FIT interval CRCs versus Screen-detected CRCs
Formalin-fixed, paraffin-embedded samples from 27 FIT interval CRC and 54 screen-detected CRCs collected in a pilot-program of FIT-based CRC screening in the southwest and northwest regions in the Netherlands, were used in this study. DNA was extracted for 1) Shallow Sequencing (copy number analysis) and 2) TSACP Amplicon Cancer Gene Panel (mutations) of 22 FIT Interval CRCs and 45 screen-detected CRCs.
- 66 samples
- DAC: EGAC00001001051
- Technology: Illumina HiSeq 2500
Data Access Policy of NKI-AvL TGO
Data Access Policy of NKI-AvL TGO To request access to this specific dataset, and in order to comply with local and (inter)national regulations, please follow the steps described below: 1. Please fill in the information requested on the website: ega.nki.nl 2. Once you’ve submitted this information, the Data Access Committee (DAC) and the NKI-AVL Internal Review Board (IRB) will review your planned study and its goals and judge whether it is competing with our interests. The DAC and IRB can approve or decline your request or request a modification. 3. Upon approval by the IRB, you will receive a Data Transfer Agreement (DTA) that needs to be filled in and signed by the legal representative of your institute / company. 4. Upon acceptance of a signed DTA by our Knowledge Transfer & Contracting Office (KT&C), your party will receive a copy signed by our legal representative, and you will need to submit your access request via the EGA website
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| EGAS00001004683 | Other |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Located in | |
|---|---|---|---|---|
| EGAF00004679299 | fastq.gz | 396.2 MB | ||
| EGAF00004679300 | fastq.gz | 403.5 MB | ||
| EGAF00004679301 | fastq.gz | 346.3 MB | ||
| EGAF00004679302 | fastq.gz | 409.1 MB | ||
| EGAF00004679303 | fastq.gz | 305.5 MB | ||
| EGAF00004679304 | fastq.gz | 370.4 MB | ||
| EGAF00004679305 | fastq.gz | 419.7 MB | ||
| EGAF00004679306 | fastq.gz | 457.9 MB | ||
| EGAF00004679307 | fastq.gz | 481.8 MB | ||
| EGAF00004679308 | fastq.gz | 384.0 MB | ||
| EGAF00004679309 | fastq.gz | 313.1 MB | ||
| EGAF00004679310 | fastq.gz | 355.6 MB | ||
| EGAF00004679311 | fastq.gz | 351.4 MB | ||
| EGAF00004679312 | fastq.gz | 361.5 MB | ||
| EGAF00004679313 | fastq.gz | 327.1 MB | ||
| EGAF00004679314 | fastq.gz | 403.6 MB | ||
| EGAF00004679315 | fastq.gz | 416.8 MB | ||
| EGAF00004679316 | fastq.gz | 312.4 MB | ||
| EGAF00004679317 | fastq.gz | 355.9 MB | ||
| EGAF00004679318 | fastq.gz | 374.4 MB | ||
| EGAF00004679319 | fastq.gz | 335.9 MB | ||
| EGAF00004679320 | fastq.gz | 227.5 MB | ||
| EGAF00004679321 | fastq.gz | 295.0 MB | ||
| EGAF00004679322 | fastq.gz | 315.5 MB | ||
| EGAF00004679323 | fastq.gz | 326.7 MB | ||
| EGAF00004679324 | fastq.gz | 336.7 MB | ||
| EGAF00004679325 | fastq.gz | 295.0 MB | ||
| EGAF00004679326 | fastq.gz | 309.6 MB | ||
| EGAF00004679327 | fastq.gz | 426.3 MB | ||
| EGAF00004679328 | fastq.gz | 440.7 MB | ||
| EGAF00004679329 | fastq.gz | 407.4 MB | ||
| EGAF00004679330 | fastq.gz | 374.8 MB | ||
| EGAF00004679331 | fastq.gz | 385.4 MB | ||
| EGAF00004679332 | fastq.gz | 392.2 MB | ||
| EGAF00004679333 | fastq.gz | 333.3 MB | ||
| EGAF00004679334 | fastq.gz | 358.1 MB | ||
| EGAF00004679335 | fastq.gz | 273.9 MB | ||
| EGAF00004679336 | fastq.gz | 245.1 MB | ||
| EGAF00004679337 | fastq.gz | 445.0 MB | ||
| EGAF00004679338 | fastq.gz | 326.0 MB | ||
| EGAF00004679339 | fastq.gz | 427.2 MB | ||
| EGAF00004679340 | fastq.gz | 414.1 MB | ||
| EGAF00004679341 | fastq.gz | 447.5 MB | ||
| EGAF00004679342 | fastq.gz | 399.5 MB | ||
| EGAF00004679343 | fastq.gz | 366.8 MB | ||
| EGAF00004679344 | fastq.gz | 228.6 MB | ||
| EGAF00004679345 | fastq.gz | 433.5 MB | ||
| EGAF00004679346 | fastq.gz | 294.8 MB | ||
| EGAF00004679347 | fastq.gz | 451.9 MB | ||
| EGAF00004679348 | fastq.gz | 314.8 MB | ||
| EGAF00004679349 | fastq.gz | 429.4 MB | ||
| EGAF00004679350 | fastq.gz | 285.9 MB | ||
| EGAF00004679351 | fastq.gz | 364.2 MB | ||
| EGAF00004679352 | fastq.gz | 295.9 MB | ||
| EGAF00004679353 | fastq.gz | 254.4 MB | ||
| EGAF00004679354 | fastq.gz | 270.0 MB | ||
| EGAF00004679355 | fastq.gz | 293.7 MB | ||
| EGAF00004679356 | fastq.gz | 365.4 MB | ||
| EGAF00004679357 | fastq.gz | 363.7 MB | ||
| EGAF00004679358 | fastq.gz | 418.0 MB | ||
| EGAF00004679359 | fastq.gz | 113.3 MB | ||
| EGAF00004679360 | fastq.gz | 116.7 MB | ||
| EGAF00004679361 | fastq.gz | 123.6 MB | ||
| EGAF00004679362 | fastq.gz | 126.5 MB | ||
| EGAF00004679363 | fastq.gz | 201.6 MB | ||
| EGAF00004679364 | fastq.gz | 202.1 MB | ||
| EGAF00004679365 | fastq.gz | 218.2 MB | ||
| EGAF00004679366 | fastq.gz | 226.0 MB | ||
| EGAF00004679367 | fastq.gz | 164.4 MB | ||
| EGAF00004679368 | fastq.gz | 168.3 MB | ||
| EGAF00004679369 | fastq.gz | 98.6 MB | ||
| EGAF00004679370 | fastq.gz | 103.2 MB | ||
| EGAF00004679371 | fastq.gz | 169.0 MB | ||
| EGAF00004679372 | fastq.gz | 172.3 MB | ||
| EGAF00004679373 | fastq.gz | 182.3 MB | ||
| EGAF00004679374 | fastq.gz | 188.1 MB | ||
| EGAF00004679375 | fastq.gz | 82.1 MB | ||
| EGAF00004679376 | fastq.gz | 84.4 MB | ||
| EGAF00004679377 | fastq.gz | 232.7 MB | ||
| EGAF00004679378 | fastq.gz | 239.5 MB | ||
| EGAF00004679379 | fastq.gz | 181.2 MB | ||
| EGAF00004679380 | fastq.gz | 186.3 MB | ||
| EGAF00004679381 | fastq.gz | 115.5 MB | ||
| EGAF00004679382 | fastq.gz | 119.4 MB | ||
| EGAF00004679383 | fastq.gz | 154.6 MB | ||
| EGAF00004679384 | fastq.gz | 157.9 MB | ||
| EGAF00004679385 | fastq.gz | 110.2 MB | ||
| EGAF00004679386 | fastq.gz | 112.6 MB | ||
| EGAF00004679387 | fastq.gz | 130.0 MB | ||
| EGAF00004679388 | fastq.gz | 132.4 MB | ||
| EGAF00004679389 | fastq.gz | 241.7 MB | ||
| EGAF00004679390 | fastq.gz | 244.6 MB | ||
| EGAF00004679391 | fastq.gz | 227.9 MB | ||
| EGAF00004679392 | fastq.gz | 234.4 MB | ||
| EGAF00004679393 | fastq.gz | 190.0 MB | ||
| EGAF00004679394 | fastq.gz | 193.7 MB | ||
| EGAF00004679395 | fastq.gz | 54.9 MB | ||
| EGAF00004679396 | fastq.gz | 54.7 MB | ||
| EGAF00004679397 | fastq.gz | 23.3 MB | ||
| EGAF00004679398 | fastq.gz | 23.7 MB | ||
| EGAF00004679399 | fastq.gz | 87.1 MB | ||
| EGAF00004679400 | fastq.gz | 87.4 MB | ||
| EGAF00004679401 | fastq.gz | 144.4 MB | ||
| EGAF00004679402 | fastq.gz | 147.0 MB | ||
| EGAF00004679403 | fastq.gz | 152.9 MB | ||
| EGAF00004679404 | fastq.gz | 153.9 MB | ||
| EGAF00004679405 | fastq.gz | 55.8 MB | ||
| EGAF00004679406 | fastq.gz | 56.5 MB | ||
| EGAF00004679407 | fastq.gz | 147.4 MB | ||
| EGAF00004679408 | fastq.gz | 151.1 MB | ||
| EGAF00004679409 | fastq.gz | 96.7 MB | ||
| EGAF00004679410 | fastq.gz | 98.9 MB | ||
| EGAF00004679411 | fastq.gz | 146.8 MB | ||
| EGAF00004679412 | fastq.gz | 150.3 MB | ||
| EGAF00004679413 | fastq.gz | 118.7 MB | ||
| EGAF00004679414 | fastq.gz | 121.8 MB | ||
| EGAF00004679415 | fastq.gz | 191.3 MB | ||
| EGAF00004679416 | fastq.gz | 197.0 MB | ||
| EGAF00004679417 | fastq.gz | 204.7 MB | ||
| EGAF00004679418 | fastq.gz | 210.8 MB | ||
| EGAF00004679419 | fastq.gz | 108.4 MB | ||
| EGAF00004679420 | fastq.gz | 109.5 MB | ||
| EGAF00004679421 | fastq.gz | 156.1 MB | ||
| EGAF00004679422 | fastq.gz | 158.5 MB | ||
| EGAF00004679423 | fastq.gz | 139.8 MB | ||
| EGAF00004679424 | fastq.gz | 143.0 MB | ||
| EGAF00004679425 | fastq.gz | 124.5 MB | ||
| EGAF00004679426 | fastq.gz | 130.3 MB | ||
| EGAF00004679427 | fastq.gz | 144.4 MB | ||
| EGAF00004679428 | fastq.gz | 150.7 MB | ||
| EGAF00004679429 | fastq.gz | 135.1 MB | ||
| EGAF00004679430 | fastq.gz | 138.9 MB | ||
| EGAF00004679431 | fastq.gz | 183.4 MB | ||
| EGAF00004679432 | fastq.gz | 189.7 MB | ||
| EGAF00004679433 | fastq.gz | 185.8 MB | ||
| EGAF00004679434 | fastq.gz | 190.3 MB | ||
| EGAF00004679435 | fastq.gz | 62.1 MB | ||
| EGAF00004679436 | fastq.gz | 62.8 MB | ||
| EGAF00004679437 | fastq.gz | 184.8 MB | ||
| EGAF00004679438 | fastq.gz | 187.3 MB | ||
| EGAF00004679439 | fastq.gz | 159.9 MB | ||
| EGAF00004679440 | fastq.gz | 163.6 MB | ||
| EGAF00004679441 | fastq.gz | 62.7 MB | ||
| EGAF00004679442 | fastq.gz | 62.7 MB | ||
| EGAF00004679443 | fastq.gz | 145.9 MB | ||
| EGAF00004679444 | fastq.gz | 150.0 MB | ||
| EGAF00004679445 | fastq.gz | 170.3 MB | ||
| EGAF00004679446 | fastq.gz | 175.6 MB | ||
| EGAF00004679447 | fastq.gz | 130.2 MB | ||
| EGAF00004679448 | fastq.gz | 133.4 MB | ||
| EGAF00004679449 | fastq.gz | 114.7 MB | ||
| EGAF00004679450 | fastq.gz | 117.5 MB | ||
| EGAF00004679451 | fastq.gz | 110.3 MB | ||
| EGAF00004679452 | fastq.gz | 111.8 MB | ||
| EGAF00004679453 | fastq.gz | 118.3 MB | ||
| EGAF00004679454 | fastq.gz | 122.9 MB | ||
| EGAF00004679455 | fastq.gz | 71.8 MB | ||
| EGAF00004679456 | fastq.gz | 74.2 MB | ||
| EGAF00004679457 | fastq.gz | 63.9 MB | ||
| EGAF00004679458 | fastq.gz | 65.4 MB | ||
| EGAF00004679459 | fastq.gz | 59.2 MB | ||
| EGAF00004679460 | fastq.gz | 60.1 MB | ||
| EGAF00004679461 | fastq.gz | 159.2 MB | ||
| EGAF00004679462 | fastq.gz | 164.4 MB | ||
| EGAF00004679463 | fastq.gz | 96.4 MB | ||
| EGAF00004679464 | fastq.gz | 97.1 MB | ||
| EGAF00004679465 | fastq.gz | 85.9 MB | ||
| EGAF00004679466 | fastq.gz | 88.8 MB | ||
| EGAF00004679467 | fastq.gz | 70.1 MB | ||
| EGAF00004679468 | fastq.gz | 72.6 MB | ||
| EGAF00004679469 | fastq.gz | 128.4 MB | ||
| EGAF00004679470 | fastq.gz | 132.3 MB | ||
| EGAF00004679471 | fastq.gz | 142.4 MB | ||
| EGAF00004679472 | fastq.gz | 145.7 MB | ||
| EGAF00004679473 | fastq.gz | 218.1 MB | ||
| EGAF00004679474 | fastq.gz | 228.3 MB | ||
| EGAF00004679475 | fastq.gz | 139.2 MB | ||
| EGAF00004679476 | fastq.gz | 143.3 MB | ||
| EGAF00004679477 | fastq.gz | 140.2 MB | ||
| EGAF00004679478 | fastq.gz | 142.7 MB | ||
| EGAF00004679479 | fastq.gz | 93.6 MB | ||
| EGAF00004679480 | fastq.gz | 95.6 MB | ||
| EGAF00004679481 | fastq.gz | 87.8 MB | ||
| EGAF00004679482 | fastq.gz | 89.2 MB | ||
| 184 Files (38.4 GB) | ||||