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AVENIO Expanded ctDNA panel sequence alignments (BAMs) from plasma DNA of BC, CRC and NSCLC patients

The AVENIO ctDNA Expanded Kit is a next-generation sequencing (NGS) liquid biopsy assay with a 77 gene panel (192 kb) containing genes in U.S. National Comprehensive Cancer Network (NCCN) Guidelines and emerging cancer biomarkers. This pan-cancer assay was applied to 48 plasma samples from patients with breast, colorectal and non-small cell lung cancer. After sequencing 150bp paired-end, reads were aligned to the hg38 genome with the AVENIO Oncology Analysis Software (version 2.0). These files are the deduplicated alignments generated by the analysis software used for subsequent variant, indel and CNV calling.

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CTC-Plasma DNA-3 MONDO Ontologies (BC, CRC, NSCLC)

European Genome-Phenome Archive c/o European Bioinformatics Institute Wellcome Trust Genome Campus Hinxton Cambridge CB10 1SD United Kingdom To whom it may concern, This document refers to datasets with MONDO:0007254, MONDO:0005575, MONDO:0005233 which has been submitted to the European Genome Archive (EGA) for the restricted access by legitimate academic institutions that have agreed to comply with the terms of a Data Access Agreement drafted by Ellen Heitzer. There are a number of steps that a researcher must take to obtain access to this data and the process is overseen by Ellen Heitzer Ellen Heitzer is a Postdoctoral Fellow and is authorized to approve researchers to have encrypted access to the data submitted to the EGA. Please be advised that Ellen Heitzer (ellen.heitzer@medunigraz.at) is authorized to upload data to the EGA for archiving and distribution as part of your submission process, which will enable approved researchers to have encrypted access to the data. We can confirm that this submission is consistent with the informed consent of the participants of the study or has been granted ethical approval and is in accordance with the applicable laws and regulations. Sincerely, Michael R. Speicher Principle Investigator

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00004185737 bam 168.1 MB
EGAF00004185738 bam 387.8 MB
EGAF00004185739 bam 426.4 MB
EGAF00004185740 bam 477.0 MB
EGAF00004185741 bam 423.4 MB
EGAF00004185742 bam 272.5 MB
EGAF00004185743 bam 157.0 MB
EGAF00004185744 bam 205.2 MB
EGAF00004185745 bam 337.4 MB
EGAF00004185746 bam 211.9 MB
EGAF00004185747 bam 105.5 MB
EGAF00004185748 bam 463.9 MB
EGAF00004185749 bam 617.3 MB
EGAF00004185750 bam 638.4 MB
EGAF00004185751 bam 466.3 MB
EGAF00004185752 bam 455.1 MB
EGAF00004185753 bam 454.4 MB
EGAF00004185754 bam 220.5 MB
EGAF00004185755 bam 230.6 MB
EGAF00004185756 bam 486.4 MB
EGAF00004185757 bam 426.9 MB
EGAF00004185758 bam 793.2 MB
EGAF00004185759 bam 477.7 MB
EGAF00004185760 bam 657.9 MB
EGAF00004185761 bam 495.5 MB
EGAF00004185762 bam 522.5 MB
EGAF00004185763 bam 418.5 MB
EGAF00004185764 bam 536.5 MB
EGAF00004185765 bam 355.7 MB
EGAF00004185766 bam 389.5 MB
EGAF00004185767 bam 840.5 MB
EGAF00004185768 bam 411.7 MB
EGAF00004185769 bam 560.3 MB
EGAF00004185770 bam 602.8 MB
EGAF00004185771 bam 372.3 MB
EGAF00004185772 bam 362.5 MB
EGAF00004185773 bam 651.5 MB
EGAF00004185774 bam 411.8 MB
EGAF00004185775 bam 414.0 MB
EGAF00004185776 bam 495.0 MB
EGAF00004185777 bam 526.4 MB
EGAF00004185778 bam 687.0 MB
EGAF00004185779 bam 341.2 MB
EGAF00004185780 bam 518.5 MB
EGAF00004185781 bam 833.2 MB
EGAF00004185782 bam 841.5 MB
EGAF00004185783 bam 790.1 MB
EGAF00004185784 bam 756.5 MB
48 Files (22.7 GB)