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Genomic and transcriptomic data of glioma specimens

Dataset consists of 207 glioma samples of WHO grades II, III and IV. Dataset consists 182 tumor derived genomic data of ~700 cancer-related and epigenetic-related genes with matched blood samples for 48 specimens. Dataset also consists transcriptomic data for 105 specimens. In total 335 bam files were deposited.

Request Access

Nencki Institute NGS Core Facility Data Access Committee agrees to share its data under conditions specified in the DATA ACCESS POLICY document.

DATA ACCESS POLICY These terms and conditions govern access to the managed access datasets (details of which are set out in Appendix I) to which the User Institution has requested access. The User Institution agrees to be bound by these terms and conditions. Definitions Authorised Personnel: The individuals at the User Institution to whom Nencki Institute NGS Core Facility Data Access Committee grants access to the Data. This includes the User, the individuals listed in Appendix II and any other individuals for whom the User Institution subsequently requests access to the Data. Details of the initial Authorised Personnel are set out in Appendix II. Data: The managed access datasets to which the User Institution has requested access. Data Producers: Nencki Institute NGS Core Facility Data Access Committee responsible for the development, organisation, and oversight of these Data. External Collaborator: A collaborator of the User, working for an institution other than the User Institution. Project: The project for which the User Institution has requested access to these Data. Publications: Includes, without limitation, articles published in print journals, electronic journals, reviews, books, posters and other written and verbal presentations of research. Research Participant: An individual whose data form part of these Data. Research Purposes: Shall mean research that is seeking to advance the understanding of genetics and genomics, including the treatment of disorders, and work on statistical methods that may be applied to such research. User: The principal investigator for the Project. User Institution(s): The Institution that has requested access to the Data. Nencki Institute NGS Core Facility Data Access Committee: Nencki Institute of Experimental Biology, Polish Academy of Sciences, Pasteur str 3 02-796 Warsaw, Poland 1. The User Institution agrees to only use these Data for the purpose of the Project (described before accessing the data) and only for Research Purposes. The User Institution further agrees that it will only use these Data for Research Purposes which are within the limitations (if any) set out in the project description. 2. The User Institution agrees to preserve, at all times, the confidentiality of these Data. In particular, it undertakes not to use, or attempt to use these Data to compromise or otherwise infringe the confidentiality of information on Research Participants. Without prejudice to the generality of the foregoing, the User Institution agrees to use all measures to protect these Data. 3. The User Institution agrees to protect the confidentiality of Research Participants in any research papers or publications that they prepare by taking all reasonable care to limit the possibility of identification. 4. The User Institution agrees not to link or combine these Data to other information or archived data available in a way that could re-identify the Research Participants, even if access to that data has been formally granted to the User Institution or is freely available without restriction. 5. The User Institution agrees only to transfer or disclose these Data, in whole or part, or any material derived from these Data, to the Authorised Personnel. Should the User Institution wish to share these Data with an External Collaborator, the External Collaborator must complete a separate application for access to these Data. 6. The User Institution agrees that the Data Producers, and all other parties involved in the creation, funding or protection of these Data: a) make no warranty or representation, express or implied as to the accuracy, quality or comprehensiveness of these Data; b) exclude to the fullest extent permitted by law all liability for actions, claims, proceedings, demands, losses (including but not limited to loss of profit), costs, awards damages and payments made by the Recipient that may arise (whether directly or indirectly) in any way whatsoever from the Recipient’s use of these Data or from the unavailability of, or break in access to, these Data for whatever reason and; c) bear no responsibility for the further analysis or interpretation of these Data. 7. The User Institution agrees to follow the Toronto Statement (http://www.nature.com/nature/journal/v461/n7261/full/461168a.html). This includes but is not limited to recognising the contribution of the Data Producers and including a proper acknowledgement in all reports or publications resulting from the use of these Data. 8. The User Institution agrees to follow the Publication Policy of the Data. This includes respecting the moratorium period for the Data Producers to publish the first peer-reviewed report describing and analysing these Data. 9. The User Institution agrees not to make intellectual property claims on these Data and not to use intellectual property protection in ways that would prevent or block access to, or use of, any element of these Data, or conclusion drawn directly from these Data. 10. The User Institution can elect to perform further research that would add intellectual and resource capital to these data and decide to obtain intellectual property rights on these downstream discoveries. In this case, the User Institution agrees to implement licensing policies that will not obstruct further research in conformity with the Organisation for Economic Co-operation and Development Guidelines for the Licensing of the Genetic Inventions (2006) (http://www.oecd.org/science/biotech/36198812.pdf ). 11. The User Institution agrees to destroy/discard the Data held, once it is no longer used for the Project, unless obliged to retain the data for archival purposes in conformity with audit or legal requirements. 12. The User Institution will notify Nencki Institute NGS Core Facility Data Access Committee within 30 days of any changes or departures of Authorised Personnel. 13. The User Institution will notify Nencki Institute NGS Core Facility Data Access Committee prior to any significant changes to the protocol for the Project. 14. The User Institution will notify Nencki Institute NGS Core Facility Data Access Committee as soon as it becomes aware of a breach of the terms or conditions of this agreement. 15. Nencki Institute NGS Core Facility Data Access Committee may terminate this agreement by written notice to the User Institution. If this agreement terminates for any reason, the User Institution will be required to destroy any Data held, including copies and backup copies. This clause does not prevent the User Institution from retaining these data for archival purpose in conformity with audit or legal requirements. 16. The User Institution accepts that it may be necessary for the Data Producers to alter the terms of this agreement from time to time. As an example, this may include specific provisions relating to the Data required by Data Producers other than Nencki Institute NGS Core Facility Data Access Committee. In the event that changes are required, the Data Producers or their appointed agent will contact the User Institution to inform it of the changes and the User Institution may elect to accept the changes or terminate the agreement. 17. If requested, the User Institution will allow data security and management documentation to be inspected to verify that it is complying with the terms of this agreement. 18. The User Institution agrees to distribute a copy of these terms to the Authorised Personnel. The User Institution will procure that the Authorised Personnel comply with the terms of this agreement. 19. Any agreements based on that policies (and any dispute, controversy, proceedings or claim of whatever nature arising out of this agreement or its formation) shall be construed, interpreted and governed by the laws of European Union and shall be subject to the exclusive jurisdiction of the Polish and EU courts.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001004556 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00004177337 bam 3.0 GB
EGAF00004177338 bam 569.4 MB
EGAF00004177339 bam 3.0 GB
EGAF00004177340 bam 531.0 MB
EGAF00004177341 bam 1.7 GB
EGAF00004177342 bam 635.6 MB
EGAF00004177343 bam 2.8 GB
EGAF00004177344 bam 734.9 MB
EGAF00004177345 bam 879.4 MB
EGAF00004177346 bam 655.9 MB
EGAF00004177347 bam 2.7 GB
EGAF00004177348 bam 601.1 MB
EGAF00004177349 bam 1.8 GB
EGAF00004177350 bam 515.7 MB
EGAF00004177351 bam 2.0 GB
EGAF00004177352 bam 601.3 MB
EGAF00004177353 bam 2.3 GB
EGAF00004177354 bam 597.7 MB
EGAF00004177355 bam 3.2 GB
EGAF00004177356 bam 552.7 MB
EGAF00004177357 bam 2.4 GB
EGAF00004177358 bam 730.6 MB
EGAF00004177359 bam 1.4 GB
EGAF00004177360 bam 624.6 MB
EGAF00004177361 bam 1.9 GB
EGAF00004177362 bam 631.2 MB
EGAF00004177363 bam 1.1 GB
EGAF00004177364 bam 679.1 MB
EGAF00004177365 bam 1.9 GB
EGAF00004177366 bam 1.2 GB
EGAF00004177367 bam 754.8 MB
EGAF00004177368 bam 1.1 GB
EGAF00004177369 bam 653.5 MB
EGAF00004177370 bam 1.9 GB
EGAF00004177371 bam 371.5 MB
EGAF00004177372 bam 2.7 GB
EGAF00004177373 bam 504.3 MB
EGAF00004177374 bam 2.6 GB
EGAF00004177375 bam 586.7 MB
EGAF00004177376 bam 1.3 GB
EGAF00004177377 bam 673.4 MB
EGAF00004177378 bam 2.9 GB
EGAF00004177379 bam 664.6 MB
EGAF00004177380 bam 1.7 GB
EGAF00004177381 bam 2.8 GB
EGAF00004177382 bam 600.9 MB
EGAF00004177383 bam 3.5 GB
EGAF00004177384 bam 585.4 MB
EGAF00004177385 bam 3.2 GB
EGAF00004177386 bam 706.2 MB
EGAF00004177387 bam 905.8 MB
EGAF00004177388 bam 698.6 MB
EGAF00004177389 bam 1.1 GB
EGAF00004177390 bam 453.8 MB
EGAF00004177391 bam 1.4 GB
EGAF00004177392 bam 2.3 GB
EGAF00004177393 bam 1.6 GB
EGAF00004177394 bam 2.9 GB
EGAF00004177395 bam 471.7 MB
EGAF00004177396 bam 637.5 MB
EGAF00004177397 bam 2.5 GB
EGAF00004177398 bam 2.8 GB
EGAF00004177399 bam 2.0 GB
EGAF00004177400 bam 2.0 GB
EGAF00004177401 bam 3.6 GB
EGAF00004177402 bam 727.6 MB
EGAF00004177403 bam 2.5 GB
EGAF00004177404 bam 1.7 GB
EGAF00004177405 bam 2.1 GB
EGAF00004177406 bam 4.1 GB
EGAF00004177407 bam 611.1 MB
EGAF00004177408 bam 625.4 MB
EGAF00004177409 bam 3.0 GB
EGAF00004177410 bam 2.6 GB
EGAF00004177411 bam 2.2 GB
EGAF00004177412 bam 2.1 GB
EGAF00004177413 bam 2.3 GB
EGAF00004177414 bam 3.6 GB
EGAF00004177415 bam 2.7 GB
EGAF00004177416 bam 2.3 GB
EGAF00004177417 bam 2.6 GB
EGAF00004177418 bam 1.4 GB
EGAF00004177419 bam 604.5 MB
EGAF00004177420 bam 3.3 GB
EGAF00004177421 bam 2.9 GB
EGAF00004177422 bam 2.8 GB
EGAF00004177423 bam 2.0 GB
EGAF00004177424 bam 1.2 GB
EGAF00004177425 bam 1.4 GB
EGAF00004177426 bam 1.4 GB
EGAF00004177427 bam 1.2 GB
EGAF00004177428 bam 2.7 GB
EGAF00004177429 bam 2.1 GB
EGAF00004177430 bam 3.0 GB
EGAF00004177431 bam 649.5 MB
EGAF00004177432 bam 1.6 GB
EGAF00004177433 bam 3.7 GB
EGAF00004177434 bam 3.2 GB
EGAF00004177435 bam 3.4 GB
EGAF00004177436 bam 2.8 GB
EGAF00004177437 bam 2.3 GB
EGAF00004177438 bam 3.2 GB
EGAF00004177439 bam 655.7 MB
EGAF00004177440 bam 3.0 GB
EGAF00004177441 bam 1.6 GB
EGAF00004177442 bam 2.1 GB
EGAF00004177443 bam 3.2 GB
EGAF00004177444 bam 815.6 MB
EGAF00004177445 bam 2.7 GB
EGAF00004177446 bam 615.6 MB
EGAF00004177447 bam 2.5 GB
EGAF00004177448 bam 2.6 GB
EGAF00004177449 bam 1.7 GB
EGAF00004177450 bam 696.8 MB
EGAF00004177451 bam 544.0 MB
EGAF00004177452 bam 482.2 MB
EGAF00004177453 bam 2.7 GB
EGAF00004177454 bam 543.3 MB
EGAF00004177455 bam 1.8 GB
EGAF00004177456 bam 632.8 MB
EGAF00004177457 bam 1.6 GB
EGAF00004177458 bam 500.5 MB
EGAF00004177459 bam 3.3 GB
EGAF00004177460 bam 2.1 GB
EGAF00004177461 bam 1.5 GB
EGAF00004177462 bam 2.9 GB
EGAF00004177463 bam 2.4 GB
EGAF00004177464 bam 1.7 GB
EGAF00004177465 bam 393.4 MB
EGAF00004177466 bam 1.7 GB
EGAF00004177467 bam 1.4 GB
EGAF00004177468 bam 2.0 GB
EGAF00004177469 bam 631.1 MB
EGAF00004177470 bam 3.4 GB
EGAF00004177471 bam 1.5 GB
EGAF00004177472 bam 1.7 GB
EGAF00004177473 bam 2.0 GB
EGAF00004177474 bam 485.1 MB
EGAF00004177475 bam 1.4 GB
EGAF00004177476 bam 2.2 GB
EGAF00004177477 bam 1.7 GB
EGAF00004177478 bam 653.8 MB
EGAF00004177479 bam 2.5 GB
EGAF00004177480 bam 1.6 GB
EGAF00004177481 bam 2.8 GB
EGAF00004177482 bam 317.2 MB
EGAF00004177483 bam 2.0 GB
EGAF00004177484 bam 1.9 GB
EGAF00004177485 bam 2.8 GB
EGAF00004177486 bam 3.5 GB
EGAF00004177487 bam 2.5 GB
EGAF00004177488 bam 394.7 MB
EGAF00004177489 bam 2.3 GB
EGAF00004177490 bam 1.9 GB
EGAF00004177491 bam 2.6 GB
EGAF00004177492 bam 377.4 MB
EGAF00004177493 bam 1.7 GB
EGAF00004177494 bam 2.5 GB
EGAF00004177495 bam 628.4 MB
EGAF00004177496 bam 1.6 GB
EGAF00004177497 bam 2.0 GB
EGAF00004177498 bam 1.2 GB
EGAF00004177499 bam 325.9 MB
EGAF00004177500 bam 1.8 GB
EGAF00004177501 bam 2.4 GB
EGAF00004177502 bam 2.5 GB
EGAF00004177503 bam 2.5 GB
EGAF00004177504 bam 2.0 GB
EGAF00004177505 bam 278.5 MB
EGAF00004177506 bam 2.2 GB
EGAF00004177507 bam 2.2 GB
EGAF00004177508 bam 2.4 GB
EGAF00004177509 bam 2.7 GB
EGAF00004177510 bam 643.5 MB
EGAF00004177511 bam 2.9 GB
EGAF00004177512 bam 2.2 GB
EGAF00004177513 bam 1.7 GB
EGAF00004177514 bam 1.1 GB
EGAF00004177515 bam 2.6 GB
EGAF00004177516 bam 2.0 GB
EGAF00004177517 bam 2.4 GB
EGAF00004177518 bam 2.7 GB
EGAF00004177519 bam 2.5 GB
EGAF00004177520 bam 1.6 GB
EGAF00004177521 bam 2.9 GB
EGAF00004177522 bam 2.0 GB
EGAF00004177523 bam 3.5 GB
EGAF00004177524 bam 1.9 GB
EGAF00004177525 bam 2.1 GB
EGAF00004177526 bam 3.0 GB
EGAF00004177527 bam 876.6 MB
EGAF00004177528 bam 1.8 GB
EGAF00004177529 bam 1.8 GB
EGAF00004177530 bam 2.2 GB
EGAF00004177531 bam 678.2 MB
EGAF00004177532 bam 2.7 GB
EGAF00004177533 bam 817.5 MB
EGAF00004177534 bam 2.0 GB
EGAF00004177535 bam 1.8 GB
EGAF00004177536 bam 2.3 GB
EGAF00004177537 bam 3.0 GB
EGAF00004177538 bam 2.2 GB
EGAF00004177539 bam 2.6 GB
EGAF00004177540 bam 1.8 GB
EGAF00004177541 bam 2.5 GB
EGAF00004177542 bam 2.2 GB
EGAF00004177543 bam 1.2 GB
EGAF00004177544 bam 2.8 GB
EGAF00004177545 bam 2.5 GB
EGAF00004177546 bam 3.4 GB
EGAF00004177547 bam 3.3 GB
EGAF00004177548 bam 3.2 GB
EGAF00004177549 bam 1.9 GB
EGAF00004177550 bam 2.7 GB
EGAF00004177551 bam 3.1 GB
EGAF00004177552 bam 1.1 GB
EGAF00004177553 bam 2.2 GB
EGAF00004177554 bam 3.2 GB
EGAF00004177555 bam 1.8 GB
EGAF00004177556 bam 1.2 GB
EGAF00004177557 bam 2.5 GB
EGAF00004177558 bam 1.4 GB
EGAF00004177559 bam 2.6 GB
EGAF00004177560 bam 1.5 GB
EGAF00004177561 bam 2.1 GB
EGAF00004177562 bam 1.6 GB
EGAF00004177563 bam 2.7 GB
EGAF00004177564 bam 882.8 MB
EGAF00004177565 bam 2.1 GB
EGAF00004177566 bam 1.7 GB
EGAF00004177567 bam 1.8 GB
EGAF00004177568 bam 2.1 GB
EGAF00004177569 bam 1.6 GB
EGAF00004177570 bam 1.1 GB
EGAF00004177571 bam 3.2 GB
EGAF00004177572 bam 1.1 GB
EGAF00004177573 bam 2.4 GB
EGAF00004177574 bam 2.1 GB
EGAF00004177575 bam 3.2 GB
EGAF00004177576 bam 308.5 MB
EGAF00004177577 bam 2.3 GB
EGAF00004177578 bam 1.7 GB
EGAF00004177579 bam 2.1 GB
EGAF00004177580 bam 3.4 GB
EGAF00004177581 bam 1.8 GB
EGAF00004177582 bam 1.8 GB
EGAF00004177583 bam 1.0 GB
EGAF00004177584 bam 1.8 GB
EGAF00004177585 bam 1.3 GB
EGAF00004177586 bam 3.7 GB
EGAF00004177587 bam 1.7 GB
EGAF00004177588 bam 1.8 GB
EGAF00004177589 bam 2.2 GB
EGAF00004177590 bam 1.8 GB
EGAF00004177591 bam 1.7 GB
EGAF00004177592 bam 1.8 GB
EGAF00004177593 bam 3.2 GB
EGAF00004177594 bam 2.6 GB
EGAF00004177595 bam 1.8 GB
EGAF00004177596 bam 2.8 GB
EGAF00004177597 bam 2.3 GB
EGAF00004177598 bam 3.0 GB
EGAF00004177599 bam 2.9 GB
EGAF00004177600 bam 336.1 MB
EGAF00004177601 bam 2.9 GB
EGAF00004177602 bam 2.0 GB
EGAF00004177603 bam 2.6 GB
EGAF00004177604 bam 1.3 GB
EGAF00004177605 bam 1.7 GB
EGAF00004177606 bam 723.4 MB
EGAF00004177607 bam 1.5 GB
EGAF00004177608 bam 2.2 GB
EGAF00004177609 bam 2.5 GB
EGAF00004177610 bam 1.9 GB
EGAF00004177611 bam 5.3 GB
EGAF00004177612 bam 2.1 GB
EGAF00004177613 bam 3.5 GB
EGAF00004177614 bam 1.8 GB
EGAF00004177615 bam 2.3 GB
EGAF00004177616 bam 1.8 GB
EGAF00004177617 bam 2.5 GB
EGAF00004177618 bam 4.3 GB
EGAF00004177619 bam 1.8 GB
EGAF00004177620 bam 3.6 GB
EGAF00004177621 bam 2.0 GB
EGAF00004177622 bam 3.2 GB
EGAF00004177623 bam 3.0 GB
EGAF00004177624 bam 490.5 MB
EGAF00004177625 bam 3.7 GB
EGAF00004177626 bam 1.3 GB
EGAF00004177627 bam 3.8 GB
EGAF00004177628 bam 1.4 GB
EGAF00004177629 bam 2.6 GB
EGAF00004177630 bam 514.2 MB
EGAF00004177631 bam 2.4 GB
EGAF00004177632 bam 1.9 GB
EGAF00004177633 bam 1.6 GB
EGAF00004177634 bam 3.3 GB
EGAF00004177635 bam 2.7 GB
EGAF00004177636 bam 4.1 GB
EGAF00004177637 bam 2.4 GB
EGAF00004177638 bam 3.5 GB
EGAF00004177639 bam 3.2 GB
EGAF00004177640 bam 1.9 GB
EGAF00004177641 bam 1.6 GB
EGAF00004177642 bam 2.6 GB
EGAF00004177643 bam 2.2 GB
EGAF00004177644 bam 2.9 GB
EGAF00004177645 bam 2.2 GB
EGAF00004177646 bam 1.5 GB
EGAF00004177647 bam 2.5 GB
EGAF00004177648 bam 651.5 MB
EGAF00004177649 bam 2.4 GB
EGAF00004177650 bam 3.8 GB
EGAF00004177651 bam 2.4 GB
EGAF00004177652 bam 2.4 GB
EGAF00004177653 bam 2.7 GB
EGAF00004177654 bam 3.4 GB
EGAF00004177655 bam 1.6 GB
EGAF00004177656 bam 2.3 GB
EGAF00004177657 bam 562.1 MB
EGAF00004177658 bam 1.9 GB
EGAF00004177659 bam 2.4 GB
EGAF00004177660 bam 1.6 GB
EGAF00004177661 bam 2.5 GB
EGAF00004177662 bam 2.3 GB
EGAF00004177663 bam 781.1 MB
EGAF00004177664 bam 2.2 GB
EGAF00004177665 bam 2.7 GB
EGAF00004177666 bam 2.2 GB
EGAF00004177667 bam 2.3 GB
EGAF00004177668 bam 2.9 GB
EGAF00004177669 bam 591.6 MB
EGAF00004177670 bam 763.0 MB
EGAF00004177671 bam 1.6 GB
335 Files (656.8 GB)