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Whole-exome sequencing and microRNA profiling predicted relapse risk of stage I lung adenocarcinomas

This dataset contains BAM files for RNA-sequencing of stage I lung adenocarcinomas from Asian patients. In total, there are 107 patients and 107 tumor samples.

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MSCTLCC data access agreement

DATA ACCESS AGREEMENT These terms and conditions govern access to the managed access datasets (details of which are set out in Appendix I) to which the User Institution has requested access. The User Institution agrees to be bound by these terms and conditions. Definitions Data refers to any and all human genetic, epigenetic or phenotype data obtained from through this agreement. Data Producers refer to the Mutational Study Committee of a Taiwanese Lung Cancer Cohort (hereinafter referred to as MSCTLCC) and the collaborators listed in Appendix I. Research Participant refers to an individual whose data form part of these Data. User Institution(s) refers to the institution that has requested access to these Data. Project refers to the project for which the User Institution has requested access to these Data. A description of the Project is set out in Appendix II. User refers to the principal investigator for the Project. Authorized Personnel refers to the individuals at the User Institution to whom MSCTLCC grants access to the Data. This includes the User, the individuals listed in Appendix II and any other individuals for whom the User Institution subsequently requests access to the Data. Details of the initial Authorized Personnel are set out in Appendix II. External Collaborator refers to a collaborator of the User, working for an institution other than the User Institution. Research Purposes shall mean research that is seeking to advance the understanding of genetics and genomics, including the treatment of disorders, and work on statistical methods that may be applied to such research. Publication(s) refers, without limitation, to any and all articles published in print journals, electronic journals, reviews, books, posters and other written and verbal presentations of research. 1. The User Institution agrees to only use these Data for the purpose of the Project (described in Appendix II) and only for Research Purposes. The User Institution further agrees that it will only use these Data for Research Purposes which are within the limitations (if any) set out in Appendix I. 2. The User Institution agrees to preserve, at all times, the confidentiality of these Data. In particular, it undertakes not to use, or attempt to use these Data to compromise or otherwise infringe the confidentiality of information on Research Participants. Without prejudice to the generality of the foregoing, the User Institution agrees to use at least the measures set out in Appendix I to protect these Data. 3. The User Institution agrees to protect the confidentiality of Research Participants in any research papers or publications that they prepare by taking all reasonable care to limit the possibility of identification. 4. The User Institution agrees not to link or combine these Data to other information or archived data available in a way that could re-identify the Research Participants, even if access to that data has been formally granted to the User Institution or is freely available without restriction. 5. The User Institution agrees only to transfer or disclose these Data, in whole or part, or any material derived from these Data, to the Authorized Personnel. Should the User Institution wish to share these Data with an External Collaborator, the External Collaborator must complete a separate application for access to these Data. 6. The User Institution agrees that the Data Producers, and all other parties involved in the creation, funding or protection of these Data: a) make no warranty or representation, express or implied as to the accuracy, quality or comprehensiveness of these Data; b) exclude to the fullest extent permitted by law all liability for actions, claims, proceedings, demands, losses (including but not limited to loss of profit), costs, awards damages and payments made by the Recipient that may arise (whether directly or indirectly) in any way whatsoever from the Recipient’s use of these Data or from the unavailability of, or break in access to, these Data for whatever reason and; c) bear no responsibility for the further analysis or interpretation of these Data. 7. The User Institution agrees to follow the Fort Lauderdale Guidelines (http://www.wellcome.ac.uk/stellent/groups/corporatesite/@policy_communications/documents/web_document/wtd003207.pdf ) and the Toronto Statement (http://www.nature.com/nature/journal/v461/n7261/full/461168a.html). This includes but is not limited to recognizing the contribution of the Data Producers and including a proper acknowledgement in all reports or publications resulting from the use of these Data. 8. The User Institution agrees to follow the Publication Policy in Appendix III. This includes respecting the moratorium period for the Data Producers to publish the first peer-reviewed report describing and analyzing these Data. 9. The User Institution agrees not to make intellectual property claims on these Data and not to use intellectual property protection in ways that would prevent or block access to, or use of, any element of these Data, or conclusion drawn directly from these Data. 10. The User Institution can elect to perform further research that would add intellectual and resource capital to these data and decide to obtain intellectual property rights on these downstream discoveries. In this case, the User Institution agrees to implement licensing policies that will not obstruct further research and to follow the U.S. National Institutes of Health Best Practices for the Licensing of Genomic Inventions (2005) (https://www.icgc.org/files/daco/NIH_BestPracticesLicensingGenomicInventions_2005_en.pdf ) in conformity with the Organisation for Economic Co-operation and Development Guidelines for the Licensing of the Genetic Inventions (2006) (http://www.oecd.org/science/biotech/36198812.pdf ). 11. The User Institution agrees to destroy/discard the Data held, once it is no longer used for the Project, unless obliged to retain the data for archival purposes in conformity with audit or legal requirements. 12. The User Institution will notify MSCTLCC within 30 days of any changes or departures of Authorized Personnel. 13. The User Institution will notify MSCTLCC prior to any significant changes to the protocol for the Project. 14. The User Institution will notify MSCTLCC as soon as it becomes aware of a breach of the terms or conditions of this agreement. 15. MSCTLCC may terminate this agreement by written notice to the User Institution. If this agreement terminates for any reason, the User Institution will be required to destroy any Data held, including copies and backup copies. This clause does not prevent the User Institution from retaining these data for archival purpose in conformity with audit or legal requirements. 16. The User Institution accepts that it may be necessary for the Data Producers to alter the terms of this agreement from time to time. As an example, this may include specific provisions relating to the Data required by Data Producers other than MSCTLCC. In the event that changes are required, the Data Producers or their appointed agent will contact the User Institution to inform it of the changes and the User Institution may elect to accept the changes or terminate the agreement. 17. If requested, the User Institution will allow data security and management documentation to be inspected to verify that it is complying with the terms of this agreement. 18. The User Institution agrees to distribute a copy of these terms to the Authorized Personnel. The User Institution will procure that the Authorized Personnel comply with the terms of this agreement. 19. The User Institution accepts that the Data is protected by and subject to international laws, including but not limited to the UK Data Protection Act 1998, and that The User Institution are responsible for ensuring compliance with any such applicable law. The Data Producers reserve the right to request and inspect data security and management documentation to ensure the adequacy of data protection measures in countries that have no national laws comparable to that which pertain in the EAA. 20. This agreement (and any dispute, controversy, proceedings or claim of whatever nature arising out of this agreement or its formation) shall be construed, interpreted and governed by the laws of England and Wales and shall be subject to the non-exclusive jurisdiction of the English courts.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00003948791 bam 1.6 GB
EGAF00003948792 bam 1.7 GB
EGAF00003948793 bam 1.3 GB
EGAF00003948794 bam 2.8 GB
EGAF00003948795 bam 1.9 GB
EGAF00003948796 bam 1.8 GB
EGAF00003948797 bam 1.2 GB
EGAF00003948798 bam 1.0 GB
EGAF00003948799 bam 1.4 GB
EGAF00003948800 bam 2.7 GB
EGAF00003948801 bam 2.0 GB
EGAF00003948802 bam 6.8 GB
EGAF00003948803 bam 2.4 GB
EGAF00003948804 bam 2.7 GB
EGAF00003948805 bam 1.7 GB
EGAF00003948806 bam 2.6 GB
EGAF00003948807 bam 2.2 GB
EGAF00003948808 bam 1.5 GB
EGAF00003948809 bam 2.2 GB
EGAF00003948810 bam 1.7 GB
EGAF00003948811 bam 1.4 GB
EGAF00003948812 bam 2.2 GB
EGAF00003948813 bam 1.5 GB
EGAF00003948814 bam 1.7 GB
EGAF00003948815 bam 2.0 GB
EGAF00003948816 bam 1.4 GB
EGAF00003948817 bam 1.7 GB
EGAF00003948818 bam 1.4 GB
EGAF00003948819 bam 1.7 GB
EGAF00003948820 bam 2.8 GB
EGAF00003948821 bam 952.8 MB
EGAF00003948822 bam 1.2 GB
EGAF00003948823 bam 2.0 GB
EGAF00003948824 bam 1.5 GB
EGAF00003948825 bam 2.1 GB
EGAF00003948826 bam 1.4 GB
EGAF00003948827 bam 841.4 MB
EGAF00003948828 bam 1.3 GB
EGAF00003948829 bam 2.4 GB
EGAF00003948830 bam 1.6 GB
EGAF00003948831 bam 1.4 GB
EGAF00003948832 bam 2.0 GB
EGAF00003948833 bam 2.1 GB
EGAF00003948834 bam 1.4 GB
EGAF00003948835 bam 2.0 GB
EGAF00003948836 bam 2.0 GB
EGAF00003948837 bam 1.1 GB
EGAF00003948838 bam 1.7 GB
EGAF00003948839 bam 1.5 GB
EGAF00003948840 bam 2.2 GB
EGAF00003948841 bam 2.7 GB
EGAF00003948842 bam 1.5 GB
EGAF00003948843 bam 1.6 GB
EGAF00003948844 bam 2.4 GB
EGAF00003948845 bam 1.4 GB
EGAF00003948846 bam 1.9 GB
EGAF00003948847 bam 1.2 GB
EGAF00003948848 bam 1.2 GB
EGAF00003948849 bam 1.8 GB
EGAF00003948850 bam 1.3 GB
EGAF00003948851 bam 1.6 GB
EGAF00003948852 bam 1.5 GB
EGAF00003948853 bam 1.5 GB
EGAF00003948854 bam 1.2 GB
EGAF00003948855 bam 1.9 GB
EGAF00003948856 bam 1.7 GB
EGAF00003948857 bam 795.4 MB
EGAF00003948858 bam 3.4 GB
EGAF00003948859 bam 1.1 GB
EGAF00003948860 bam 2.8 GB
EGAF00003948861 bam 560.2 MB
EGAF00003948862 bam 1.7 GB
EGAF00003948863 bam 1.8 GB
EGAF00003948864 bam 2.9 GB
EGAF00003948865 bam 1.5 GB
EGAF00003948866 bam 2.3 GB
EGAF00003948867 bam 2.0 GB
EGAF00003948868 bam 2.4 GB
EGAF00003948869 bam 3.1 GB
EGAF00003948870 bam 2.4 GB
EGAF00003948871 bam 2.6 GB
EGAF00003948872 bam 3.0 GB
EGAF00003948873 bam 2.0 GB
EGAF00003948874 bam 1.9 GB
EGAF00003948875 bam 2.5 GB
EGAF00003948876 bam 2.0 GB
EGAF00003948877 bam 2.3 GB
EGAF00003948878 bam 2.4 GB
EGAF00003948879 bam 3.3 GB
EGAF00003948880 bam 2.6 GB
EGAF00003948881 bam 1.6 GB
EGAF00003948882 bam 2.0 GB
EGAF00003948883 bam 1.3 GB
EGAF00003948884 bam 2.5 GB
EGAF00003948885 bam 2.2 GB
EGAF00003948886 bam 1.6 GB
EGAF00003948887 bam 2.3 GB
EGAF00003948888 bam 2.2 GB
EGAF00003948889 bam 2.0 GB
EGAF00003948890 bam 1.9 GB
EGAF00003948891 bam 2.0 GB
EGAF00003948892 bam 2.3 GB
EGAF00003948893 bam 1.8 GB
EGAF00003948894 bam 1.8 GB
EGAF00003948895 bam 1.3 GB
EGAF00003948896 bam 1.2 GB
EGAF00003948897 bam 1.3 GB
107 Files (204.9 GB)