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76 cancer and normal whole genomes from eleven SI-NET patients

This dataset comprises of 76 cancer and normal whole genomes obtained from 11 SI-NET patients, in the form of two fastq files (forward and reverse reads) for each genome containing sequences generated by Illumina NovaSeq 6000 system.

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Data access policy to be signed by the parties willing to access SI-NET study data, adapted from THE WELLCOME TRUST CASE-CONTROL CONSORTIUM DATA ACCESS AGREEMENT

In signing this Agreement: 1. You agree to use the Data only for the advancement of medical research, according to the consent obtained from sample donors. 2. You agree to preserve, at all times, the confidentiality of information and Data pertaining to Data Subjects. In particular, You undertake not to use, or attempt to use the Data to compromise or otherwise infringe the confidentiality of information on Data Subjects and their right to privacy. 3. You agree not to attempt to link the data provided under this agreement to other information or archive data available for the data sets provided, even if access to that data has been formally granted to you, or it is freely available without restriction, without specific permission being sought from the relevent access committees. 4. You agree not to transfer or disclose the Data, in whole or part, or any identifiable material derived from the Data, to others, except as necessary for data/safety monitoring or programme management. Should You wish to share the Data with a collaborator outwith the same Institution, the third party must make a separate application for access to the Data. 5. You agree to use the data for the approved purpose and project described in your application; use of the data for a new purpose or project will require a new application and approval. 6. You accept that Data will be reissued from time to time, with suitable versioning. If the reissue is at the request of sample donors and/or other ethical scrutiny, You will destroy earlier versions of the Data. 7. You agree to acknowledge in any work based in whole or part on the Data, the published paper from which the Data derives, the version of the data, and the role of the the original data creators. 8. You accept that the original data creators, depositors or the funders of the Data or any part of the Data supplied: a) bear no legal responsibility for the accuracy or comprehensiveness of the Data; and b) accept no liability for indirect, consequential, or incidental, damages or losses arising from use of the Data, or from the unavailability of, or break in access to, the Data for whatever reason. 9. You understand and acknowledge that the Data is protected by copyright and other intellectual property rights, and that duplication, except as reasonably required to carry out Your research with the Data, or sale of all or part of the Data on any media is not permitted. 10. You recognise that nothing in this agreement shall operate to transfer to the User Institution any intellectual property rights relating to the Data. The User Institution has the right to develop intellectual property based on comparisons with their own data. 11. You accept that this agreement will terminate immediately upon any breach of this agreement by You and You will be required to destroy any Data held. 12. You accept that it may be necessary for the original data creators to alter the terms of this agreement from time to time in order to address new concerns. In this event, the original data creators or their appointed agent will contact You to inform You of any changes and You agree that Your continued use of the Data shall be dependent on the parties entering into a new version of the Agreement. 13. You agree that you will submit a report to the Data Access Committee, if requested, on completion of the agreed purpose. The Data Access Committee agrees to treat the report and all information, data, results, and conclusions contained within such report as confidential information belonging to the User Institution. 14. You accept that the Data is protected by and subject to international laws, including The EU's GDPR (General Data Protection Regulation), and that You are responsible for ensuring compliance with any such applicable law. The Data Access Committee reserves the right to request and inspect data security and management documentation to ensure the adequacy of data protection measures in countries that have no national laws comparable to GDPR. 15. This agreement shall be interpreted and construed in accordance with the laws of the country of the defending party, in cases where your Institution is the defending party, or the laws of Sweden, in cases where the original data creators are the defending party. Unless specified otherwise, reference in this agreement to a statute refers to that statute as it may be amended, or to any restated or successor legislation of comparable effect.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
Other
Other
Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00003943830 fastq.gz 29.8 GB
EGAF00003943831 fastq.gz 30.9 GB
EGAF00003943832 fastq.gz 33.4 GB
EGAF00003943833 fastq.gz 34.7 GB
EGAF00003943834 fastq.gz 30.2 GB
EGAF00003943835 fastq.gz 31.4 GB
EGAF00003943836 fastq.gz 29.3 GB
EGAF00003943837 fastq.gz 30.3 GB
EGAF00003943838 fastq.gz 29.2 GB
EGAF00003943839 fastq.gz 30.2 GB
EGAF00003943840 fastq.gz 28.4 GB
EGAF00003943841 fastq.gz 29.5 GB
EGAF00003943842 fastq.gz 27.7 GB
EGAF00003943843 fastq.gz 28.7 GB
EGAF00003943844 fastq.gz 26.7 GB
EGAF00003943845 fastq.gz 27.7 GB
EGAF00003943846 fastq.gz 28.8 GB
EGAF00003943847 fastq.gz 29.3 GB
EGAF00003943848 fastq.gz 30.3 GB
EGAF00003943849 fastq.gz 30.9 GB
EGAF00003943850 fastq.gz 29.3 GB
EGAF00003943851 fastq.gz 29.8 GB
EGAF00003943852 fastq.gz 30.2 GB
EGAF00003943853 fastq.gz 30.7 GB
EGAF00003943854 fastq.gz 30.5 GB
EGAF00003943855 fastq.gz 31.6 GB
EGAF00003943856 fastq.gz 32.2 GB
EGAF00003943857 fastq.gz 33.4 GB
EGAF00003943858 fastq.gz 28.3 GB
EGAF00003943859 fastq.gz 29.4 GB
EGAF00003943860 fastq.gz 30.0 GB
EGAF00003943861 fastq.gz 31.0 GB
EGAF00003943862 fastq.gz 29.5 GB
EGAF00003943863 fastq.gz 30.6 GB
EGAF00003943864 fastq.gz 30.7 GB
EGAF00003943865 fastq.gz 31.9 GB
EGAF00003943866 fastq.gz 29.0 GB
EGAF00003943867 fastq.gz 30.1 GB
EGAF00003943868 fastq.gz 29.9 GB
EGAF00003943869 fastq.gz 31.1 GB
EGAF00003943870 fastq.gz 27.7 GB
EGAF00003943871 fastq.gz 28.4 GB
EGAF00003943872 fastq.gz 32.1 GB
EGAF00003943873 fastq.gz 33.0 GB
EGAF00003943874 fastq.gz 28.2 GB
EGAF00003943875 fastq.gz 29.0 GB
EGAF00003943876 fastq.gz 27.0 GB
EGAF00003943877 fastq.gz 27.7 GB
EGAF00003943878 fastq.gz 28.1 GB
EGAF00003943879 fastq.gz 28.8 GB
EGAF00003943880 fastq.gz 27.6 GB
EGAF00003943881 fastq.gz 28.3 GB
EGAF00003943882 fastq.gz 28.0 GB
EGAF00003943883 fastq.gz 28.9 GB
EGAF00003943884 fastq.gz 31.3 GB
EGAF00003943885 fastq.gz 32.4 GB
EGAF00003943886 fastq.gz 29.4 GB
EGAF00003943887 fastq.gz 30.2 GB
EGAF00003943888 fastq.gz 33.7 GB
EGAF00003943889 fastq.gz 35.0 GB
EGAF00003943890 fastq.gz 27.9 GB
EGAF00003943891 fastq.gz 28.8 GB
EGAF00003943892 fastq.gz 28.5 GB
EGAF00003943893 fastq.gz 29.4 GB
EGAF00003943894 fastq.gz 28.2 GB
EGAF00003943895 fastq.gz 29.2 GB
EGAF00003943896 fastq.gz 28.5 GB
EGAF00003943897 fastq.gz 29.5 GB
EGAF00003943898 fastq.gz 28.0 GB
EGAF00003943899 fastq.gz 29.0 GB
EGAF00003943900 fastq.gz 28.7 GB
EGAF00003943901 fastq.gz 29.6 GB
EGAF00003943902 fastq.gz 29.8 GB
EGAF00003943903 fastq.gz 30.8 GB
EGAF00003943904 fastq.gz 31.9 GB
EGAF00003943905 fastq.gz 33.0 GB
EGAF00003943906 fastq.gz 29.0 GB
EGAF00003943907 fastq.gz 30.0 GB
EGAF00003943908 fastq.gz 29.4 GB
EGAF00003943909 fastq.gz 30.5 GB
EGAF00003943910 fastq.gz 29.5 GB
EGAF00003943911 fastq.gz 30.6 GB
EGAF00003943912 fastq.gz 29.4 GB
EGAF00003943913 fastq.gz 30.3 GB
EGAF00003943914 fastq.gz 30.1 GB
EGAF00003943915 fastq.gz 31.1 GB
EGAF00005067944 1615708623648 26.2 GB
EGAF00005067945 1615341994330 27.5 GB
EGAF00005067948 1615695906619 26.1 GB
EGAF00005067949 1615350544655 27.4 GB
EGAF00005067952 1615327938197 23.8 GB
EGAF00005067953 1615677513039 25.4 GB
EGAF00005067954 1615335348132 23.0 GB
EGAF00005067955 1615386303892 24.5 GB
EGAF00005067956 1615344902372 26.0 GB
EGAF00005067957 1615339220209 27.3 GB
EGAF00005067958 1615366746050 24.3 GB
EGAF00005067959 1615364946083 24.9 GB
EGAF00005067960 1615327884087 23.2 GB
EGAF00005067961 1615367176886 24.3 GB
EGAF00005067962 1615678399967 25.8 GB
EGAF00005067963 1615367176886 27.5 GB
EGAF00005067966 1615327819308 25.1 GB
EGAF00005067967 1615353305442 26.7 GB
EGAF00005067968 1615683384836 26.5 GB
EGAF00005067969 1615344842496 27.9 GB
EGAF00005067970 1615327676934 25.2 GB
EGAF00005067971 1615684664145 26.5 GB
EGAF00005067972 1615336281934 25.1 GB
EGAF00005067973 1615696625476 26.4 GB
EGAF00005067988 1615411265567 25.1 GB
EGAF00005067989 1615686140555 26.7 GB
EGAF00005067992 1615332615322 25.6 GB
EGAF00005067993 1615698497887 27.2 GB
EGAF00005067994 1615376522545 24.3 GB
EGAF00005067995 1615346942811 26.0 GB
EGAF00005067996 1615683628790 25.8 GB
EGAF00005067997 1615341548683 27.2 GB
EGAF00005067998 1615344242330 28.6 GB
EGAF00005067999 1615692775860 30.7 GB
EGAF00005068000 1615341548683 26.0 GB
EGAF00005068001 1615335348132 27.8 GB
EGAF00005068002 1615364822799 29.3 GB
EGAF00005068003 1615694355377 31.1 GB
EGAF00005068006 1615330682950 26.3 GB
EGAF00005068007 1615700766571 28.0 GB
EGAF00005068008 1615692775861 26.1 GB
EGAF00005068009 1615360923518 27.9 GB
EGAF00005068010 1615369807207 23.9 GB
EGAF00005068011 1615337951170 25.2 GB
EGAF00005069296 1615689618401 26.0 GB
EGAF00005069297 1615686088585 27.7 GB
EGAF00005069308 1615703949810 28.8 GB
EGAF00005069309 1615692775860 31.0 GB
EGAF00005069310 1615688775439 28.6 GB
EGAF00005069311 1615693451004 30.2 GB
EGAF00005069312 1615692775860 26.2 GB
EGAF00005069313 1615692775860 27.7 GB
EGAF00005069314 1615689193180 26.4 GB
EGAF00005069315 1615686629164 27.9 GB
EGAF00005069318 1615697167617 27.6 GB
EGAF00005069319 1615706182104 29.2 GB
EGAF00005069320 1615683309601 26.8 GB
EGAF00005069321 1615694944369 28.1 GB
EGAF00005069322 1615696086885 26.5 GB
EGAF00005069323 1615703261248 27.9 GB
EGAF00005069324 1615689515983 29.3 GB
EGAF00005069325 1615692775860 30.9 GB
EGAF00005069334 1615679593190 26.1 GB
EGAF00005069335 1615685794691 27.3 GB
EGAF00005069342 1615677513039 25.5 GB
EGAF00005069343 1615689071767 27.0 GB
152 Files (4.3 TB)