discard the Data held, once it is no longer used for the Project, unless obliged to retain the data for archival purposes in conformity with audit or legal requirements. 12. The User Institution will notify The Data Access Committee within 30 days of any changes or departures of Authorised Personnel. 13. The User Institution will notify The Data Access Committee prior to any significant changes to the protocol for the Project. 14. The User Institution will notify The Data Access Committee as soon as it becomes aware of a breach of the terms or conditions of this agreement. 15. The Data Access Committee may terminate this agreement by written notice to the User Institution. If this agreement terminates for any reason, the User Institution will be required to destroy any Data held, including copies and backup copies. This clause does not prevent the User Institution from retaining these data for archival purpose in conformity with audit or legal requirements. 16. The User Institution accepts that it may be necessary for the Data Producers to alter the terms of this agreement from time to time. As an example, this may include specific provisions relating to the Data required by Data Producers other than The Data Access Committee. In the event that changes are required, the Data Producers or their appointed agent will contact the User Institution to inform it of the changes and the User Institution may elect to accept the changes or terminate the agreement. 17. If requested, the User Institution will allow data security and management documentation to be inspected to verify that it is complying with the terms of this agreement. 18. The User Institution agrees to distribute a copy of these terms to the Authorised Personnel. The User Institution will procure that the Authorised Personnel comply with the terms of this agreement. 19. This agreement (and any dispute, controversy, proceedings or claim of whatever nature arising out of this agreement or its formation) shall be construed, interpreted and governed by the laws of Australia and shall be subject to the exclusive jurisdiction of the Australian courts. APPENDIX I – DATASET DETAILS APPENDIX II ––PROJECT DETAILS APPENDIX III –– PUBLICATION POLICY APPENDIX I – DATASET DETAILS (to be completed by the data producer before passing to applicant) Dataset reference (EGA Study ID and Dataset Details) EGAS00001003172 Name of project that created the dataset Investigation of molecular drivers of resistance to castration in localised prostate cancer Names of other data producers/collaborators N/A Specific limitations on areas of research No limitations Minimum protection measures required File access: Data can be held in unencrypted files on an institutional compute system, with Unix user group read/write access for one or more appropriate groups but not Unix world read/write access behind a secure firewall. Laptops holding these data should have password protected logins and screenlocks (set to lock after 5 min of inactivity). If held on USB keys or other portable hard drives, the data must be encrypted. APPENDIX II – PROJECT DETAILS (to be completed by the Requestor) Details of dataset requested i.e., EGA Study and Dataset Accession Number Brief abstract of the Project in which the Data will be used (500 words max) All Individuals who the User Institution to be named as registered users Name of Registered User Email Job Title Supervisor* All Individuals that should have an account created at the EGA Name of Registered User Email Job Title APPENDIX III – PUBLICATION POLICY The Data Access Committee intend to publish the results of their analysis of this dataset and do not consider its deposition into public databases to be the equivalent of such publications. The Data Access Committee anticipate that the dataset could be useful to other qualified researchers for a variety of purposes. However, some areas of work are subject to a publication moratorium. The publication moratorium covers any publications (including oral communications) that describe the use of the dataset. For research papers, submission for publication should not occur until XX months after these data were first made available on the relevant hosting database, unless XXXXX has provided written consent to earlier submission. In any publications based on these data, please describe how the data can be accessed, including the name of the hosting database (e.g., The European Genome-phenome Archive at the European Bioinformatics Institute) and its accession numbers (e.g., EGAS00000000029), and acknowledge its use in a form agreed by the User Institution with The Data Access Committee.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00002066421 bam 148.8 GB
EGAF00002066422 bam 140.6 GB
EGAF00002066423 bam 86.0 GB
EGAF00002066424 bam 135.1 GB
EGAF00002066425 bam 154.2 GB
EGAF00002066426 bam 84.1 GB
EGAF00002066427 bam 137.4 GB
EGAF00002066428 bam 147.2 GB
EGAF00002066429 bam 73.3 GB
EGAF00002066430 bam 160.3 GB
EGAF00002066431 bam 151.4 GB
EGAF00002066432 bam 74.9 GB
EGAF00002066433 bam 153.2 GB
EGAF00002066434 bam 134.8 GB
EGAF00002066435 bam 83.3 GB
EGAF00002066436 bam 158.9 GB
EGAF00002066437 bam 91.0 GB
EGAF00002066438 bam 145.8 GB
EGAF00002066439 bam 70.1 GB
EGAF00002066440 bam 152.4 GB
EGAF00002066441 bam 146.1 GB
EGAF00002066442 bam 134.7 GB
EGAF00002066443 bam 82.3 GB
EGAF00002066444 bam 149.3 GB
EGAF00002066445 bam 99.8 GB
EGAF00002066446 bam 140.4 GB
EGAF00002066447 bam 154.8 GB
EGAF00002066448 bam 147.2 GB
EGAF00002066449 bam 82.4 GB
EGAF00002066450 bam 144.7 GB
EGAF00002066451 bam 156.8 GB
EGAF00002066452 bam 98.6 GB
EGAF00002066453 bam 153.1 GB
EGAF00002066454 bam 136.9 GB
EGAF00002066455 bam 125.5 GB
EGAF00002066456 bam 91.5 GB
EGAF00002066457 bam 154.3 GB
EGAF00002066458 bam 153.9 GB
EGAF00002066459 bam 153.8 GB
EGAF00002066460 bam 83.0 GB
EGAF00002066461 bam 64.0 GB
EGAF00002066462 bam 27.3 GB
EGAF00002066463 bam 55.5 GB
EGAF00002066464 bam 30.0 GB
EGAF00002066465 bam 2.9 GB
EGAF00002066466 bam 5.4 GB
EGAF00002066467 bam 6.6 GB
EGAF00002066468 bam 4.0 GB
EGAF00002066469 bam 5.5 GB
EGAF00002066470 bam 3.7 GB
EGAF00002066471 bam 4.9 GB
EGAF00002066472 bam 3.9 GB
EGAF00002066473 bam 3.2 GB
EGAF00002066474 bam 3.2 GB
EGAF00002066475 bam 4.1 GB
EGAF00002066476 bam 4.3 GB
EGAF00002066477 bam 2.8 GB
EGAF00002066478 bam 842.3 MB
EGAF00002066479 bam 4.9 GB
EGAF00002066480 bam 2.8 GB
EGAF00002066481 bam 7.9 GB
EGAF00002066482 bam 7.2 GB
EGAF00002066483 bam 6.7 GB
EGAF00002066484 bam 7.4 GB
EGAF00002066485 bam 7.5 GB
EGAF00002066486 bam 8.3 GB
EGAF00002066487 bam 8.6 GB
EGAF00002066488 bam 8.3 GB
EGAF00002066489 bam 7.4 GB
EGAF00002066490 bam 8.1 GB
EGAF00002066491 bam 8.2 GB
EGAF00002066492 bam 7.6 GB
EGAF00002066493 bam 8.5 GB
EGAF00002066494 bam 7.5 GB
EGAF00002066495 bam 7.9 GB
EGAF00002066496 bam 9.4 GB
EGAF00002066497 bam 10.0 GB
EGAF00002066498 bam 9.2 GB
EGAF00002066499 bam 5.1 GB
EGAF00002066500 bam 4.7 GB
EGAF00002066501 bam 4.6 GB
EGAF00002066502 bam 3.8 GB
EGAF00002066503 bam 4.4 GB
EGAF00002066504 bam 3.8 GB
EGAF00002066505 bam 18.7 MB
EGAF00002066506 bam 97.7 MB
EGAF00002066507 bam 3.8 GB
EGAF00002066508 bam 4.3 GB
EGAF00002066509 bam 3.3 GB
EGAF00002066510 bam 155.2 MB
EGAF00002066511 bam 4.5 GB
EGAF00002066512 bam 4.1 GB
EGAF00002066513 bam 3.5 GB
EGAF00002066514 bam 533.8 MB
EGAF00002066515 bam 1.3 GB
EGAF00002066516 bam 4.4 GB
EGAF00002066517 bam 5.0 GB
EGAF00002066518 bam 4.3 GB
EGAF00002066519 bam 656.4 MB
EGAF00002066520 bam 2.9 GB
EGAF00002066521 bam 5.2 GB
EGAF00002066522 bam 127.8 MB
EGAF00002066523 bam 3.8 GB
EGAF00002066524 bam 5.2 GB
EGAF00002066525 bam 5.1 GB
EGAF00002066526 bam 4.4 GB
EGAF00002066527 bam 3.4 GB
EGAF00002066528 bam 2.7 GB
EGAF00002066529 bam 5.1 GB
109 Files (5.6 TB)