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Whole-exome sequencing and microRNA profiling predicted relapse risk of stage I lung adenocarcinomas

This dataset contains BAM files for whole exome-sequencing of stage I lung adenocarcinomas from Asian patients. In total, there are 113 patients and 262 samples, including 113 tumor samples, 113 adjacent normal samples and 36 buffy coat samples.

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MSCTLCC data access agreement

DATA ACCESS AGREEMENT These terms and conditions govern access to the managed access datasets (details of which are set out in Appendix I) to which the User Institution has requested access. The User Institution agrees to be bound by these terms and conditions. Definitions Data refers to any and all human genetic, epigenetic or phenotype data obtained from through this agreement. Data Producers refer to the Mutational Study Committee of a Taiwanese Lung Cancer Cohort (hereinafter referred to as MSCTLCC) and the collaborators listed in Appendix I. Research Participant refers to an individual whose data form part of these Data. User Institution(s) refers to the institution that has requested access to these Data. Project refers to the project for which the User Institution has requested access to these Data. A description of the Project is set out in Appendix II. User refers to the principal investigator for the Project. Authorized Personnel refers to the individuals at the User Institution to whom MSCTLCC grants access to the Data. This includes the User, the individuals listed in Appendix II and any other individuals for whom the User Institution subsequently requests access to the Data. Details of the initial Authorized Personnel are set out in Appendix II. External Collaborator refers to a collaborator of the User, working for an institution other than the User Institution. Research Purposes shall mean research that is seeking to advance the understanding of genetics and genomics, including the treatment of disorders, and work on statistical methods that may be applied to such research. Publication(s) refers, without limitation, to any and all articles published in print journals, electronic journals, reviews, books, posters and other written and verbal presentations of research. 1. The User Institution agrees to only use these Data for the purpose of the Project (described in Appendix II) and only for Research Purposes. The User Institution further agrees that it will only use these Data for Research Purposes which are within the limitations (if any) set out in Appendix I. 2. The User Institution agrees to preserve, at all times, the confidentiality of these Data. In particular, it undertakes not to use, or attempt to use these Data to compromise or otherwise infringe the confidentiality of information on Research Participants. Without prejudice to the generality of the foregoing, the User Institution agrees to use at least the measures set out in Appendix I to protect these Data. 3. The User Institution agrees to protect the confidentiality of Research Participants in any research papers or publications that they prepare by taking all reasonable care to limit the possibility of identification. 4. The User Institution agrees not to link or combine these Data to other information or archived data available in a way that could re-identify the Research Participants, even if access to that data has been formally granted to the User Institution or is freely available without restriction. 5. The User Institution agrees only to transfer or disclose these Data, in whole or part, or any material derived from these Data, to the Authorized Personnel. Should the User Institution wish to share these Data with an External Collaborator, the External Collaborator must complete a separate application for access to these Data. 6. The User Institution agrees that the Data Producers, and all other parties involved in the creation, funding or protection of these Data: a) make no warranty or representation, express or implied as to the accuracy, quality or comprehensiveness of these Data; b) exclude to the fullest extent permitted by law all liability for actions, claims, proceedings, demands, losses (including but not limited to loss of profit), costs, awards damages and payments made by the Recipient that may arise (whether directly or indirectly) in any way whatsoever from the Recipient’s use of these Data or from the unavailability of, or break in access to, these Data for whatever reason and; c) bear no responsibility for the further analysis or interpretation of these Data. 7. The User Institution agrees to follow the Fort Lauderdale Guidelines (http://www.wellcome.ac.uk/stellent/groups/corporatesite/@policy_communications/documents/web_document/wtd003207.pdf ) and the Toronto Statement (http://www.nature.com/nature/journal/v461/n7261/full/461168a.html). This includes but is not limited to recognizing the contribution of the Data Producers and including a proper acknowledgement in all reports or publications resulting from the use of these Data. 8. The User Institution agrees to follow the Publication Policy in Appendix III. This includes respecting the moratorium period for the Data Producers to publish the first peer-reviewed report describing and analyzing these Data. 9. The User Institution agrees not to make intellectual property claims on these Data and not to use intellectual property protection in ways that would prevent or block access to, or use of, any element of these Data, or conclusion drawn directly from these Data. 10. The User Institution can elect to perform further research that would add intellectual and resource capital to these data and decide to obtain intellectual property rights on these downstream discoveries. In this case, the User Institution agrees to implement licensing policies that will not obstruct further research and to follow the U.S. National Institutes of Health Best Practices for the Licensing of Genomic Inventions (2005) (https://www.icgc.org/files/daco/NIH_BestPracticesLicensingGenomicInventions_2005_en.pdf ) in conformity with the Organisation for Economic Co-operation and Development Guidelines for the Licensing of the Genetic Inventions (2006) (http://www.oecd.org/science/biotech/36198812.pdf ). 11. The User Institution agrees to destroy/discard the Data held, once it is no longer used for the Project, unless obliged to retain the data for archival purposes in conformity with audit or legal requirements. 12. The User Institution will notify MSCTLCC within 30 days of any changes or departures of Authorized Personnel. 13. The User Institution will notify MSCTLCC prior to any significant changes to the protocol for the Project. 14. The User Institution will notify MSCTLCC as soon as it becomes aware of a breach of the terms or conditions of this agreement. 15. MSCTLCC may terminate this agreement by written notice to the User Institution. If this agreement terminates for any reason, the User Institution will be required to destroy any Data held, including copies and backup copies. This clause does not prevent the User Institution from retaining these data for archival purpose in conformity with audit or legal requirements. 16. The User Institution accepts that it may be necessary for the Data Producers to alter the terms of this agreement from time to time. As an example, this may include specific provisions relating to the Data required by Data Producers other than MSCTLCC. In the event that changes are required, the Data Producers or their appointed agent will contact the User Institution to inform it of the changes and the User Institution may elect to accept the changes or terminate the agreement. 17. If requested, the User Institution will allow data security and management documentation to be inspected to verify that it is complying with the terms of this agreement. 18. The User Institution agrees to distribute a copy of these terms to the Authorized Personnel. The User Institution will procure that the Authorized Personnel comply with the terms of this agreement. 19. The User Institution accepts that the Data is protected by and subject to international laws, including but not limited to the UK Data Protection Act 1998, and that The User Institution are responsible for ensuring compliance with any such applicable law. The Data Producers reserve the right to request and inspect data security and management documentation to ensure the adequacy of data protection measures in countries that have no national laws comparable to that which pertain in the EAA. 20. This agreement (and any dispute, controversy, proceedings or claim of whatever nature arising out of this agreement or its formation) shall be construed, interpreted and governed by the laws of England and Wales and shall be subject to the non-exclusive jurisdiction of the English courts.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00003948898 bam 18.4 GB
EGAF00003948899 bam 19.0 GB
EGAF00003948900 bam 18.4 GB
EGAF00003948901 bam 30.4 GB
EGAF00003948902 bam 21.5 GB
EGAF00003948903 bam 14.9 GB
EGAF00003948904 bam 16.1 GB
EGAF00003948905 bam 23.8 GB
EGAF00003948906 bam 26.8 GB
EGAF00003948907 bam 11.7 GB
EGAF00003948908 bam 17.2 GB
EGAF00003948909 bam 25.8 GB
EGAF00003948910 bam 15.2 GB
EGAF00003948911 bam 17.2 GB
EGAF00003948912 bam 24.1 GB
EGAF00003948913 bam 17.7 GB
EGAF00003948914 bam 19.4 GB
EGAF00003948915 bam 20.7 GB
EGAF00003948916 bam 17.7 GB
EGAF00003948917 bam 17.9 GB
EGAF00003948918 bam 23.8 GB
EGAF00003948919 bam 24.1 GB
EGAF00003948920 bam 18.1 GB
EGAF00003948921 bam 26.3 GB
EGAF00003948922 bam 27.3 GB
EGAF00003948923 bam 24.4 GB
EGAF00003948924 bam 19.8 GB
EGAF00003948925 bam 21.9 GB
EGAF00003948926 bam 21.5 GB
EGAF00003948927 bam 18.6 GB
EGAF00003948928 bam 15.5 GB
EGAF00003948929 bam 18.9 GB
EGAF00003948930 bam 30.4 GB
EGAF00003948931 bam 16.9 GB
EGAF00003948932 bam 24.0 GB
EGAF00003948933 bam 19.5 GB
EGAF00003948934 bam 20.6 GB
EGAF00003948935 bam 14.9 GB
EGAF00003948936 bam 14.0 GB
EGAF00003948937 bam 20.9 GB
EGAF00003948938 bam 19.6 GB
EGAF00003948939 bam 20.8 GB
EGAF00003948940 bam 22.4 GB
EGAF00003948941 bam 17.9 GB
EGAF00003948942 bam 16.6 GB
EGAF00003948943 bam 20.5 GB
EGAF00003948944 bam 23.9 GB
EGAF00003948945 bam 17.3 GB
EGAF00003948946 bam 13.4 GB
EGAF00003948947 bam 19.1 GB
EGAF00003948948 bam 19.5 GB
EGAF00003948949 bam 27.2 GB
EGAF00003948950 bam 23.3 GB
EGAF00003948951 bam 14.3 GB
EGAF00003948952 bam 32.4 GB
EGAF00003948953 bam 12.0 GB
EGAF00003948954 bam 14.8 GB
EGAF00003948955 bam 22.5 GB
EGAF00003948956 bam 22.0 GB
EGAF00003948957 bam 16.3 GB
EGAF00003948958 bam 13.3 GB
EGAF00003948959 bam 23.1 GB
EGAF00003948960 bam 25.0 GB
EGAF00003948961 bam 29.0 GB
EGAF00003948962 bam 29.9 GB
EGAF00003948963 bam 15.7 GB
EGAF00003948964 bam 23.4 GB
EGAF00003948965 bam 21.0 GB
EGAF00003948966 bam 28.8 GB
EGAF00003948967 bam 8.0 GB
EGAF00003948968 bam 17.1 GB
EGAF00003948969 bam 11.6 GB
EGAF00003948970 bam 21.1 GB
EGAF00003948971 bam 17.4 GB
EGAF00003948972 bam 21.1 GB
EGAF00003948973 bam 21.5 GB
EGAF00003948974 bam 17.8 GB
EGAF00003948975 bam 35.2 GB
EGAF00003948976 bam 34.0 GB
EGAF00003948977 bam 17.0 GB
EGAF00003948978 bam 25.1 GB
EGAF00003948979 bam 14.9 GB
EGAF00003948980 bam 25.9 GB
EGAF00003948981 bam 26.1 GB
EGAF00003948982 bam 17.0 GB
EGAF00003948983 bam 19.4 GB
EGAF00003948984 bam 13.7 GB
EGAF00003948985 bam 12.7 GB
EGAF00003948986 bam 16.6 GB
EGAF00003948987 bam 26.1 GB
EGAF00003948988 bam 27.9 GB
EGAF00003948989 bam 26.4 GB
EGAF00003948990 bam 33.2 GB
EGAF00003948991 bam 29.6 GB
EGAF00003948992 bam 37.8 GB
EGAF00003948993 bam 43.5 GB
EGAF00003948994 bam 9.1 GB
EGAF00003948995 bam 30.2 GB
EGAF00003948996 bam 33.1 GB
EGAF00003948997 bam 24.2 GB
EGAF00003948998 bam 21.0 GB
EGAF00003948999 bam 23.4 GB
EGAF00003949000 bam 18.6 GB
EGAF00003949001 bam 17.5 GB
EGAF00003949002 bam 21.9 GB
EGAF00003949003 bam 16.5 GB
EGAF00003949004 bam 21.3 GB
EGAF00003949005 bam 26.1 GB
EGAF00003949006 bam 21.9 GB
EGAF00003949007 bam 23.0 GB
EGAF00003949008 bam 27.8 GB
EGAF00003949009 bam 17.0 GB
EGAF00003949010 bam 20.8 GB
EGAF00003949011 bam 33.0 GB
EGAF00003949012 bam 15.6 GB
EGAF00003949013 bam 15.6 GB
EGAF00003949014 bam 19.3 GB
EGAF00003949015 bam 21.9 GB
EGAF00003949016 bam 22.2 GB
EGAF00003949017 bam 14.2 GB
EGAF00003949018 bam 14.5 GB
EGAF00003949019 bam 22.2 GB
EGAF00003949020 bam 20.0 GB
EGAF00003949021 bam 16.4 GB
EGAF00003949022 bam 20.5 GB
EGAF00003949023 bam 19.8 GB
EGAF00003949024 bam 24.3 GB
EGAF00003949025 bam 20.8 GB
EGAF00003949026 bam 20.5 GB
EGAF00003949027 bam 17.6 GB
EGAF00003949028 bam 21.3 GB
EGAF00003949029 bam 31.4 GB
EGAF00003949030 bam 28.6 GB
EGAF00003949031 bam 21.9 GB
EGAF00003949032 bam 22.3 GB
EGAF00003949033 bam 25.0 GB
EGAF00003949034 bam 23.3 GB
EGAF00003949035 bam 20.7 GB
EGAF00003949036 bam 22.9 GB
EGAF00003949037 bam 20.9 GB
EGAF00003949038 bam 15.4 GB
EGAF00003949039 bam 19.1 GB
EGAF00003949040 bam 16.4 GB
EGAF00003949041 bam 20.3 GB
EGAF00003949042 bam 40.4 GB
EGAF00003949043 bam 40.9 GB
EGAF00003949044 bam 24.0 GB
EGAF00003949045 bam 25.6 GB
EGAF00003949046 bam 13.6 GB
EGAF00003949047 bam 35.5 GB
EGAF00003949048 bam 41.7 GB
EGAF00003949049 bam 20.1 GB
EGAF00003949050 bam 22.3 GB
EGAF00003949051 bam 33.0 GB
EGAF00003949052 bam 30.6 GB
EGAF00003949053 bam 16.1 GB
EGAF00003949054 bam 17.1 GB
EGAF00003949055 bam 18.9 GB
EGAF00003949056 bam 29.3 GB
EGAF00003949057 bam 30.3 GB
EGAF00003949058 bam 31.4 GB
EGAF00003949059 bam 9.9 GB
EGAF00003949060 bam 14.7 GB
EGAF00003949061 bam 16.1 GB
EGAF00003949062 bam 14.3 GB
EGAF00003949063 bam 15.6 GB
EGAF00003949064 bam 13.2 GB
EGAF00003949065 bam 13.5 GB
EGAF00003949066 bam 22.5 GB
EGAF00003949067 bam 18.7 GB
EGAF00003949068 bam 21.6 GB
EGAF00003949069 bam 23.5 GB
EGAF00003949070 bam 14.8 GB
EGAF00003949071 bam 31.0 GB
EGAF00003949072 bam 31.1 GB
EGAF00003949073 bam 31.0 GB
EGAF00003949074 bam 18.7 GB
EGAF00003949075 bam 13.7 GB
EGAF00003949076 bam 14.9 GB
EGAF00003949077 bam 14.3 GB
EGAF00003949078 bam 12.9 GB
EGAF00003949079 bam 17.6 GB
EGAF00003949080 bam 16.3 GB
EGAF00003949081 bam 16.6 GB
EGAF00003949082 bam 14.4 GB
EGAF00003949083 bam 15.3 GB
EGAF00003949084 bam 20.0 GB
EGAF00003949085 bam 33.5 GB
EGAF00003949086 bam 42.2 GB
EGAF00003949087 bam 25.2 GB
EGAF00003949088 bam 25.3 GB
EGAF00003949089 bam 22.0 GB
EGAF00003949090 bam 21.2 GB
EGAF00003949091 bam 24.9 GB
EGAF00003949092 bam 22.3 GB
EGAF00003949093 bam 16.7 GB
EGAF00003949094 bam 21.8 GB
EGAF00003949095 bam 11.5 GB
EGAF00003949096 bam 13.7 GB
EGAF00003949097 bam 30.2 GB
EGAF00003949098 bam 21.7 GB
EGAF00003949099 bam 18.6 GB
EGAF00003949100 bam 33.4 GB
EGAF00003949101 bam 16.8 GB
EGAF00003949102 bam 24.1 GB
EGAF00003949103 bam 27.8 GB
EGAF00003949104 bam 21.7 GB
EGAF00003949105 bam 28.3 GB
EGAF00003949106 bam 27.7 GB
EGAF00003949107 bam 20.4 GB
EGAF00003949108 bam 20.6 GB
EGAF00003949109 bam 30.8 GB
EGAF00003949110 bam 22.8 GB
EGAF00003949111 bam 18.4 GB
EGAF00003949112 bam 20.0 GB
EGAF00003949113 bam 19.4 GB
EGAF00003949114 bam 28.4 GB
EGAF00003949115 bam 21.0 GB
EGAF00003949116 bam 18.3 GB
EGAF00003949117 bam 20.3 GB
EGAF00003949118 bam 22.3 GB
EGAF00003949119 bam 19.2 GB
EGAF00003949120 bam 18.5 GB
EGAF00003949121 bam 29.3 GB
EGAF00003949122 bam 18.0 GB
EGAF00003949123 bam 23.7 GB
EGAF00003949124 bam 25.8 GB
EGAF00003949125 bam 22.3 GB
EGAF00003949126 bam 26.5 GB
EGAF00003949127 bam 24.9 GB
EGAF00003949128 bam 25.7 GB
EGAF00003949129 bam 33.3 GB
EGAF00003949130 bam 23.5 GB
EGAF00003949131 bam 23.0 GB
EGAF00003949132 bam 28.8 GB
EGAF00003949133 bam 19.0 GB
EGAF00003949134 bam 10.3 GB
EGAF00003949135 bam 20.8 GB
EGAF00003949136 bam 22.2 GB
EGAF00003949137 bam 27.5 GB
EGAF00003949138 bam 30.7 GB
EGAF00003949139 bam 14.1 GB
EGAF00003949140 bam 18.4 GB
EGAF00003949141 bam 25.2 GB
EGAF00003949142 bam 21.6 GB
EGAF00003949143 bam 21.7 GB
EGAF00003949144 bam 23.6 GB
EGAF00003949145 bam 23.4 GB
EGAF00003949146 bam 18.1 GB
EGAF00003949147 bam 15.3 GB
EGAF00003949148 bam 26.2 GB
EGAF00003949149 bam 22.5 GB
EGAF00003949150 bam 26.4 GB
EGAF00003949151 bam 23.6 GB
EGAF00003949152 bam 16.6 GB
EGAF00003949153 bam 24.4 GB
EGAF00003949154 bam 19.0 GB
EGAF00003949155 bam 21.1 GB
EGAF00003949156 bam 32.2 GB
EGAF00003949157 bam 20.4 GB
EGAF00003949158 bam 28.3 GB
EGAF00003949159 bam 29.3 GB
262 Files (5.7 TB)