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Shallow whole genome sequencing from plasma DNA of BC, CRC and NSCLC patients

This is the raw data obtained from shallow whole-genome sequencing of plasma DNA (plasma-Seq) for calling of somatic copy number alterations as well as focal amplifications and deletions from patients with breast, colorectal and non-small cell lung cancer.

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Whole-genome sequencing cfDNA

European Genome-Phenome Archive c/o European Bioinformatics Institute Wellcome Trust Genome Campus Hinxton Cambridge CB10 1SD United Kingdom To whom it may concern, This document refers to the study EGAS00001003206 which has been submitted to the European Genome Archive (EGA) for the restricted access by legitimate academic institutions that have agreed to comply with the terms of a Data Access Agreement drafted by Ellen Heitzer. There are a number of steps that a researcher must take to obtain access to this data and the process is overseen by Ellen Heitzer Ellen Heitzer is authorized to approve researchers to have encrypted access to the data submitted to the EGA. Please be advised that Ellen Heitzer (ellen.heitzer@medunigraz.at) is authorized to upload data to the EGA for archiving and distribution as part of your submission process, which will enable approved researchers to have encrypted access to the data. We can confirm that this submission is consistent with the informed consent of the participants of the study or has been granted ethical approval and is in accordance with the applicable laws and regulations.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00004174280 fastq.gz 467.1 MB
EGAF00004174281 fastq.gz 450.8 MB
EGAF00004174282 fastq.gz 345.3 MB
EGAF00004174283 fastq.gz 343.0 MB
EGAF00004174284 fastq.gz 254.7 MB
EGAF00004174285 fastq.gz 306.7 MB
EGAF00004174286 fastq.gz 231.8 MB
EGAF00004174287 fastq.gz 575.2 MB
EGAF00004174288 fastq.gz 324.1 MB
EGAF00004174289 fastq.gz 332.4 MB
EGAF00004174290 fastq.gz 449.3 MB
EGAF00004174291 fastq.gz 268.0 MB
EGAF00004174292 fastq.gz 444.9 MB
EGAF00004174293 fastq.gz 902.7 MB
EGAF00004174294 fastq.gz 469.9 MB
EGAF00004174295 fastq.gz 175.8 MB
EGAF00004174296 fastq.gz 271.3 MB
EGAF00004174297 fastq.gz 500.5 MB
EGAF00004174298 fastq.gz 174.0 MB
EGAF00004174299 fastq.gz 420.0 MB
EGAF00004174300 fastq.gz 469.6 MB
EGAF00004174301 fastq.gz 199.6 MB
EGAF00004174302 fastq.gz 221.6 MB
EGAF00004174303 fastq.gz 261.1 MB
EGAF00004174304 fastq.gz 375.6 MB
EGAF00004174305 fastq.gz 332.3 MB
EGAF00004174306 fastq.gz 200.4 MB
EGAF00004174307 fastq.gz 359.5 MB
EGAF00004174308 fastq.gz 132.6 MB
EGAF00004174309 fastq.gz 158.2 MB
EGAF00004174310 fastq.gz 141.0 MB
EGAF00004174311 fastq.gz 72.9 MB
EGAF00004174312 fastq.gz 115.1 MB
EGAF00004174313 fastq.gz 116.5 MB
EGAF00004174314 fastq.gz 192.2 MB
EGAF00004174315 fastq.gz 222.9 MB
EGAF00004174316 fastq.gz 173.3 MB
EGAF00004174317 fastq.gz 99.6 MB
EGAF00004174318 fastq.gz 156.3 MB
EGAF00004174319 fastq.gz 101.2 MB
EGAF00004174320 fastq.gz 95.5 MB
EGAF00004174321 fastq.gz 111.1 MB
EGAF00004174322 fastq.gz 122.1 MB
EGAF00004174323 fastq.gz 95.4 MB
EGAF00004174324 fastq.gz 191.6 MB
EGAF00004174325 fastq.gz 232.0 MB
EGAF00004174326 fastq.gz 239.3 MB
EGAF00004174327 fastq.gz 159.0 MB
48 Files (13.1 GB)