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Melanoma exome profiling

This dataset includes whole exome profiling of 65 early-passage metastatic melanoma cell lines. The data are provided as BAM files for tumor and normal samples.

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This dataset, "Multiomic profiling of early-passage melanoma cell lines" comprises sequencing-based data (transcriptome, miRnome, WES) from early-passage cell lines derived from distinct melanoma metastases. Use of the data is permissible upon valid request to the DAC for non-profit research purposes.

DATA ACCESS AGREEMENT This Data Access Agreement (“Agreement”), effective as of the ____ day of _________________, 20__ (“Effective Date”), is by and between The University of Texas M. D. Anderson Cancer Center, an institution of The University of Texas System and an agency of the State of Texas, with an address at 1515 Holcombe Boulevard, Houston, Texas 77030 (“Provider”), and _____________ (“Recipient”) on behalf of its investigator _____________ (“Recipient Investigator”) (collectively, the “Parties”; each, a “Party”). RECITALS Provider maintains the following de-identified data in the European Genome-phenome Archive (EGA) managed by the European Bioinformatics Institute (“Data”); Accession EGAS00001004536: Multiomic profiling of early-passage melanoma cell lines. This dataset contains sequencing data from early-passage cell lines derived from 68 distinct melanoma metastases. The dataset comprises files for paired-end RNA sequencing transcriptome profiling (n=68 samples; fastq), single-end small RNA sequencing microRNA profiling (n=61 samples; fastq), and whole exome sequencing (n=65 samples with paired normal peripheral blood mononuclear cells; bam) and associated metadata. Extended metadata and complete information regarding sample-normal pairings for multi-mapping associations are provided in the supplementary data of the accompanying manuscript. and Provider is willing to allow Recipient to access such Data from the EGA for the internal non-commercial research purposes of (“Purpose”); Use of the data is reserved for Non-Profit Institutions only and all findings must be made available to the public and available to the larger scientific community. Allowable Research Projects must be for cancer-related research. pursuant to the terms of this Agreement. In consideration of the mutual promises and covenants herein, and for other good and valuable consideration, the receipt and sufficiency of which is hereby acknowledged, the Parties agree as follows: 1. The Data will be used solely for the Research by Recipient Investigator and personnel under their immediate supervision at Recipient and may not be transferred to any other investigator or to any third party without prior written permission from Provider. The Material may not be used for any purpose other than the Research, including without limitation for any commercial purpose or for research in human subjects (including, without limitation, in diagnostic testing). 2. Neither Recipient nor Recipient Investigator shall disclose Data to any person or party other than the Recipient Investigator hereunder without Provider’s prior written consent. 3. The Data will be used in compliance with all applicable laws, regulations, and guidelines applicable to the Data, including without limitation any applicable export controls. 4. In any publication resulting from use of the Data, Recipient and Recipient Investigator shall acknowledge Associate Professor Scott E. Woodman (“Provider Investigator”) and Provider as the provider of the Data. 5. This Agreement shall be effective as of the Effective Date and shall remain effective until completion of the Research. Either Party may terminate this Agreement with or without cause upon thirty (30) days’ written notice to the other Party. Upon expiration or termination of this Agreement for any reason, Recipient shall destroy all Data received pursuant to this Agreement. 6. Any notice permitted or required as provided for herein shall be in writing and to the contact and address as noted below or as may be provided by either party to the other in writing from time to time.   Notice to Provider shall be to: Chief Legal Officer The University of Texas M. D. Anderson Cancer Center 1515 Holcombe Blvd., Unit 1674 Houston, Texas 77030 Phone: 713-745-6633; Facsimile: 713-745-6029 With a copy to: The University of Texas M. D. Anderson Cancer Center 1515 Holcombe Blvd., Unit 1676 Office of Research Administration Attn: AVP, Research Administration Houston, TX 77030 Phone: 713-792-3672; Facsimile: 713-792-7455 Notice to Recipient shall be to: __________________________ __________________________ __________________________ __________________________ __________________________ 7. In the event Protected Health Information (“PHI”), as defined by the federal Health Insurance Portability and Accountability Act of 1996 (“HIPAA”), as amended, is inadvertently created, accessed by, and/or disclosed to Recipient in connection with this Agreement, Recipient will immediately notify the Provider and will return to Provider or destroy such PHI, in accordance with the Provider’s instructions. Pending return or destruction of any PHI, Recipient shall maintain the confidentiality of all Data (including the PHI) and use appropriate safeguards to prevent access to, use, or disclosure of Data (including the PHI). 8. PROVIDER MAKES NO REPRESENTATION OR WARRANTY CONCERNING THE MATERIAL, INCLUDING WITHOUT LIMITATION, WARRANTY OF MERCHANTABILITY OR FITNESS FOR A PARTICULAR PURPOSE OR ANY OTHER WARRANTY, EXPRESS OR IMPLIED. 9. Recipient Investigator and Recipient accept all liability for any use of the Data and for any loss, claim, or damage which may arise from or in connection with this Agreement or the use, handling or storage of the Data and in no event shall Provider or Provider Investigator be liable for any such use, loss, claim or damage. 10. This Agreement is via the EGA mechanism.   [Insert Recipient Name Here] THE UNIVERSITY OF TEXAS M. D. ANDERSON CANCER CENTER By: By: Name: Name: Title: Title: Date: Date: Read and Understood: Read and Understood: Recipient Scientist: Provider Scientist: Name: Name: Title: Title: Date: Date:

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00004170959 bam 20.7 GB
EGAF00004170960 bam 35.6 GB
EGAF00004170961 bam 18.1 GB
EGAF00004170962 bam 34.8 GB
EGAF00004170963 bam 21.4 GB
EGAF00004170964 bam 28.4 GB
EGAF00004170965 bam 18.8 GB
EGAF00004170966 bam 38.8 GB
EGAF00004170967 bam 23.2 GB
EGAF00004170968 bam 41.0 GB
EGAF00004170969 bam 17.5 GB
EGAF00004170970 bam 36.1 GB
EGAF00004170971 bam 27.0 GB
EGAF00004170972 bam 54.2 GB
EGAF00004170973 bam 23.2 GB
EGAF00004170974 bam 41.4 GB
EGAF00004170975 bam 18.3 GB
EGAF00004170976 bam 33.2 GB
EGAF00004170977 bam 18.8 GB
EGAF00004170978 bam 36.1 GB
EGAF00004170979 bam 18.8 GB
EGAF00004170980 bam 44.3 GB
EGAF00004170981 bam 21.0 GB
EGAF00004170982 bam 32.5 GB
EGAF00004170983 bam 21.6 GB
EGAF00004170984 bam 36.3 GB
EGAF00004170985 bam 22.2 GB
EGAF00004170986 bam 44.6 GB
EGAF00004170987 bam 16.7 GB
EGAF00004170988 bam 33.3 GB
EGAF00004170989 bam 23.9 GB
EGAF00004170990 bam 37.6 GB
EGAF00004170991 bam 28.6 GB
EGAF00004170992 bam 19.6 GB
EGAF00004170993 bam 42.6 GB
EGAF00004170994 bam 18.4 GB
EGAF00004170995 bam 38.4 GB
EGAF00004170996 bam 25.0 GB
EGAF00004170997 bam 29.4 GB
EGAF00004170998 bam 17.0 GB
EGAF00004170999 bam 39.3 GB
EGAF00004171000 bam 12.3 GB
EGAF00004171001 bam 42.3 GB
EGAF00004171002 bam 20.0 GB
EGAF00004171003 bam 34.5 GB
EGAF00004171004 bam 21.1 GB
EGAF00004171005 bam 36.4 GB
EGAF00004171006 bam 22.2 GB
EGAF00004171007 bam 41.5 GB
EGAF00004171008 bam 16.2 GB
EGAF00004171009 bam 29.8 GB
EGAF00004171010 bam 23.5 GB
EGAF00004171011 bam 34.3 GB
EGAF00004171012 bam 18.9 GB
EGAF00004171013 bam 39.7 GB
EGAF00004171014 bam 19.3 GB
EGAF00004171015 bam 46.1 GB
EGAF00004171016 bam 15.7 GB
EGAF00004171017 bam 38.1 GB
EGAF00004171018 bam 17.3 GB
EGAF00004171019 bam 41.8 GB
EGAF00004171020 bam 15.4 GB
EGAF00004171021 bam 38.0 GB
EGAF00004171022 bam 14.5 GB
EGAF00004171023 bam 34.5 GB
EGAF00004171024 bam 18.4 GB
EGAF00004171025 bam 36.1 GB
EGAF00004171026 bam 21.0 GB
EGAF00004171027 bam 25.4 GB
EGAF00004171028 bam 38.9 GB
EGAF00004171029 bam 16.6 GB
EGAF00004171030 bam 41.1 GB
EGAF00004171031 bam 21.4 GB
EGAF00004171032 bam 26.9 GB
EGAF00004171033 bam 18.2 GB
EGAF00004171034 bam 32.2 GB
EGAF00004171035 bam 25.4 GB
EGAF00004171036 bam 33.7 GB
EGAF00004171037 bam 17.8 GB
EGAF00004171038 bam 33.2 GB
EGAF00004171039 bam 21.4 GB
EGAF00004171040 bam 42.4 GB
EGAF00004171041 bam 17.4 GB
EGAF00004171042 bam 39.8 GB
EGAF00004171043 bam 33.0 GB
EGAF00004171044 bam 39.1 GB
EGAF00004171045 bam 14.3 GB
EGAF00004171046 bam 32.9 GB
EGAF00004171047 bam 19.4 GB
EGAF00004171048 bam 30.8 GB
EGAF00004171049 bam 18.7 GB
EGAF00004171050 bam 40.0 GB
EGAF00004171051 bam 22.0 GB
EGAF00004171052 bam 35.0 GB
EGAF00004171053 bam 23.2 GB
EGAF00004171054 bam 39.1 GB
EGAF00004171055 bam 20.4 GB
EGAF00004171056 bam 21.7 GB
EGAF00004171057 bam 22.4 GB
EGAF00004171058 bam 29.3 GB
EGAF00004171059 bam 15.5 GB
EGAF00004171060 bam 40.1 GB
EGAF00004171061 bam 18.0 GB
EGAF00004171062 bam 32.5 GB
EGAF00004171063 bam 19.0 GB
EGAF00004171064 bam 30.1 GB
EGAF00004171065 bam 19.0 GB
EGAF00004171066 bam 33.6 GB
EGAF00004171067 bam 22.9 GB
EGAF00004171068 bam 35.3 GB
EGAF00004171069 bam 20.9 GB
EGAF00004171070 bam 34.3 GB
EGAF00004171071 bam 22.4 GB
EGAF00004171072 bam 30.0 GB
EGAF00004171073 bam 20.0 GB
EGAF00004171074 bam 29.6 GB
EGAF00004171075 bam 24.5 GB
EGAF00004171076 bam 34.5 GB
EGAF00004171077 bam 20.5 GB
EGAF00004171078 bam 33.2 GB
EGAF00004171079 bam 34.7 GB
EGAF00004171080 bam 16.7 GB
EGAF00004171081 bam 37.0 GB
EGAF00004171082 bam 18.6 GB
EGAF00004171083 bam 40.2 GB
EGAF00004171084 bam 19.9 GB
EGAF00004171187 bai 4.9 MB
EGAF00004171188 bai 5.1 MB
EGAF00004171189 bai 5.0 MB
EGAF00004171191 bai 5.0 MB
EGAF00004171192 bai 5.1 MB
EGAF00004171193 bai 5.0 MB
EGAF00004171194 bai 5.0 MB
EGAF00004171196 bai 5.0 MB
EGAF00004171197 bai 5.0 MB
EGAF00004171198 bai 5.0 MB
EGAF00004171199 bai 4.9 MB
EGAF00004171200 bai 5.0 MB
EGAF00004171201 bai 5.0 MB
EGAF00004171202 bai 4.9 MB
EGAF00004171203 bai 5.0 MB
EGAF00004171204 bai 4.9 MB
EGAF00004171205 bai 5.0 MB
EGAF00004171206 bai 5.0 MB
EGAF00004171207 bai 5.0 MB
EGAF00004171208 bai 5.0 MB
EGAF00004171209 bai 5.0 MB
EGAF00004171210 bai 5.0 MB
EGAF00004171211 bai 5.1 MB
EGAF00004171212 bai 5.1 MB
EGAF00004171213 bai 5.0 MB
EGAF00004171214 bai 4.9 MB
EGAF00004171215 bai 4.9 MB
EGAF00004171216 bai 5.0 MB
EGAF00004171217 bai 5.0 MB
EGAF00004171218 bai 5.1 MB
EGAF00004171219 bai 5.0 MB
EGAF00004171220 bai 4.9 MB
EGAF00004171221 bai 5.0 MB
EGAF00004171222 bai 4.9 MB
EGAF00004171223 bai 5.0 MB
EGAF00004171225 bai 5.0 MB
EGAF00004171226 bai 5.1 MB
EGAF00004171227 bai 5.1 MB
EGAF00004171229 bai 5.0 MB
EGAF00004171230 bai 4.9 MB
EGAF00004171231 bai 4.9 MB
EGAF00004171233 bai 5.0 MB
EGAF00004171234 bai 5.0 MB
EGAF00004171235 bai 4.9 MB
EGAF00004171236 bai 5.0 MB
EGAF00004171237 bai 5.0 MB
EGAF00004171238 bai 5.0 MB
EGAF00004171239 bai 5.0 MB
EGAF00004171241 bai 5.1 MB
EGAF00004171242 bai 5.0 MB
EGAF00004171243 bai 5.0 MB
EGAF00004171244 bai 5.0 MB
EGAF00004171245 bai 5.1 MB
EGAF00004171246 bai 5.0 MB
EGAF00004171247 bai 5.1 MB
EGAF00004171249 bai 4.9 MB
EGAF00004171250 bai 5.0 MB
EGAF00004171252 bai 5.1 MB
EGAF00004171253 bai 5.0 MB
EGAF00004171254 bai 5.1 MB
EGAF00004171255 bai 5.0 MB
EGAF00004171256 bai 4.9 MB
EGAF00004171257 bai 5.1 MB
EGAF00004171258 bai 5.0 MB
EGAF00004171259 bai 5.0 MB
EGAF00004171260 bai 5.0 MB
EGAF00004171261 bai 4.9 MB
EGAF00004171262 bai 5.0 MB
EGAF00004171264 bai 5.0 MB
EGAF00004171265 bai 5.1 MB
EGAF00004171266 bai 5.1 MB
EGAF00004171267 bai 5.0 MB
EGAF00004171269 bai 5.0 MB
EGAF00004171270 bai 5.2 MB
EGAF00004171271 bai 5.0 MB
EGAF00004171272 bai 5.0 MB
EGAF00004171273 bai 5.0 MB
EGAF00004171274 bai 4.9 MB
EGAF00004171275 bai 4.9 MB
EGAF00004171276 bai 5.0 MB
EGAF00004171277 bai 4.9 MB
EGAF00004171278 bai 5.1 MB
EGAF00004171279 bai 5.0 MB
EGAF00004171280 bai 5.0 MB
EGAF00004171281 bai 5.1 MB
EGAF00004171283 bai 5.0 MB
EGAF00004171284 bai 5.0 MB
EGAF00004171285 bai 5.0 MB
EGAF00004171286 bai 4.9 MB
EGAF00004171287 bai 4.9 MB
EGAF00004171289 bai 5.0 MB
EGAF00004171290 bai 4.9 MB
EGAF00004171291 bai 4.9 MB
EGAF00004171292 bai 5.0 MB
EGAF00004171294 bai 4.9 MB
EGAF00004171295 bai 5.0 MB
EGAF00004171296 bai 4.9 MB
EGAF00004171297 bai 5.0 MB
EGAF00004171298 bai 5.1 MB
EGAF00004171301 bai 5.1 MB
EGAF00004171302 bai 5.2 MB
EGAF00004171303 bai 5.0 MB
EGAF00004171304 bai 5.1 MB
EGAF00004171305 bai 5.0 MB
EGAF00004171307 bai 5.1 MB
EGAF00004171308 bai 5.0 MB
EGAF00004171309 bai 4.9 MB
EGAF00004171310 bai 5.1 MB
EGAF00004171312 bai 4.9 MB
EGAF00004186357 bai 5.1 MB
EGAF00004186363 bai 5.1 MB
EGAF00004186416 bai 4.9 MB
EGAF00004186424 bai 5.0 MB
EGAF00004186430 bai 5.0 MB
EGAF00004186441 bai 5.0 MB
EGAF00004186456 bai 4.9 MB
EGAF00004186462 bai 5.1 MB
EGAF00004186483 bai 4.9 MB
EGAF00004186490 bai 5.0 MB
EGAF00004186521 bai 5.0 MB
EGAF00004186528 bai 5.0 MB
EGAF00004186534 bai 5.0 MB
EGAF00004186543 bai 5.1 MB
EGAF00004186544 bai 4.9 MB
EGAF00004186561 bai 5.1 MB
EGAF00004186569 bai 5.1 MB
252 Files (3.5 TB)