Whole genome sequencing data for Molecular Characterization of ETMRs
This dataset contains whole genome sequencing data from 59 samples. WGS libraries were prepared using the Illumina TruSeq Nano DNA LT Library Prep or TruSeq Nano DNA HT Library Prep Kit following the manufacturer’s instructions. In brief, 100 ng of genomic DNA was fragmented to approximately 350 bp using a Covaris ultrasonicator (Covaris). The fragmented DNA was then end-repaired, size-selected using magnetic beads, extended with an ‘A’ base on the 3′ end and ligated with TruSeq paired-end indexing adapters. Up to four lanes per sample have been sequenced resulting in 222 Fastq files (paired end).
- 59 samples
- DAC: EGAC00001001626
- Technologies: HiSeq X Ten, Illumina HiSeq 2000
Data Access Committee for DKFZ DACO B06x
This document specifies the policy for granting access to the European Genome-phenome Archive (EGA) secure Web based tools for managing data access permissions to the data stored in the EGA database. Access is granted to those Data Access Committee members named in this document Paul Flicek, head of Genes, Genomes and Variation. Conditions of access: The account holder will abide by all current and future policies of the EBI for computer use as well as computer use policies of the European Molecular Biology Laboratory (EMBL), of which the EBI is a part. All EGA specific policies and standard operating procedures (SOPs) must also be followed. All applicable policies will be provided to the authorized users. Method of access: The EBI will create a personal account for the authorized person. The account username and password together with a RSA key provide access to the secure EGA infrastructure. A separate document with detailed guidelines on how to access and use these tools is provided to each account holder. The EGA helpdesk provides training when needed. Review: All individuals access to the EGA user authorization tools will be reviewed annually by Paul Flicek. Any staff changes affecting the authorized person must be provided immediately to Paul Flicek (flicek@ebi.ac.uk). Authorized Data Access Committee user: Dr. Ursula Weber German Cancer Research Center (DKFZ) Foundation under Public Law Im Neuenheimer Feld 580 69120 Heidelberg, Germany u.weber@Dkfz-Heidelberg.de Supervisor of Authorized user: Prof. Dr. Peter Lichter Division of Molecular Genetics German Cancer Research Center (DKFZ) Foundation under Public Law Im Neuenheimer Feld 580 69120 Heidelberg, Germany. Peter.Lichter@Dkfz-Heidelberg.de Prof. Dr. Stefan Pfister Division of Pediatric Neurooncology German Cancer Research Center (DKFZ) Foundation under Public Law Im Neuenheimer Feld 580 69120 Heidelberg, Germany. S.Pfister@dkfz-heidelberg.de
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| Other |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Located in | |
|---|---|---|---|---|
| EGAF00003948256 | fastq.gz | 17.4 GB | ||
| EGAF00003948257 | fastq.gz | 17.9 GB | ||
| EGAF00003948258 | fastq.gz | 21.0 GB | ||
| EGAF00003948259 | fastq.gz | 22.0 GB | ||
| EGAF00003948260 | fastq.gz | 18.8 GB | ||
| EGAF00003948261 | fastq.gz | 19.7 GB | ||
| EGAF00003948262 | fastq.gz | 19.0 GB | ||
| EGAF00003948263 | fastq.gz | 19.3 GB | ||
| EGAF00003948264 | fastq.gz | 18.7 GB | ||
| EGAF00003948265 | fastq.gz | 19.7 GB | ||
| EGAF00003948266 | fastq.gz | 19.3 GB | ||
| EGAF00003948267 | fastq.gz | 19.9 GB | ||
| EGAF00003948268 | fastq.gz | 19.8 GB | ||
| EGAF00003948269 | fastq.gz | 20.4 GB | ||
| EGAF00003948270 | fastq.gz | 19.5 GB | ||
| EGAF00003948271 | fastq.gz | 20.1 GB | ||
| EGAF00003948272 | fastq.gz | 36.2 GB | ||
| EGAF00003948273 | fastq.gz | 43.1 GB | ||
| EGAF00003948274 | fastq.gz | 14.0 GB | ||
| EGAF00003948275 | fastq.gz | 14.6 GB | ||
| EGAF00003948276 | fastq.gz | 18.0 GB | ||
| EGAF00003948277 | fastq.gz | 18.5 GB | ||
| EGAF00003948278 | fastq.gz | 18.1 GB | ||
| EGAF00003948279 | fastq.gz | 18.8 GB | ||
| EGAF00003948280 | fastq.gz | 20.7 GB | ||
| EGAF00003948281 | fastq.gz | 21.5 GB | ||
| EGAF00003948282 | fastq.gz | 19.7 GB | ||
| EGAF00003948283 | fastq.gz | 20.5 GB | ||
| EGAF00003948284 | fastq.gz | 19.9 GB | ||
| EGAF00003948285 | fastq.gz | 20.7 GB | ||
| EGAF00003948286 | fastq.gz | 14.0 GB | ||
| EGAF00003948287 | fastq.gz | 15.2 GB | ||
| EGAF00003948288 | fastq.gz | 14.0 GB | ||
| EGAF00003948289 | fastq.gz | 15.2 GB | ||
| EGAF00003948290 | fastq.gz | 4.1 GB | ||
| EGAF00003948291 | fastq.gz | 4.4 GB | ||
| EGAF00003948292 | fastq.gz | 4.0 GB | ||
| EGAF00003948293 | fastq.gz | 4.3 GB | ||
| EGAF00003948294 | fastq.gz | 39.7 GB | ||
| EGAF00003948295 | fastq.gz | 41.9 GB | ||
| EGAF00003948296 | fastq.gz | 14.6 GB | ||
| EGAF00003948297 | fastq.gz | 15.7 GB | ||
| EGAF00003948298 | fastq.gz | 14.6 GB | ||
| EGAF00003948299 | fastq.gz | 15.7 GB | ||
| EGAF00003948300 | fastq.gz | 18.0 GB | ||
| EGAF00003948301 | fastq.gz | 18.4 GB | ||
| EGAF00003948302 | fastq.gz | 19.4 GB | ||
| EGAF00003948303 | fastq.gz | 20.1 GB | ||
| EGAF00003948304 | fastq.gz | 19.4 GB | ||
| EGAF00003948305 | fastq.gz | 20.0 GB | ||
| EGAF00003948306 | fastq.gz | 19.6 GB | ||
| EGAF00003948307 | fastq.gz | 20.2 GB | ||
| EGAF00003948308 | fastq.gz | 19.6 GB | ||
| EGAF00003948309 | fastq.gz | 19.7 GB | ||
| EGAF00003948310 | fastq.gz | 19.3 GB | ||
| EGAF00003948311 | fastq.gz | 19.7 GB | ||
| EGAF00003948312 | fastq.gz | 17.1 GB | ||
| EGAF00003948313 | fastq.gz | 17.8 GB | ||
| EGAF00003948314 | fastq.gz | 18.6 GB | ||
| EGAF00003948315 | fastq.gz | 19.4 GB | ||
| EGAF00003948316 | fastq.gz | 19.0 GB | ||
| EGAF00003948317 | fastq.gz | 19.6 GB | ||
| EGAF00003948318 | fastq.gz | 17.0 GB | ||
| EGAF00003948319 | fastq.gz | 17.2 GB | ||
| EGAF00003948320 | fastq.gz | 15.5 GB | ||
| EGAF00003948321 | fastq.gz | 16.5 GB | ||
| EGAF00003948322 | fastq.gz | 18.0 GB | ||
| EGAF00003948323 | fastq.gz | 18.9 GB | ||
| EGAF00003948324 | fastq.gz | 12.6 GB | ||
| EGAF00003948325 | fastq.gz | 13.8 GB | ||
| EGAF00003948326 | fastq.gz | 16.7 GB | ||
| EGAF00003948327 | fastq.gz | 17.2 GB | ||
| EGAF00003948328 | fastq.gz | 16.4 GB | ||
| EGAF00003948329 | fastq.gz | 16.9 GB | ||
| EGAF00003948330 | fastq.gz | 16.7 GB | ||
| EGAF00003948331 | fastq.gz | 17.0 GB | ||
| EGAF00003948332 | fastq.gz | 14.5 GB | ||
| EGAF00003948333 | fastq.gz | 15.3 GB | ||
| EGAF00003948334 | fastq.gz | 24.6 GB | ||
| EGAF00003948335 | fastq.gz | 25.6 GB | ||
| EGAF00003948336 | fastq.gz | 19.1 GB | ||
| EGAF00003948337 | fastq.gz | 17.0 GB | ||
| EGAF00003948338 | fastq.gz | 16.2 GB | ||
| EGAF00003948339 | fastq.gz | 8.9 GB | ||
| EGAF00003948340 | fastq.gz | 18.2 GB | ||
| EGAF00003948341 | fastq.gz | 18.4 GB | ||
| EGAF00003948342 | fastq.gz | 41.2 GB | ||
| EGAF00003948343 | fastq.gz | 45.7 GB | ||
| EGAF00003948344 | fastq.gz | 41.8 GB | ||
| EGAF00003948345 | fastq.gz | 44.6 GB | ||
| EGAF00003948346 | fastq.gz | 39.7 GB | ||
| EGAF00003948347 | fastq.gz | 43.7 GB | ||
| EGAF00003948348 | fastq.gz | 36.9 GB | ||
| EGAF00003948349 | fastq.gz | 44.4 GB | ||
| EGAF00003948350 | fastq.gz | 35.2 GB | ||
| EGAF00003948351 | fastq.gz | 41.5 GB | ||
| EGAF00003948352 | fastq.gz | 43.2 GB | ||
| EGAF00003948353 | fastq.gz | 50.2 GB | ||
| EGAF00003948354 | fastq.gz | 40.0 GB | ||
| EGAF00003948355 | fastq.gz | 43.9 GB | ||
| EGAF00003948356 | fastq.gz | 34.0 GB | ||
| EGAF00003948357 | fastq.gz | 39.3 GB | ||
| EGAF00003948358 | fastq.gz | 35.1 GB | ||
| EGAF00003948359 | fastq.gz | 41.1 GB | ||
| EGAF00003948360 | fastq.gz | 36.8 GB | ||
| EGAF00003948361 | fastq.gz | 44.4 GB | ||
| EGAF00003948362 | fastq.gz | 36.1 GB | ||
| EGAF00003948363 | fastq.gz | 38.7 GB | ||
| EGAF00003948364 | fastq.gz | 15.9 GB | ||
| EGAF00003948365 | fastq.gz | 16.5 GB | ||
| EGAF00003948366 | fastq.gz | 16.0 GB | ||
| EGAF00003948367 | fastq.gz | 16.7 GB | ||
| EGAF00003948368 | fastq.gz | 15.3 GB | ||
| EGAF00003948369 | fastq.gz | 15.6 GB | ||
| EGAF00003948370 | fastq.gz | 41.9 GB | ||
| EGAF00003948371 | fastq.gz | 48.8 GB | ||
| EGAF00003948372 | fastq.gz | 36.3 GB | ||
| EGAF00003948373 | fastq.gz | 43.9 GB | ||
| EGAF00003948374 | fastq.gz | 36.7 GB | ||
| EGAF00003948375 | fastq.gz | 40.3 GB | ||
| EGAF00003948376 | fastq.gz | 36.6 GB | ||
| EGAF00003948377 | fastq.gz | 40.6 GB | ||
| EGAF00003948378 | fastq.gz | 16.4 GB | ||
| EGAF00003948379 | fastq.gz | 16.5 GB | ||
| EGAF00003948380 | fastq.gz | 15.7 GB | ||
| EGAF00003948381 | fastq.gz | 15.6 GB | ||
| EGAF00003948382 | fastq.gz | 15.2 GB | ||
| EGAF00003948383 | fastq.gz | 15.8 GB | ||
| EGAF00003948384 | fastq.gz | 36.1 GB | ||
| EGAF00003948385 | fastq.gz | 43.1 GB | ||
| EGAF00003948386 | fastq.gz | 19.8 GB | ||
| EGAF00003948387 | fastq.gz | 20.6 GB | ||
| EGAF00003948388 | fastq.gz | 20.3 GB | ||
| EGAF00003948389 | fastq.gz | 21.2 GB | ||
| EGAF00003948390 | fastq.gz | 17.7 GB | ||
| EGAF00003948391 | fastq.gz | 18.5 GB | ||
| EGAF00003948392 | fastq.gz | 18.6 GB | ||
| EGAF00003948393 | fastq.gz | 19.5 GB | ||
| EGAF00003948394 | fastq.gz | 17.8 GB | ||
| EGAF00003948395 | fastq.gz | 18.6 GB | ||
| EGAF00003948396 | fastq.gz | 18.4 GB | ||
| EGAF00003948397 | fastq.gz | 19.1 GB | ||
| EGAF00003948398 | fastq.gz | 37.9 GB | ||
| EGAF00003948399 | fastq.gz | 41.9 GB | ||
| EGAF00003948400 | fastq.gz | 20.0 GB | ||
| EGAF00003948401 | fastq.gz | 20.1 GB | ||
| EGAF00003948402 | fastq.gz | 17.7 GB | ||
| EGAF00003948403 | fastq.gz | 18.4 GB | ||
| EGAF00003948404 | fastq.gz | 17.7 GB | ||
| EGAF00003948405 | fastq.gz | 18.4 GB | ||
| EGAF00003948406 | fastq.gz | 18.2 GB | ||
| EGAF00003948407 | fastq.gz | 18.9 GB | ||
| EGAF00003948408 | fastq.gz | 17.9 GB | ||
| EGAF00003948409 | fastq.gz | 19.2 GB | ||
| EGAF00003948410 | fastq.gz | 14.6 GB | ||
| EGAF00003948411 | fastq.gz | 15.1 GB | ||
| EGAF00003948412 | fastq.gz | 14.5 GB | ||
| EGAF00003948413 | fastq.gz | 15.0 GB | ||
| EGAF00003948414 | fastq.gz | 14.4 GB | ||
| EGAF00003948415 | fastq.gz | 15.0 GB | ||
| EGAF00003948416 | fastq.gz | 10.3 GB | ||
| EGAF00003948417 | fastq.gz | 10.7 GB | ||
| EGAF00003948418 | fastq.gz | 16.6 GB | ||
| EGAF00003948419 | fastq.gz | 17.4 GB | ||
| EGAF00003948420 | fastq.gz | 18.5 GB | ||
| EGAF00003948421 | fastq.gz | 19.3 GB | ||
| EGAF00003948422 | fastq.gz | 18.5 GB | ||
| EGAF00003948423 | fastq.gz | 19.3 GB | ||
| EGAF00003948424 | fastq.gz | 16.4 GB | ||
| EGAF00003948425 | fastq.gz | 17.1 GB | ||
| EGAF00003948426 | fastq.gz | 18.5 GB | ||
| EGAF00003948427 | fastq.gz | 19.2 GB | ||
| EGAF00003948428 | fastq.gz | 18.8 GB | ||
| EGAF00003948429 | fastq.gz | 19.5 GB | ||
| EGAF00003948430 | fastq.gz | 12.9 GB | ||
| EGAF00003948431 | fastq.gz | 13.0 GB | ||
| EGAF00003948432 | fastq.gz | 13.6 GB | ||
| EGAF00003948433 | fastq.gz | 13.3 GB | ||
| EGAF00003948434 | fastq.gz | 14.1 GB | ||
| EGAF00003948435 | fastq.gz | 13.5 GB | ||
| EGAF00003948436 | fastq.gz | 17.1 GB | ||
| EGAF00003948437 | fastq.gz | 17.9 GB | ||
| EGAF00003948438 | fastq.gz | 17.7 GB | ||
| EGAF00003948439 | fastq.gz | 18.0 GB | ||
| EGAF00003948440 | fastq.gz | 17.9 GB | ||
| EGAF00003948441 | fastq.gz | 18.6 GB | ||
| EGAF00003948442 | fastq.gz | 18.3 GB | ||
| EGAF00003948443 | fastq.gz | 19.0 GB | ||
| EGAF00003948444 | fastq.gz | 42.7 GB | ||
| EGAF00003948445 | fastq.gz | 46.1 GB | ||
| EGAF00003948446 | fastq.gz | 9.8 MB | ||
| EGAF00003948447 | fastq.gz | 45.3 GB | ||
| EGAF00003948448 | fastq.gz | 40.4 GB | ||
| EGAF00003948449 | fastq.gz | 45.5 GB | ||
| EGAF00003948450 | fastq.gz | 37.1 GB | ||
| EGAF00003948451 | fastq.gz | 41.0 GB | ||
| EGAF00003948452 | fastq.gz | 40.7 GB | ||
| EGAF00003948453 | fastq.gz | 46.1 GB | ||
| EGAF00003948454 | fastq.gz | 41.4 GB | ||
| EGAF00003948455 | fastq.gz | 48.2 GB | ||
| EGAF00003948456 | fastq.gz | 40.8 GB | ||
| EGAF00003948457 | fastq.gz | 46.0 GB | ||
| EGAF00003948458 | fastq.gz | 39.4 GB | ||
| EGAF00003948459 | fastq.gz | 43.5 GB | ||
| EGAF00003948460 | fastq.gz | 15.8 GB | ||
| EGAF00003948461 | fastq.gz | 16.4 GB | ||
| EGAF00003948462 | fastq.gz | 15.3 GB | ||
| EGAF00003948463 | fastq.gz | 16.1 GB | ||
| EGAF00003948464 | fastq.gz | 15.7 GB | ||
| EGAF00003948465 | fastq.gz | 16.4 GB | ||
| EGAF00003948466 | fastq.gz | 42.7 GB | ||
| EGAF00003948467 | fastq.gz | 50.2 GB | ||
| EGAF00003948468 | fastq.gz | 36.6 GB | ||
| EGAF00003948469 | fastq.gz | 43.3 GB | ||
| EGAF00003948470 | fastq.gz | 37.3 GB | ||
| EGAF00003948471 | fastq.gz | 41.5 GB | ||
| EGAF00003948472 | fastq.gz | 36.1 GB | ||
| EGAF00003948473 | fastq.gz | 40.4 GB | ||
| EGAF00003948474 | fastq.gz | 37.3 GB | ||
| EGAF00003948475 | fastq.gz | 41.6 GB | ||
| 220 Files (5.3 TB) | ||||