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RNA-Seq of paediatric patients with B lymphoblastic leukemia

Whole transcriptome RNA-Sequencing was performed on 148 bone marrow or peripheral blood samples of B-ALL patients.

Request Access

RNA-Seq data access policy

DATA ACCESS AGREEMENT These terms and conditions govern access to the managed access datasets (details of which are set out in Appendix I) to which the User Institution has requested access. The User Institution agrees to be bound by these terms and conditions. Definitions Authorised Personnel: The individuals at the User Institution to whom National University of Singapore grants access to the Data. This includes the User, the individuals listed in Appendix II and any other individuals for whom the User Institution subsequently requests access to the Data. Details of the initial Authorised Personnel are set out in Appendix II. Data: The managed access datasets to which the User Institution has requested access. Data Producers: National University of Singapore and the collaborators listed in Appendix I responsible for the development, organisation, and oversight of these Data. External Collaborator: A collaborator of the User, working for an institution other than the User Institution. Project: The project for which the User Institution has requested access to these Data. A description of the Project is set out in Appendix II. Publications: Includes, without limitation, articles published in print journals, electronic journals, reviews, books, posters and other written and verbal presentations of research. Research Participant: An individual whose data form part of these Data. Research Purposes: Shall mean research that is seeking to advance the understanding of genetics and genomics, including the treatment of disorders, and work on statistical methods that may be applied to such research. User: The principal investigator for the Project. User Institution(s): The Institution that has requested access to the Data. 1. The User Institution agrees to only use these Data for the purpose of the Project (described in Appendix II) and only for Research Purposes. The User Institution further agrees that it will only use these Data for Research Purposes which are within the limitations (if any) set out in Appendix I. 2. The User Institution agrees to preserve, at all times, the confidentiality of these Data. In particular, it undertakes not to use, or attempt to use these Data to compromise or otherwise infringe the confidentiality of information on Research Participants. Without prejudice to the generality of the foregoing, the User Institution agrees to use at least the measures set out in Appendix I to protect these Data. 3. The User Institution agrees to protect the confidentiality of Research Participants in any research papers or publications that they prepare by taking all reasonable care to limit the possibility of identification. 4. The User Institution agrees not to link or combine these Data to other information or archived data available in a way that could re-identify the Research Participants, even if access to that data has been formally granted to the User Institution or is freely available without restriction. 5. The User Institution agrees only to transfer or disclose these Data, in whole or part, or any material derived from these Data, to the Authorised Personnel. Should the User Institution wish to share these Data with an External Collaborator, the External Collaborator must complete a separate application for access to these Data. 6. The User Institution agrees that the Data Producers, and all other parties involved in the creation, funding or protection of these Data: a) make no warranty or representation, express or implied as to the accuracy, quality or comprehensiveness of these Data; b) exclude to the fullest extent permitted by law all liability for actions, claims, proceedings, demands, losses (including but not limited to loss of profit), costs, awards damages and payments made by the User and/or the User Institution that may arise (whether directly or indirectly) in any way whatsoever from the User’s and/or User Institutions’ use of these Data or from the unavailability of, or break in access to, these Data for whatever reason and; c) bear no responsibility for the further analysis or interpretation of these Data. 7. The User Institution agrees to follow the Fort Lauderdale Guidelines (http://www.wellcome.ac.uk/stellent/groups/corporatesite/@policy_communications/documents/web_document/wtd003207.pdf ) and the Toronto Statement (http://www.nature.com/nature/journal/v461/n7261/full/461168a.html). This includes but is not limited to recognising the contribution of the Data Producers and including a proper acknowledgement in all reports or publications resulting from the use of these Data. 8. The User Institution agrees to follow the Publication Policy in Appendix III. This includes respecting the moratorium period for the Data Producers to publish the first peer-reviewed report describing and analysing the Data. 9. The User Institution agrees not to make intellectual property claims on these Data and not to use intellectual property protection in ways that would prevent or block access to, or use of, any element of these Data, or conclusion drawn directly from these Data. 10. The User Institution can elect to perform further research that would add intellectual and resource capital to the Data and decide to obtain intellectual property rights on these downstream discoveries. In this case, the User Institution agrees to implement licensing policies that will not obstruct further research and to follow the U.S. National Institutes of Health Best Practices for the Licensing of Genomic Inventions (2005) (https://www.icgc.org/files/daco/NIH_BestPracticesLicensingGenomicInventions_2005_en.pdf ) in conformity with the Organisation for Economic Co-operation and Development Guidelines for the Licensing of the Genetic Inventions (2006) (http://www.oecd.org/science/biotech/36198812.pdf ). 11. The User Institution agrees to destroy/discard the Data held, once it is no longer used for the Project, unless obliged to retain the data for archival purposes in conformity with audit or legal requirements. 12. The User Institution will notify National University of Singapore within 30 days of any changes or departures of Authorised Personnel. 13. The User Institution will notify National University of Singapore prior to any significant changes to the protocol for the Project. 14. The User Institution will notify National University of Singapore as soon as it becomes aware of a breach of the terms or conditions of this agreement. 15. National University of Singapore may terminate this agreement immediately by written notice to the User Institution. If this agreement terminates for any reason, the User Institution will be required to destroy any Data held, including copies and backup copies. This clause does not prevent the User Institution from retaining these data for archival purpose in conformity with audit or legal requirements. 16. The User Institution accepts that it may be necessary for the Data Producers to alter the terms of this agreement from time to time. As an example, this may include specific provisions relating to the Data required by Data Producers other than National University of Singapore. In the event that changes are required, the Data Producers or their appointed agent will contact the User Institution to inform it of the changes and the User Institution may elect to accept the changes or terminate the agreement. 17. If requested, the User Institution will allow data security and management documentation to be inspected to verify that it is complying with the terms of this agreement. 18. The User Institution agrees to distribute a copy of these terms to the Authorised Personnel. The User Institution will procure that the Authorised Personnel comply with the terms of this agreement. 19. This agreement (and any dispute, controversy, proceedings or claim of whatever nature arising out of this agreement or its formation) shall be construed, interpreted and governed by the laws of Singapore and shall be subject to the exclusive jurisdiction of the courts in Singapore. APPENDIX I – DATASET DETAILS Dataset reference (EGA Study ID and Dataset Details) Name of project that created the dataset Names of other data producers/collaborators Specific limitations on areas of research Minimum protection measures required File access: Data can be held in unencrypted files on an institutional compute system, with Unix user group read/write access for one or more appropriate groups but not Unix world read/write access behind a secure firewall. Laptops holding these data should have password protected logins and screenlocks (set to lock after 5 min of inactivity). If held on USB keys or other portable hard drives, the data must be encrypted. APPENDIX II – PROJECT DETAILS (to be completed by the Requestor) Details of dataset requested i.e., EGA Study and Dataset Accession Number Brief abstract of the Project in which the Data will be used (500 words max) All Individuals who the User Institution to be named as registered users Name of Registered User Email Job Title Supervisor* All Individuals that should have an account created at the EGA Name of Registered User Email Job Title APPENDIX III – PUBLICATION POLICY National University of Singapore intend to publish the results of their analysis of this dataset and do not consider its deposition into public databases to be the equivalent of such publications. National University of Singapore anticipate that the dataset could be useful to other qualified researchers for a variety of purposes. However, some areas of work are subject to a publication moratorium. The publication moratorium covers any publications (including oral communications) that describe the use of the dataset. For research papers, submission for publication should not occur until 24 months after these data were first made available on the relevant hosting database, unless National University of Singapore has provided written consent to earlier submission. In any publications based on these data, please describe how the data can be accessed, including the name of the hosting database (e.g., The European Genome-phenome Archive at the European Bioinformatics Institute) and its accession numbers (e.g., EGAS00000000029), and acknowledge its use in a form agreed by the User Institution with National University of Singapore.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00004169716 fastq.gz 3.3 GB
EGAF00004169717 fastq.gz 3.3 GB
EGAF00004169718 fastq.gz 3.4 GB
EGAF00004169719 fastq.gz 3.4 GB
EGAF00004169720 fastq.gz 3.3 GB
EGAF00004169721 fastq.gz 3.3 GB
EGAF00004169722 fastq.gz 2.8 GB
EGAF00004169723 fastq.gz 2.8 GB
EGAF00004169724 fastq.gz 2.4 GB
EGAF00004169725 fastq.gz 2.4 GB
EGAF00004169726 fastq.gz 2.7 GB
EGAF00004169727 fastq.gz 2.7 GB
EGAF00004169728 fastq.gz 2.4 GB
EGAF00004169729 fastq.gz 2.4 GB
EGAF00004169730 fastq.gz 2.3 GB
EGAF00004169731 fastq.gz 2.2 GB
EGAF00004169732 fastq.gz 1.9 GB
EGAF00004169733 fastq.gz 1.9 GB
EGAF00004169734 fastq.gz 2.5 GB
EGAF00004169735 fastq.gz 2.5 GB
EGAF00004169736 fastq.gz 3.2 GB
EGAF00004169737 fastq.gz 3.2 GB
EGAF00004169738 fastq.gz 4.3 GB
EGAF00004169739 fastq.gz 4.3 GB
EGAF00004169740 fastq.gz 2.5 GB
EGAF00004169741 fastq.gz 2.5 GB
EGAF00004169742 fastq.gz 2.5 GB
EGAF00004169743 fastq.gz 2.4 GB
EGAF00004169744 fastq.gz 3.1 GB
EGAF00004169745 fastq.gz 3.1 GB
EGAF00004169746 fastq.gz 3.2 GB
EGAF00004169747 fastq.gz 3.2 GB
EGAF00004169748 fastq.gz 4.5 GB
EGAF00004169749 fastq.gz 4.5 GB
EGAF00004169750 fastq.gz 3.7 GB
EGAF00004169751 fastq.gz 3.7 GB
EGAF00004169752 fastq.gz 4.0 GB
EGAF00004169753 fastq.gz 4.0 GB
EGAF00004169754 fastq.gz 3.7 GB
EGAF00004169755 fastq.gz 3.7 GB
EGAF00004169756 fastq.gz 4.2 GB
EGAF00004169757 fastq.gz 4.1 GB
EGAF00004169758 fastq.gz 3.4 GB
EGAF00004169759 fastq.gz 3.4 GB
EGAF00004169760 fastq.gz 3.4 GB
EGAF00004169761 fastq.gz 3.4 GB
EGAF00004169762 fastq.gz 3.4 GB
EGAF00004169763 fastq.gz 3.4 GB
EGAF00004169764 fastq.gz 3.5 GB
EGAF00004169765 fastq.gz 3.5 GB
EGAF00004169766 fastq.gz 3.5 GB
EGAF00004169767 fastq.gz 3.5 GB
EGAF00004169768 fastq.gz 3.6 GB
EGAF00004169769 fastq.gz 3.6 GB
EGAF00004169770 fastq.gz 3.4 GB
EGAF00004169771 fastq.gz 3.5 GB
EGAF00004169772 fastq.gz 3.4 GB
EGAF00004169773 fastq.gz 3.5 GB
EGAF00004169774 fastq.gz 3.6 GB
EGAF00004169775 fastq.gz 3.6 GB
EGAF00004169776 fastq.gz 3.9 GB
EGAF00004169777 fastq.gz 4.0 GB
EGAF00004169778 fastq.gz 2.8 GB
EGAF00004169779 fastq.gz 2.9 GB
EGAF00004169780 fastq.gz 5.0 GB
EGAF00004169781 fastq.gz 5.0 GB
EGAF00004169782 fastq.gz 3.7 GB
EGAF00004169783 fastq.gz 3.7 GB
EGAF00004169784 fastq.gz 3.9 GB
EGAF00004169785 fastq.gz 4.0 GB
EGAF00004169786 fastq.gz 3.8 GB
EGAF00004169787 fastq.gz 3.8 GB
EGAF00004169788 fastq.gz 3.0 GB
EGAF00004169789 fastq.gz 3.0 GB
EGAF00004169790 fastq.gz 3.6 GB
EGAF00004169791 fastq.gz 3.7 GB
EGAF00004169792 fastq.gz 3.6 GB
EGAF00004169793 fastq.gz 3.6 GB
EGAF00004169794 fastq.gz 3.0 GB
EGAF00004169795 fastq.gz 3.0 GB
EGAF00004169796 fastq.gz 3.5 GB
EGAF00004169797 fastq.gz 3.5 GB
EGAF00004169798 fastq.gz 3.2 GB
EGAF00004169799 fastq.gz 3.3 GB
EGAF00004169800 fastq.gz 2.9 GB
EGAF00004169801 fastq.gz 2.9 GB
EGAF00004169802 fastq.gz 3.2 GB
EGAF00004169803 fastq.gz 3.2 GB
EGAF00004169804 fastq.gz 2.7 GB
EGAF00004169805 fastq.gz 2.8 GB
EGAF00004169806 fastq.gz 2.9 GB
EGAF00004169807 fastq.gz 2.9 GB
EGAF00004169808 fastq.gz 3.1 GB
EGAF00004169809 fastq.gz 3.1 GB
EGAF00004169810 fastq.gz 3.2 GB
EGAF00004169811 fastq.gz 3.3 GB
EGAF00004169812 fastq.gz 2.9 GB
EGAF00004169813 fastq.gz 2.9 GB
EGAF00004169814 fastq.gz 2.9 GB
EGAF00004169815 fastq.gz 2.9 GB
EGAF00004169816 fastq.gz 2.9 GB
EGAF00004169817 fastq.gz 2.9 GB
EGAF00004169818 fastq.gz 2.8 GB
EGAF00004169819 fastq.gz 2.8 GB
EGAF00004169820 fastq.gz 2.8 GB
EGAF00004169821 fastq.gz 2.8 GB
EGAF00004169822 fastq.gz 2.5 GB
EGAF00004169823 fastq.gz 2.5 GB
EGAF00004169824 fastq.gz 2.6 GB
EGAF00004169825 fastq.gz 2.6 GB
EGAF00004169826 fastq.gz 3.1 GB
EGAF00004169827 fastq.gz 3.1 GB
EGAF00004169828 fastq.gz 3.7 GB
EGAF00004169829 fastq.gz 3.7 GB
EGAF00004169830 fastq.gz 3.5 GB
EGAF00004169831 fastq.gz 3.5 GB
EGAF00004169832 fastq.gz 3.3 GB
EGAF00004169833 fastq.gz 3.4 GB
EGAF00004169834 fastq.gz 3.7 GB
EGAF00004169835 fastq.gz 3.7 GB
EGAF00004169836 fastq.gz 3.4 GB
EGAF00004169837 fastq.gz 3.4 GB
EGAF00004169838 fastq.gz 3.0 GB
EGAF00004169839 fastq.gz 3.0 GB
EGAF00004169840 fastq.gz 3.5 GB
EGAF00004169841 fastq.gz 3.5 GB
EGAF00004169842 fastq.gz 3.5 GB
EGAF00004169843 fastq.gz 3.6 GB
EGAF00004169844 fastq.gz 4.0 GB
EGAF00004169845 fastq.gz 4.1 GB
EGAF00004169846 fastq.gz 3.6 GB
EGAF00004169847 fastq.gz 3.7 GB
EGAF00004169848 fastq.gz 3.3 GB
EGAF00004169849 fastq.gz 3.3 GB
EGAF00004169850 fastq.gz 3.5 GB
EGAF00004169851 fastq.gz 3.6 GB
EGAF00004169852 fastq.gz 3.6 GB
EGAF00004169853 fastq.gz 3.6 GB
EGAF00004169854 fastq.gz 4.2 GB
EGAF00004169855 fastq.gz 4.2 GB
EGAF00004169856 fastq.gz 3.2 GB
EGAF00004169857 fastq.gz 3.3 GB
EGAF00004169858 fastq.gz 4.3 GB
EGAF00004169859 fastq.gz 4.3 GB
EGAF00004169860 fastq.gz 4.1 GB
EGAF00004169861 fastq.gz 4.2 GB
EGAF00004169862 fastq.gz 4.7 GB
EGAF00004169863 fastq.gz 4.7 GB
EGAF00004169864 fastq.gz 4.9 GB
EGAF00004169865 fastq.gz 5.0 GB
EGAF00004169866 fastq.gz 3.7 GB
EGAF00004169867 fastq.gz 3.7 GB
EGAF00004169868 fastq.gz 4.3 GB
EGAF00004169869 fastq.gz 4.4 GB
EGAF00004169870 fastq.gz 3.8 GB
EGAF00004169871 fastq.gz 3.8 GB
EGAF00004169872 fastq.gz 4.2 GB
EGAF00004169873 fastq.gz 4.3 GB
EGAF00004169874 fastq.gz 4.2 GB
EGAF00004169875 fastq.gz 4.3 GB
EGAF00004169876 fastq.gz 4.1 GB
EGAF00004169877 fastq.gz 4.2 GB
EGAF00004169878 fastq.gz 4.6 GB
EGAF00004169879 fastq.gz 4.6 GB
EGAF00004169880 fastq.gz 5.6 GB
EGAF00004169881 fastq.gz 5.6 GB
EGAF00004169882 fastq.gz 4.8 GB
EGAF00004169883 fastq.gz 4.9 GB
EGAF00004169884 fastq.gz 3.9 GB
EGAF00004169885 fastq.gz 4.0 GB
EGAF00004169886 fastq.gz 5.4 GB
EGAF00004169887 fastq.gz 5.4 GB
EGAF00004169888 fastq.gz 4.7 GB
EGAF00004169889 fastq.gz 4.8 GB
EGAF00004169890 fastq.gz 4.4 GB
EGAF00004169891 fastq.gz 4.4 GB
EGAF00004169892 fastq.gz 5.7 GB
EGAF00004169893 fastq.gz 5.7 GB
EGAF00004169894 fastq.gz 4.6 GB
EGAF00004169895 fastq.gz 4.6 GB
EGAF00004169896 fastq.gz 4.8 GB
EGAF00004169897 fastq.gz 4.8 GB
EGAF00004169898 fastq.gz 4.5 GB
EGAF00004169899 fastq.gz 4.5 GB
EGAF00004169900 fastq.gz 5.0 GB
EGAF00004169901 fastq.gz 5.0 GB
EGAF00004169902 fastq.gz 4.6 GB
EGAF00004169903 fastq.gz 4.6 GB
EGAF00004169904 fastq.gz 4.0 GB
EGAF00004169905 fastq.gz 4.1 GB
EGAF00004169906 fastq.gz 4.6 GB
EGAF00004169907 fastq.gz 4.6 GB
EGAF00004169908 fastq.gz 4.7 GB
EGAF00004169909 fastq.gz 4.8 GB
EGAF00004169910 fastq.gz 3.5 GB
EGAF00004169911 fastq.gz 3.6 GB
EGAF00004169912 fastq.gz 6.5 GB
EGAF00004169913 fastq.gz 6.5 GB
EGAF00004169914 fastq.gz 4.8 GB
EGAF00004169915 fastq.gz 4.8 GB
EGAF00004169916 fastq.gz 4.5 GB
EGAF00004169917 fastq.gz 4.4 GB
EGAF00004169918 fastq.gz 4.1 GB
EGAF00004169919 fastq.gz 4.2 GB
EGAF00004169920 fastq.gz 4.3 GB
EGAF00004169921 fastq.gz 4.4 GB
EGAF00004169922 fastq.gz 4.6 GB
EGAF00004169923 fastq.gz 4.7 GB
EGAF00004169924 fastq.gz 4.4 GB
EGAF00004169925 fastq.gz 4.4 GB
EGAF00004169926 fastq.gz 5.3 GB
EGAF00004169927 fastq.gz 5.3 GB
EGAF00004169928 fastq.gz 3.8 GB
EGAF00004169929 fastq.gz 3.8 GB
EGAF00004169930 fastq.gz 4.8 GB
EGAF00004169931 fastq.gz 4.8 GB
EGAF00004169932 fastq.gz 4.0 GB
EGAF00004169933 fastq.gz 4.0 GB
EGAF00004169934 fastq.gz 3.7 GB
EGAF00004169935 fastq.gz 3.7 GB
EGAF00004169936 fastq.gz 4.2 GB
EGAF00004169937 fastq.gz 4.2 GB
EGAF00004169938 fastq.gz 3.8 GB
EGAF00004169939 fastq.gz 3.8 GB
EGAF00004169940 fastq.gz 3.9 GB
EGAF00004169941 fastq.gz 3.9 GB
EGAF00004169942 fastq.gz 3.3 GB
EGAF00004169943 fastq.gz 3.2 GB
EGAF00004169944 fastq.gz 3.1 GB
EGAF00004169945 fastq.gz 3.0 GB
EGAF00004169946 fastq.gz 3.7 GB
EGAF00004169947 fastq.gz 3.6 GB
EGAF00004169948 fastq.gz 4.3 GB
EGAF00004169949 fastq.gz 4.3 GB
EGAF00004169950 fastq.gz 4.5 GB
EGAF00004169951 fastq.gz 4.5 GB
EGAF00004169952 fastq.gz 4.8 GB
EGAF00004169953 fastq.gz 4.8 GB
EGAF00004169954 fastq.gz 4.0 GB
EGAF00004169955 fastq.gz 4.0 GB
EGAF00004169956 fastq.gz 4.7 GB
EGAF00004169957 fastq.gz 4.7 GB
EGAF00004169958 fastq.gz 4.5 GB
EGAF00004169959 fastq.gz 4.5 GB
EGAF00004169960 fastq.gz 3.6 GB
EGAF00004169961 fastq.gz 3.6 GB
EGAF00004169962 fastq.gz 4.2 GB
EGAF00004169963 fastq.gz 4.3 GB
EGAF00004169964 fastq.gz 3.2 GB
EGAF00004169965 fastq.gz 3.2 GB
EGAF00004169966 fastq.gz 3.5 GB
EGAF00004169967 fastq.gz 3.5 GB
EGAF00004169968 fastq.gz 3.3 GB
EGAF00004169969 fastq.gz 3.3 GB
EGAF00004169970 fastq.gz 3.4 GB
EGAF00004169971 fastq.gz 3.4 GB
EGAF00004169972 fastq.gz 4.3 GB
EGAF00004169973 fastq.gz 4.4 GB
EGAF00004169974 fastq.gz 5.2 GB
EGAF00004169975 fastq.gz 5.2 GB
EGAF00004169976 fastq.gz 5.0 GB
EGAF00004169977 fastq.gz 5.0 GB
EGAF00004169978 fastq.gz 4.0 GB
EGAF00004169979 fastq.gz 4.0 GB
EGAF00004169980 fastq.gz 3.8 GB
EGAF00004169981 fastq.gz 3.8 GB
EGAF00004169982 fastq.gz 4.2 GB
EGAF00004169983 fastq.gz 4.3 GB
EGAF00004169984 fastq.gz 5.0 GB
EGAF00004169985 fastq.gz 5.0 GB
EGAF00004169986 fastq.gz 4.0 GB
EGAF00004169987 fastq.gz 4.0 GB
EGAF00004169988 fastq.gz 3.7 GB
EGAF00004169989 fastq.gz 3.8 GB
EGAF00004169990 fastq.gz 3.7 GB
EGAF00004169991 fastq.gz 3.8 GB
EGAF00004169992 fastq.gz 4.0 GB
EGAF00004169993 fastq.gz 4.0 GB
EGAF00004169994 fastq.gz 3.6 GB
EGAF00004169995 fastq.gz 3.6 GB
EGAF00004169996 fastq.gz 3.8 GB
EGAF00004169997 fastq.gz 3.9 GB
EGAF00004169998 fastq.gz 2.7 GB
EGAF00004169999 fastq.gz 2.7 GB
EGAF00004170000 fastq.gz 3.0 GB
EGAF00004170001 fastq.gz 3.0 GB
EGAF00004170002 fastq.gz 3.4 GB
EGAF00004170003 fastq.gz 3.3 GB
EGAF00004170004 fastq.gz 3.9 GB
EGAF00004170005 fastq.gz 4.0 GB
EGAF00004170006 fastq.gz 4.4 GB
EGAF00004170007 fastq.gz 4.4 GB
EGAF00004170008 fastq.gz 3.8 GB
EGAF00004170009 fastq.gz 3.9 GB
EGAF00004170010 fastq.gz 3.6 GB
EGAF00004170011 fastq.gz 3.6 GB
296 Files (1.1 TB)