Characterization of arrested B-lymphoid differentiation and leukemic cell states in ETV6-RUNX1-positive pediatric leukemia
RNA was extracted from eight diagnostic ETV6-RUNX1 positive acute lymphoblastic leukemia samples collected in PAXgene blood RNA tubes using PAXgene Blood RNA kit (cat #762174, Qiagen GmbH, Hilden, Germany), following the version 2 instructions for manual purification. Samples were processed with Globin-Zero Gold rRNA Removal Kit (Illumina) and directional libraries were prepared using NEBNext Ultra Directional RNA Library Prep kit (New England Biolabs). The library preparation and paired end (150 bp) sequencing were performed by Novogene (HK) Company Limited (Hong Kong, China) using Illumina Novaseq 6000 aiming at 70 million read pairs per sample.
- 8 samples
- DAC: EGAC00001001551
- Technology: Illumina NovaSeq 6000
Two PIs (Tampere/Kuopio) and a legal representative of the Tampere University Hospital
Data will be shared if the proposed project falls within the patient/caretaker consent
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| EGAS00001004374 | RNASeq |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Located in | |
|---|---|---|---|---|
| EGAF00004679147 | fq.gz | 7.3 GB | ||
| EGAF00004679148 | fq.gz | 8.1 GB | ||
| EGAF00004679149 | fq.gz | 7.6 GB | ||
| EGAF00004679150 | fq.gz | 8.4 GB | ||
| EGAF00004679151 | fq.gz | 6.5 GB | ||
| EGAF00004679152 | fq.gz | 7.2 GB | ||
| EGAF00004679153 | fq.gz | 6.4 GB | ||
| EGAF00004679154 | fq.gz | 6.9 GB | ||
| EGAF00004679155 | fq.gz | 5.1 GB | ||
| EGAF00004679156 | fq.gz | 5.5 GB | ||
| EGAF00004679157 | fq.gz | 8.4 GB | ||
| EGAF00004679158 | fq.gz | 9.2 GB | ||
| EGAF00004679159 | fq.gz | 7.4 GB | ||
| EGAF00004679160 | fq.gz | 8.1 GB | ||
| EGAF00004679161 | fq.gz | 6.5 GB | ||
| EGAF00004679162 | fq.gz | 7.1 GB | ||
| 16 Files (115.7 GB) | ||||