Short-read (RNA-seq)
The goal of this project was to perform long-read RNA sequencing (LR-seq, PacBio) in combination with short-read RNA-seq for systematic characterization of the isoform diversity in primary breast tumor samples. We sequenced the full-length transcriptomes of 26 breast tumors and 4 normal breast samples.
- 25 samples
- DAC: EGAC00001001821
- Technology: NextSeq 500
- NPUNCU DUO:0000018 (version: 2021-02-23)not for profit, non commercial use onlyThis data use modifier indicates that use of the data is limited to not-for-profit organizations and not-for-profit use, non-commercial use.
- PS DUO:0000027 (version: 2021-02-23)project specific restrictionThis data use modifier indicates that use is limited to use within an approved project.
This Data Access Agreement governs the terms on which access will be granted to the data in this submission which are available through the European Genome-phenome Archive (EGA) and provided by The Jackson Laboratory.
Process to obtain datasets generated by The Jackson Laboratory which are available through the European Genome-phenome Archive (EGA): Please submit your full name, supervisor's name if applicable, Institution's name and detailed research aims (internal non-commercial research) with your online request for review by the Data Access Committee (DAC). This dataset is governed by a Data Access Agreement which will be sent to your institutional email for review and signature by your Institution's Legal representative upon approval of your research aims by the DAC. Access will be granted to qualified researchers. Any questions, contact data_access@jax.org.
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| Other |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Located in | |
|---|---|---|---|---|
| EGAF00004842492 | fastq.gz | 3.7 GB | ||
| EGAF00004842493 | fastq.gz | 3.8 GB | ||
| EGAF00004842494 | fastq.gz | 3.8 GB | ||
| EGAF00004842495 | fastq.gz | 3.9 GB | ||
| EGAF00004842496 | fastq.gz | 4.3 GB | ||
| EGAF00004842497 | fastq.gz | 4.4 GB | ||
| EGAF00004842498 | fastq.gz | 7.6 GB | ||
| EGAF00004842499 | fastq.gz | 7.8 GB | ||
| EGAF00004842500 | fastq.gz | 2.6 GB | ||
| EGAF00004842501 | fastq.gz | 2.7 GB | ||
| EGAF00004842502 | fastq.gz | 2.7 GB | ||
| EGAF00004842503 | fastq.gz | 2.8 GB | ||
| EGAF00004842504 | fastq.gz | 629.2 MB | ||
| EGAF00004842505 | fastq.gz | 631.9 MB | ||
| EGAF00004842506 | fastq.gz | 1.2 GB | ||
| EGAF00004842507 | fastq.gz | 1.2 GB | ||
| EGAF00004842508 | fastq.gz | 1.7 GB | ||
| EGAF00004842509 | fastq.gz | 1.7 GB | ||
| EGAF00004842510 | fastq.gz | 1.1 GB | ||
| EGAF00004842511 | fastq.gz | 1.1 GB | ||
| EGAF00004842512 | fastq.gz | 2.7 GB | ||
| EGAF00004842513 | fastq.gz | 2.8 GB | ||
| EGAF00004842514 | fastq.gz | 2.0 GB | ||
| EGAF00004842515 | fastq.gz | 2.0 GB | ||
| EGAF00004842516 | fastq.gz | 1.4 GB | ||
| EGAF00004842517 | fastq.gz | 1.5 GB | ||
| EGAF00004842518 | fastq.gz | 2.8 GB | ||
| EGAF00004842519 | fastq.gz | 2.8 GB | ||
| EGAF00004842520 | fastq.gz | 1.4 GB | ||
| EGAF00004842521 | fastq.gz | 1.4 GB | ||
| EGAF00004842522 | fastq.gz | 1.4 GB | ||
| EGAF00004842523 | fastq.gz | 1.4 GB | ||
| EGAF00004842524 | fastq.gz | 2.6 GB | ||
| EGAF00004842525 | fastq.gz | 2.6 GB | ||
| EGAF00004842526 | fastq.gz | 2.5 GB | ||
| EGAF00004842527 | fastq.gz | 2.6 GB | ||
| EGAF00004842528 | fastq.gz | 2.4 GB | ||
| EGAF00004842529 | fastq.gz | 2.4 GB | ||
| EGAF00004842530 | fastq.gz | 2.5 GB | ||
| EGAF00004842531 | fastq.gz | 2.6 GB | ||
| EGAF00004842532 | fastq.gz | 2.6 GB | ||
| EGAF00004842533 | fastq.gz | 2.7 GB | ||
| EGAF00004842534 | fastq.gz | 1.4 GB | ||
| EGAF00004842535 | fastq.gz | 1.4 GB | ||
| EGAF00004842536 | fastq.gz | 1.8 GB | ||
| EGAF00004842537 | fastq.gz | 1.8 GB | ||
| EGAF00004842538 | fastq.gz | 3.0 GB | ||
| EGAF00004842539 | fastq.gz | 3.3 GB | ||
| EGAF00004842540 | fastq.gz | 1.8 GB | ||
| EGAF00004842541 | fastq.gz | 1.8 GB | ||
| EGAF00004842542 | fastq.gz | 2.1 GB | ||
| EGAF00004842543 | fastq.gz | 2.2 GB | ||
| EGAF00004842544 | fastq.gz | 1.9 GB | ||
| EGAF00004842545 | fastq.gz | 1.9 GB | ||
| EGAF00004842546 | fastq.gz | 1.7 GB | ||
| EGAF00004842547 | fastq.gz | 1.7 GB | ||
| EGAF00004842548 | fastq.gz | 1.8 GB | ||
| EGAF00004842549 | fastq.gz | 1.8 GB | ||
| 58 Files (140.2 GB) | ||||