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Mate Pair Sequencing data for Molecular Characterization of ETMRs

This dataset contains Mate Pair Sequencing data from 15 samples from 13 patients. Mate pair DNA library preparation was carried out using the Illumina MP v.2 reagents and protocol. In brief, fragmentation of genomic DNA was performed using a Hydroshear device to an insert size of 4.5 kb followed by sequencing with Illumina HiSeq 2000 instruments resulting in 30 Fastq files (paired end).

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Data Access Committee for DKFZ DACO B06x

This document specifies the policy for granting access to the European Genome-phenome Archive (EGA) secure Web based tools for managing data access permissions to the data stored in the EGA database. Access is granted to those Data Access Committee members named in this document Paul Flicek, head of Genes, Genomes and Variation. Conditions of access: The account holder will abide by all current and future policies of the EBI for computer use as well as computer use policies of the European Molecular Biology Laboratory (EMBL), of which the EBI is a part. All EGA specific policies and standard operating procedures (SOPs) must also be followed. All applicable policies will be provided to the authorized users. Method of access: The EBI will create a personal account for the authorized person. The account username and password together with a RSA key provide access to the secure EGA infrastructure. A separate document with detailed guidelines on how to access and use these tools is provided to each account holder. The EGA helpdesk provides training when needed. Review: All individuals access to the EGA user authorization tools will be reviewed annually by Paul Flicek. Any staff changes affecting the authorized person must be provided immediately to Paul Flicek (flicek@ebi.ac.uk). Authorized Data Access Committee user: Dr. Ursula Weber German Cancer Research Center (DKFZ) Foundation under Public Law Im Neuenheimer Feld 580 69120 Heidelberg, Germany u.weber@Dkfz-Heidelberg.de Supervisor of Authorized user: Prof. Dr. Peter Lichter Division of Molecular Genetics German Cancer Research Center (DKFZ) Foundation under Public Law Im Neuenheimer Feld 580 69120 Heidelberg, Germany. Peter.Lichter@Dkfz-Heidelberg.de Prof. Dr. Stefan Pfister Division of Pediatric Neurooncology German Cancer Research Center (DKFZ) Foundation under Public Law Im Neuenheimer Feld 580 69120 Heidelberg, Germany. S.Pfister@dkfz-heidelberg.de

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001003256 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00004040558 txt.gz 1.6 GB
EGAF00004040559 txt.gz 1.6 GB
EGAF00004040560 txt.gz 2.2 GB
EGAF00004040561 txt.gz 2.3 GB
EGAF00004040562 txt.gz 2.1 GB
EGAF00004040563 txt.gz 2.1 GB
EGAF00004040564 txt.gz 2.0 GB
EGAF00004040565 txt.gz 2.0 GB
EGAF00004040566 txt.gz 2.0 GB
EGAF00004040567 txt.gz 2.0 GB
EGAF00004040568 txt.gz 2.1 GB
EGAF00004040569 txt.gz 2.1 GB
EGAF00004040570 txt.gz 2.2 GB
EGAF00004040571 txt.gz 2.3 GB
EGAF00004040572 txt.gz 2.2 GB
EGAF00004040573 txt.gz 2.3 GB
EGAF00004040574 txt.gz 2.1 GB
EGAF00004040575 txt.gz 2.2 GB
EGAF00004040576 txt.gz 1.9 GB
EGAF00004040577 txt.gz 2.0 GB
EGAF00004040578 txt.gz 2.3 GB
EGAF00004040579 txt.gz 2.4 GB
EGAF00004040580 txt.gz 2.1 GB
EGAF00004040581 txt.gz 2.2 GB
EGAF00004040582 txt.gz 2.2 GB
EGAF00004040583 txt.gz 2.2 GB
EGAF00004040584 txt.gz 2.3 GB
EGAF00004040585 txt.gz 2.4 GB
EGAF00004040586 txt.gz 2.3 GB
EGAF00004040587 txt.gz 2.3 GB
30 Files (64.0 GB)