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RNA-Sequencing and Somatic Mutation Status of Adrenocortical Tumors: Novel Pathogenetic Insights

RNA paired end sequencing of 59 adrenocortical tumors and 4 controls.

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DAC - Adrenocortical Tumors

DATA ACCESS AGREEMENT These terms and conditions govern access to the managed access datasets (details of which are set out in Appendix I) to which the User Institution has requested access. The User Institution agrees to be bound by these terms and conditions. Definitions Authorised Personnel: The individuals at the User Institution to whom XXXXX grants access to the Data. This includes the User, the individuals listed in Appendix II and any other individuals for whom the User Institution subsequently requests access to the Data. Details of the initial Authorised Personnel are set out in Appendix II. Data: The managed access datasets to which the User Institution has requested access. Data Producers: XXXXX and the collaborators listed in Appendix I responsible for the development, organisation, and oversight of these Data. External Collaborator: A collaborator of the User, working for an institution other than the User Institution. Project: The project for which the User Institution has requested access to these Data. A description of the Project is set out in Appendix II. Publications: Includes, without limitation, articles published in print journals, electronic journals, reviews, books, posters and other written and verbal presentations of research. Research Participant: An individual whose data form part of these Data. Research Purposes: Shall mean research that is seeking to advance the understanding of genetics and genomics, including the treatment of disorders, and work on statistical methods that may be applied to such research. User: The principal investigator for the Project. User Institution(s): The Institution that has requested access to the Data. XXXXX: Your Institution details here 1. The User Institution agrees to only use these Data for the purpose of the Project (described in Appendix II) and only for Research Purposes. The User Institution further agrees that it will only use these Data for Research Purposes which are within the limitations (if any) set out in Appendix I. 2. The User Institution agrees to preserve, at all times, the confidentiality of these Data. In particular, it undertakes not to use, or attempt to use these Data to compromise or otherwise infringe the confidentiality of information on Research Participants. Without prejudice to the generality of the foregoing, the User Institution agrees to use at least the measures set out in Appendix I to protect these Data. 3. The User Institution agrees to protect the confidentiality of Research Participants in any research papers or publications that they prepare by taking all reasonable care to limit the possibility of identification. 4. The User Institution agrees not to link or combine these Data to other information or archived data available in a way that could re-identify the Research Participants, even if access to that data has been formally granted to the User Institution or is freely available without restriction. 5. The User Institution agrees only to transfer or disclose these Data, in whole or part, or any material derived from these Data, to the Authorised Personnel. Should the User Institution wish to share these Data with an External Collaborator, the External Collaborator must complete a separate application for access to these Data. 6. The User Institution agrees that the Data Producers, and all other parties involved in the creation, funding or protection of these Data: a) make no warranty or representation, express or implied as to the accuracy, quality or comprehensiveness of these Data; b) exclude to the fullest extent permitted by law all liability for actions, claims, proceedings, demands, losses (including but not limited to loss of profit), costs, awards damages and payments made by the Recipient that may arise (whether directly or indirectly) in any way whatsoever from the Recipient’s use of these Data or from the unavailability of, or break in access to, these Data for whatever reason and; c) bear no responsibility for the further analysis or interpretation of these Data. 7. The User Institution agrees to follow the Fort Lauderdale Guidelines (http://www.wellcome.ac.uk/stellent/groups/corporatesite/@policy_communications/documents/web_document/wtd003207.pdf ) and the Toronto Statement (http://www.nature.com/nature/journal/v461/n7261/full/461168a.html). This includes but is not limited to recognising the contribution of the Data Producers and including a proper acknowledgement in all reports or publications resulting from the use of these Data. 8. The User Institution agrees to follow the Publication Policy in Appendix III. This includes respecting the moratorium period for the Data Producers to publish the first peer-reviewed report describing and analysing these Data. 9. The User Institution agrees not to make intellectual property claims on these Data and not to use intellectual property protection in ways that would prevent or block access to, or use of, any element of these Data, or conclusion drawn directly from these Data. 10. The User Institution can elect to perform further research that would add intellectual and resource capital to these data and decide to obtain intellectual property rights on these downstream discoveries. In this case, the User Institution agrees to implement licensing policies that will not obstruct further research and to follow the U.S. National Institutes of Health Best Practices for the Licensing of Genomic Inventions (2005) (https://www.icgc.org/files/daco/NIH_BestPracticesLicensingGenomicInventions_2005_en.pdf ) in conformity with the Organisation for Economic Co-operation and Development Guidelines for the Licensing of the Genetic Inventions (2006) (http://www.oecd.org/science/biotech/36198812.pdf ). 11. The User Institution agrees to destroy/discard the Data held, once it is no longer used for the Project, unless obliged to retain the data for archival purposes in conformity with audit or legal requirements. 12. The User Institution will notify XXXXX within 30 days of any changes or departures of Authorised Personnel. 13. The User Institution will notify XXXXX prior to any significant changes to the protocol for the Project. 14. The User Institution will notify XXXXX as soon as it becomes aware of a breach of the terms or conditions of this agreement. 15. XXXXX may terminate this agreement by written notice to the User Institution. If this agreement terminates for any reason, the User Institution will be required to destroy any Data held, including copies and backup copies. This clause does not prevent the User Institution from retaining these data for archival purpose in conformity with audit or legal requirements. 16. The User Institution accepts that it may be necessary for the Data Producers to alter the terms of this agreement from time to time. As an example, this may include specific provisions relating to the Data required by Data Producers other than XXXXX. In the event that changes are required, the Data Producers or their appointed agent will contact the User Institution to inform it of the changes and the User Institution may elect to accept the changes or terminate the agreement. 17. If requested, the User Institution will allow data security and management documentation to be inspected to verify that it is complying with the terms of this agreement. 18. The User Institution agrees to distribute a copy of these terms to the Authorised Personnel. The User Institution will procure that the Authorised Personnel comply with the terms of this agreement. Agreed for User Institution Signature:   Name:   Title:   Date:   Principal Investigator I confirm that I have read and understood this Agreement. Signature:   Name:   Title:   Date:   Agreed for XXXXX Signature:   Name:   Title:   Date:   APPENDIX I – DATASET DETAILS APPENDIX II ––PROJECT DETAILS APPENDIX III –– PUBLICATION POLICY APPENDIX I – DATASET DETAILS (to be completed by the data producer before passing to applicant) Dataset reference (EGA Study ID and Dataset Details) Name of project that created the dataset Names of other data producers/collaborators Specific limitations on areas of research Minimum protection measures required File access: Data can be held in unencrypted files on an institutional compute system, with Unix user group read/write access for one or more appropriate groups but not Unix world read/write access behind a secure firewall. Laptops holding these data should have password protected logins and screenlocks (set to lock after 5 min of inactivity). If held on USB keys or other portable hard drives, the data must be encrypted. APPENDIX II – PROJECT DETAILS (to be completed by the Requestor) Details of dataset requested i.e., EGA Study and Dataset Accession Number Brief abstract of the Project in which the Data will be used (500 words max) All Individuals who the User Institution to be named as registered users Name of Registered User Email Job Title Supervisor* All Individuals that should have an account created at the EGA Name of Registered User Email Job Title APPENDIX III – PUBLICATION POLICY XXXXX intend to publish the results of their analysis of this dataset and do not consider its deposition into public databases to be the equivalent of such publications. XXXXX anticipate that the dataset could be useful to other qualified researchers for a variety of purposes. However, some areas of work are subject to a publication moratorium. The publication moratorium covers any publications (including oral communications) that describe the use of the dataset. For research papers, submission for publication should not occur until XX months after these data were first made available on the relevant hosting database, unless XXXXX has provided written consent to earlier submission. In any publications based on these data, please describe how the data can be accessed, including the name of the hosting database (e.g., The European Genome-phenome Archive at the European Bioinformatics Institute) and its accession numbers (e.g., EGAS00000000029), and acknowledge its use in a form agreed by the User Institution with XXXXX.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00004170012 fq.gz 3.9 GB
EGAF00004170013 fq.gz 4.0 GB
EGAF00004170014 fq.gz 4.7 GB
EGAF00004170015 fq.gz 4.9 GB
EGAF00004170016 fq.gz 2.5 GB
EGAF00004170017 fq.gz 2.6 GB
EGAF00004170018 fq.gz 2.7 GB
EGAF00004170019 fq.gz 2.9 GB
EGAF00004170020 fq.gz 4.4 GB
EGAF00004170021 fq.gz 4.6 GB
EGAF00004170022 fq.gz 3.8 GB
EGAF00004170023 fq.gz 4.0 GB
EGAF00004170024 fq.gz 3.4 GB
EGAF00004170025 fq.gz 3.5 GB
EGAF00004170026 fq.gz 3.2 GB
EGAF00004170027 fq.gz 3.3 GB
EGAF00004170028 fq.gz 3.1 GB
EGAF00004170029 fq.gz 3.2 GB
EGAF00004170030 fq.gz 3.2 GB
EGAF00004170031 fq.gz 3.3 GB
EGAF00004170032 fq.gz 2.6 GB
EGAF00004170033 fq.gz 2.7 GB
EGAF00004170034 fq.gz 4.0 GB
EGAF00004170035 fq.gz 4.2 GB
EGAF00004170036 fq.gz 3.9 GB
EGAF00004170037 fq.gz 4.0 GB
EGAF00004170038 fq.gz 3.5 GB
EGAF00004170039 fq.gz 3.6 GB
EGAF00004170040 fq.gz 3.2 GB
EGAF00004170041 fq.gz 3.3 GB
EGAF00004170042 fq.gz 3.3 GB
EGAF00004170043 fq.gz 3.4 GB
EGAF00004170044 fq.gz 3.1 GB
EGAF00004170045 fq.gz 3.1 GB
EGAF00004170046 fq.gz 1.9 GB
EGAF00004170047 fq.gz 1.9 GB
EGAF00004170048 fq.gz 1.9 GB
EGAF00004170049 fq.gz 2.0 GB
EGAF00004170050 fq.gz 2.0 GB
EGAF00004170051 fq.gz 2.1 GB
EGAF00004170052 fq.gz 3.9 GB
EGAF00004170053 fq.gz 4.0 GB
EGAF00004170054 fq.gz 3.8 GB
EGAF00004170055 fq.gz 3.9 GB
EGAF00004170056 fq.gz 3.4 GB
EGAF00004170057 fq.gz 3.5 GB
EGAF00004170058 fq.gz 3.1 GB
EGAF00004170059 fq.gz 3.2 GB
EGAF00004170060 fq.gz 3.0 GB
EGAF00004170061 fq.gz 3.1 GB
EGAF00004170062 fq.gz 3.1 GB
EGAF00004170063 fq.gz 3.2 GB
EGAF00004170064 fq.gz 3.1 GB
EGAF00004170065 fq.gz 3.2 GB
EGAF00004170066 fq.gz 1.9 GB
EGAF00004170067 fq.gz 1.9 GB
EGAF00004170068 fq.gz 1.8 GB
EGAF00004170069 fq.gz 1.9 GB
EGAF00004170070 fq.gz 1.9 GB
EGAF00004170071 fq.gz 2.0 GB
EGAF00004170072 fq.gz 1.9 GB
EGAF00004170073 fq.gz 2.0 GB
EGAF00004170074 fq.gz 2.1 GB
EGAF00004170075 fq.gz 2.2 GB
EGAF00004170076 fq.gz 2.0 GB
EGAF00004170077 fq.gz 2.1 GB
EGAF00004170078 fq.gz 1.9 GB
EGAF00004170079 fq.gz 1.9 GB
EGAF00004170080 fq.gz 1.9 GB
EGAF00004170081 fq.gz 2.1 GB
EGAF00004170082 fq.gz 1.8 GB
EGAF00004170083 fq.gz 1.9 GB
EGAF00004170084 fq.gz 4.0 GB
EGAF00004170085 fq.gz 4.1 GB
EGAF00004170086 fq.gz 4.6 GB
EGAF00004170087 fq.gz 4.8 GB
EGAF00004170088 fq.gz 3.7 GB
EGAF00004170089 fq.gz 3.8 GB
EGAF00004170090 fq.gz 3.7 GB
EGAF00004170091 fq.gz 3.8 GB
EGAF00004170092 fq.gz 3.9 GB
EGAF00004170093 fq.gz 4.0 GB
EGAF00004170094 fq.gz 3.2 GB
EGAF00004170095 fq.gz 3.3 GB
EGAF00004170096 fq.gz 3.2 GB
EGAF00004170097 fq.gz 3.3 GB
EGAF00004170098 fq.gz 3.1 GB
EGAF00004170099 fq.gz 3.2 GB
EGAF00004170100 fq.gz 3.0 GB
EGAF00004170101 fq.gz 3.2 GB
EGAF00004170102 fq.gz 3.4 GB
EGAF00004170103 fq.gz 3.5 GB
EGAF00004170104 fq.gz 3.1 GB
EGAF00004170105 fq.gz 3.2 GB
EGAF00004170106 fq.gz 2.9 GB
EGAF00004170107 fq.gz 3.0 GB
EGAF00004170108 fq.gz 3.1 GB
EGAF00004170109 fq.gz 3.2 GB
EGAF00004170110 fq.gz 2.9 GB
EGAF00004170111 fq.gz 3.0 GB
EGAF00004170112 fq.gz 1.9 GB
EGAF00004170113 fq.gz 2.0 GB
EGAF00004170114 fq.gz 2.0 GB
EGAF00004170115 fq.gz 2.1 GB
EGAF00004170116 fq.gz 1.9 GB
EGAF00004170117 fq.gz 2.0 GB
EGAF00004170118 fq.gz 1.8 GB
EGAF00004170119 fq.gz 1.8 GB
EGAF00004170120 fq.gz 2.1 GB
EGAF00004170121 fq.gz 2.2 GB
EGAF00004170122 fq.gz 2.0 GB
EGAF00004170123 fq.gz 2.1 GB
EGAF00004170124 fq.gz 2.1 GB
EGAF00004170125 fq.gz 2.2 GB
EGAF00004170126 fq.gz 2.1 GB
EGAF00004170127 fq.gz 2.1 GB
EGAF00004170128 fq.gz 1.8 GB
EGAF00004170129 fq.gz 1.9 GB
EGAF00004170130 fq.gz 1.7 GB
EGAF00004170131 fq.gz 1.8 GB
EGAF00004170132 fq.gz 1.8 GB
EGAF00004170133 fq.gz 1.8 GB
EGAF00004170134 fq.gz 1.9 GB
EGAF00004170135 fq.gz 1.9 GB
EGAF00004170136 fq.gz 2.3 GB
EGAF00004170137 fq.gz 2.4 GB
126 Files (362.6 GB)