Long-read data (PacBio)

The goal of this project was to perform long-read RNA sequencing (LR-seq, PacBio) in combination with short-read RNA-seq for systematic characterization of the isoform diversity in primary breast tumor samples. We sequenced the full-length transcriptomes of 26 breast tumors and 4 normal breast samples.

26 samples
DAC: EGAC00001001821
Technologies: PacBio RS II, Sequel

Access Policy1 Study Files

Metadata

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NPUNCU DUO:0000018 (version: 2021-02-23)not for profit, non commercial use onlyThis data use modifier indicates that use of the data is limited to not-for-profit organizations and not-for-profit use, non-commercial use.
PS DUO:0000027 (version: 2021-02-23)project specific restrictionThis data use modifier indicates that use is limited to use within an approved project.

This Data Access Agreement governs the terms on which access will be granted to the data in this submission which are available through the European Genome-phenome Archive (EGA) and provided by The Jackson Laboratory.

Process to obtain datasets generated by The Jackson Laboratory which are available through the European Genome-phenome Archive (EGA): Please submit your full name, supervisor's name if applicable, Institution's name and detailed research aims (internal non-commercial research) with your online request for review by the Data Access Committee (DAC). This dataset is governed by a Data Access Agreement which will be sent to your institutional email for review and signature by your Institution's Legal representative upon approval of your research aims by the DAC. Access will be granted to qualified researchers. Any questions, contact data_access@jax.org.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID	Study Title	Study Type
EGAS00001004819	Long-read and short-read isoform sequencing in breast cancer	Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID	File Type	Size
EGAF00004842550	fastq.gz	250.7 MB
EGAF00004842551	fastq.gz	97.2 MB
EGAF00004842552	fastq.gz	191.7 MB
EGAF00004842553	fastq.gz	368.1 MB
EGAF00004842554	fastq.gz	167.6 MB
EGAF00004842555	fastq.gz	432.3 MB
EGAF00004842556	fastq.gz	71.1 MB
EGAF00004842557	fastq.gz	100.6 MB
EGAF00004842558	fastq.gz	149.7 MB
EGAF00004842559	fastq.gz	337.3 MB
EGAF00004842560	fastq.gz	405.9 MB
EGAF00004842561	fastq.gz	648.5 MB
EGAF00004842562	fastq.gz	413.2 MB
EGAF00004842563	fastq.gz	381.3 MB
EGAF00004842564	fastq.gz	746.8 MB
EGAF00004842565	fastq.gz	560.2 MB
EGAF00004842566	fastq.gz	376.3 MB
EGAF00004842567	fastq.gz	332.4 MB
EGAF00004842568	fastq.gz	751.2 MB
EGAF00004842569	fastq.gz	1.3 GB
EGAF00004842570	fastq.gz	430.8 MB
EGAF00004842571	fastq.gz	1.5 GB
EGAF00004842572	fastq.gz	1.4 GB
EGAF00004842573	fastq.gz	573.1 MB
EGAF00004842574	fastq.gz	2.0 GB
EGAF00004842575	fastq.gz	320.1 MB
EGAF00004842576	fastq.gz	2.0 GB
EGAF00004842577	fastq.gz	254.1 MB
EGAF00004842578	fastq.gz	640.6 MB
EGAF00004842579	fastq.gz	1.5 GB
EGAF00004842580	fastq.gz	1.5 GB
EGAF00004842581	fastq.gz	2.3 GB
EGAF00004842582	fastq.gz	345.2 MB
EGAF00004842583	fastq.gz	1.6 GB
EGAF00004842584	fastq.gz	681.5 MB
EGAF00004842585	fastq.gz	1.8 GB
EGAF00004842586	fastq.gz	77.5 MB
EGAF00004842587	fastq.gz	797.5 MB
EGAF00004842588	fastq.gz	346.1 MB
EGAF00004842589	fastq.gz	861.8 MB
EGAF00004842590	fastq.gz	817.3 MB
EGAF00004842591	fastq.gz	883.9 MB
EGAF00004842592	fastq.gz	876.9 MB
EGAF00004842593	fastq.gz	803.2 MB
EGAF00004842594	fastq.gz	478.3 MB
EGAF00004842595	fastq.gz	832.4 MB
46 Files (33.5 GB)