76 cancer and normal whole genomes from eleven SI-NET patients

This dataset comprises of 76 cancer and normal whole genomes obtained from 11 SI-NET patients, in the form of two fastq files (forward and reverse reads) for each genome containing sequences generated by Illumina NovaSeq 6000 system.

76 samples
DAC: EGAC00001002004
Technology: Illumina NovaSeq 6000

Access Policy3 Studies Files

Metadata

Request Access

HMB DUO:0000006 (version: 2019-01-07)health or medical or biomedical researchThis data use permission indicates that use is allowed for health/medical/biomedical purposes; does not include the study of population origins or ancestry.
PUB DUO:0000019 (version: 2019-01-07)publication requiredThis data use modifier indicates that requestor agrees to make results of studies using the data available to the larger scientific community.
US DUO:0000026 (version: 2019-01-07)user specific restrictionThis data use modifier indicates that use is limited to use by approved users.
PS DUO:0000027 (version: 2019-01-07)project specific restrictionThis data use modifier indicates that use is limited to use within an approved project.
IS DUO:0000028 (version: 2019-01-07)institution specific restrictionThis data use modifier indicates that use is limited to use within an approved institution.

Data access policy to be signed by the parties willing to access SI-NET study data, adapted from THE WELLCOME TRUST CASE-CONTROL CONSORTIUM DATA ACCESS AGREEMENT

In signing this Agreement: 1. You agree to use the Data only for the advancement of medical research, according to the consent obtained from sample donors. 2. You agree to preserve, at all times, the confidentiality of information and Data pertaining to Data Subjects. In particular, You undertake not to use, or attempt to use the Data to compromise or otherwise infringe the confidentiality of information on Data Subjects and their right to privacy. 3. You agree not to attempt to link the data provided under this agreement to other information or archive data available for the data sets provided, even if access to that data has been formally granted to you, or it is freely available without restriction, without specific permission being sought from the relevent access committees. 4. You agree not to transfer or disclose the Data, in whole or part, or any identifiable material derived from the Data, to others, except as necessary for data/safety monitoring or programme management. Should You wish to share the Data with a collaborator outwith the same Institution, the third party must make a separate application for access to the Data. 5. You agree to use the data for the approved purpose and project described in your application; use of the data for a new purpose or project will require a new application and approval. 6. You accept that Data will be reissued from time to time, with suitable versioning. If the reissue is at the request of sample donors and/or other ethical scrutiny, You will destroy earlier versions of the Data. 7. You agree to acknowledge in any work based in whole or part on the Data, the published paper from which the Data derives, the version of the data, and the role of the the original data creators. 8. You accept that the original data creators, depositors or the funders of the Data or any part of the Data supplied: a) bear no legal responsibility for the accuracy or comprehensiveness of the Data; and b) accept no liability for indirect, consequential, or incidental, damages or losses arising from use of the Data, or from the unavailability of, or break in access to, the Data for whatever reason. 9. You understand and acknowledge that the Data is protected by copyright and other intellectual property rights, and that duplication, except as reasonably required to carry out Your research with the Data, or sale of all or part of the Data on any media is not permitted. 10. You recognise that nothing in this agreement shall operate to transfer to the User Institution any intellectual property rights relating to the Data. The User Institution has the right to develop intellectual property based on comparisons with their own data. 11. You accept that this agreement will terminate immediately upon any breach of this agreement by You and You will be required to destroy any Data held. 12. You accept that it may be necessary for the original data creators to alter the terms of this agreement from time to time in order to address new concerns. In this event, the original data creators or their appointed agent will contact You to inform You of any changes and You agree that Your continued use of the Data shall be dependent on the parties entering into a new version of the Agreement. 13. You agree that you will submit a report to the Data Access Committee, if requested, on completion of the agreed purpose. The Data Access Committee agrees to treat the report and all information, data, results, and conclusions contained within such report as confidential information belonging to the User Institution. 14. You accept that the Data is protected by and subject to international laws, including The EU's GDPR (General Data Protection Regulation), and that You are responsible for ensuring compliance with any such applicable law. The Data Access Committee reserves the right to request and inspect data security and management documentation to ensure the adequacy of data protection measures in countries that have no national laws comparable to GDPR. 15. This agreement shall be interpreted and construed in accordance with the laws of the country of the defending party, in cases where your Institution is the defending party, or the laws of Sweden, in cases where the original data creators are the defending party. Unless specified otherwise, reference in this agreement to a statute refers to that statute as it may be amended, or to any restated or successor legislation of comparable effect.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID	Study Title	Study Type
EGAS00001004435	DO NOT USE - Whole genome sequencing of SI-NETs from five patients	Other
EGAS00001005009	DO NOT USE - Whole genome sequencing of SI-NETs from six patients	Other
EGAS00001005096	Whole genome sequencing of 76 tumor and normal samples from 11 SI-NET patients	Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID	File Type	Size
EGAF00003943830	fastq.gz	29.8 GB
EGAF00003943831	fastq.gz	30.9 GB
EGAF00003943832	fastq.gz	33.4 GB
EGAF00003943833	fastq.gz	34.7 GB
EGAF00003943834	fastq.gz	30.2 GB
EGAF00003943835	fastq.gz	31.4 GB
EGAF00003943836	fastq.gz	29.3 GB
EGAF00003943837	fastq.gz	30.3 GB
EGAF00003943838	fastq.gz	29.2 GB
EGAF00003943839	fastq.gz	30.2 GB
EGAF00003943840	fastq.gz	28.4 GB
EGAF00003943841	fastq.gz	29.5 GB
EGAF00003943842	fastq.gz	27.7 GB
EGAF00003943843	fastq.gz	28.7 GB
EGAF00003943844	fastq.gz	26.7 GB
EGAF00003943845	fastq.gz	27.7 GB
EGAF00003943846	fastq.gz	28.8 GB
EGAF00003943847	fastq.gz	29.3 GB
EGAF00003943848	fastq.gz	30.3 GB
EGAF00003943849	fastq.gz	30.9 GB
EGAF00003943850	fastq.gz	29.3 GB
EGAF00003943851	fastq.gz	29.8 GB
EGAF00003943852	fastq.gz	30.2 GB
EGAF00003943853	fastq.gz	30.7 GB
EGAF00003943854	fastq.gz	30.5 GB
EGAF00003943855	fastq.gz	31.6 GB
EGAF00003943856	fastq.gz	32.2 GB
EGAF00003943857	fastq.gz	33.4 GB
EGAF00003943858	fastq.gz	28.3 GB
EGAF00003943859	fastq.gz	29.4 GB
EGAF00003943860	fastq.gz	30.0 GB
EGAF00003943861	fastq.gz	31.0 GB
EGAF00003943862	fastq.gz	29.5 GB
EGAF00003943863	fastq.gz	30.6 GB
EGAF00003943864	fastq.gz	30.7 GB
EGAF00003943865	fastq.gz	31.9 GB
EGAF00003943866	fastq.gz	29.0 GB
EGAF00003943867	fastq.gz	30.1 GB
EGAF00003943868	fastq.gz	29.9 GB
EGAF00003943869	fastq.gz	31.1 GB
EGAF00003943870	fastq.gz	27.7 GB
EGAF00003943871	fastq.gz	28.4 GB
EGAF00003943872	fastq.gz	32.1 GB
EGAF00003943873	fastq.gz	33.0 GB
EGAF00003943874	fastq.gz	28.2 GB
EGAF00003943875	fastq.gz	29.0 GB
EGAF00003943876	fastq.gz	27.0 GB
EGAF00003943877	fastq.gz	27.7 GB
EGAF00003943878	fastq.gz	28.1 GB
EGAF00003943879	fastq.gz	28.8 GB
EGAF00003943880	fastq.gz	27.6 GB
EGAF00003943881	fastq.gz	28.3 GB
EGAF00003943882	fastq.gz	28.0 GB
EGAF00003943883	fastq.gz	28.9 GB
EGAF00003943884	fastq.gz	31.3 GB
EGAF00003943885	fastq.gz	32.4 GB
EGAF00003943886	fastq.gz	29.4 GB
EGAF00003943887	fastq.gz	30.2 GB
EGAF00003943888	fastq.gz	33.7 GB
EGAF00003943889	fastq.gz	35.0 GB
EGAF00003943890	fastq.gz	27.9 GB
EGAF00003943891	fastq.gz	28.8 GB
EGAF00003943892	fastq.gz	28.5 GB
EGAF00003943893	fastq.gz	29.4 GB
EGAF00003943894	fastq.gz	28.2 GB
EGAF00003943895	fastq.gz	29.2 GB
EGAF00003943896	fastq.gz	28.5 GB
EGAF00003943897	fastq.gz	29.5 GB
EGAF00003943898	fastq.gz	28.0 GB
EGAF00003943899	fastq.gz	29.0 GB
EGAF00003943900	fastq.gz	28.7 GB
EGAF00003943901	fastq.gz	29.6 GB
EGAF00003943902	fastq.gz	29.8 GB
EGAF00003943903	fastq.gz	30.8 GB
EGAF00003943904	fastq.gz	31.9 GB
EGAF00003943905	fastq.gz	33.0 GB
EGAF00003943906	fastq.gz	29.0 GB
EGAF00003943907	fastq.gz	30.0 GB
EGAF00003943908	fastq.gz	29.4 GB
EGAF00003943909	fastq.gz	30.5 GB
EGAF00003943910	fastq.gz	29.5 GB
EGAF00003943911	fastq.gz	30.6 GB
EGAF00003943912	fastq.gz	29.4 GB
EGAF00003943913	fastq.gz	30.3 GB
EGAF00003943914	fastq.gz	30.1 GB
EGAF00003943915	fastq.gz	31.1 GB
EGAF00005067944	fastq.gz	26.2 GB
EGAF00005067945	fastq.gz	27.5 GB
EGAF00005067948	fastq.gz	26.1 GB
EGAF00005067949	fastq.gz	27.4 GB
EGAF00005067952	fastq.gz	23.8 GB
EGAF00005067953	fastq.gz	25.4 GB
EGAF00005067954	fastq.gz	23.0 GB
EGAF00005067955	fastq.gz	24.5 GB
EGAF00005067956	fastq.gz	26.0 GB
EGAF00005067957	fastq.gz	27.3 GB
EGAF00005067958	fastq.gz	24.3 GB
EGAF00005067959	fastq.gz	24.9 GB
EGAF00005067960	fastq.gz	23.2 GB
EGAF00005067961	fastq.gz	24.3 GB
EGAF00005067962	fastq.gz	25.8 GB
EGAF00005067963	fastq.gz	27.5 GB
EGAF00005067966	fastq.gz	25.1 GB
EGAF00005067967	fastq.gz	26.7 GB
EGAF00005067968	fastq.gz	26.5 GB
EGAF00005067969	fastq.gz	27.9 GB
EGAF00005067970	fastq.gz	25.2 GB
EGAF00005067971	fastq.gz	26.5 GB
EGAF00005067972	fastq.gz	25.1 GB
EGAF00005067973	fastq.gz	26.4 GB
EGAF00005067988	fastq.gz	25.1 GB
EGAF00005067989	fastq.gz	26.7 GB
EGAF00005067992	fastq.gz	25.6 GB
EGAF00005067993	fastq.gz	27.2 GB
EGAF00005067994	fastq.gz	24.3 GB
EGAF00005067995	fastq.gz	26.0 GB
EGAF00005067996	fastq.gz	25.8 GB
EGAF00005067997	fastq.gz	27.2 GB
EGAF00005067998	fastq.gz	28.6 GB
EGAF00005067999	fastq.gz	30.7 GB
EGAF00005068000	fastq.gz	26.0 GB
EGAF00005068001	fastq.gz	27.8 GB
EGAF00005068002	fastq.gz	29.3 GB
EGAF00005068003	fastq.gz	31.1 GB
EGAF00005068006	fastq.gz	26.3 GB
EGAF00005068007	fastq.gz	28.0 GB
EGAF00005068008	fastq.gz	26.1 GB
EGAF00005068009	fastq.gz	27.9 GB
EGAF00005068010	fastq.gz	23.9 GB
EGAF00005068011	fastq.gz	25.2 GB
EGAF00005069296	fastq.gz	26.0 GB
EGAF00005069297	fastq.gz	27.7 GB
EGAF00005069308	fastq.gz	28.8 GB
EGAF00005069309	fastq.gz	31.0 GB
EGAF00005069310	fastq.gz	28.6 GB
EGAF00005069311	fastq.gz	30.2 GB
EGAF00005069312	fastq.gz	26.2 GB
EGAF00005069313	fastq.gz	27.7 GB
EGAF00005069314	fastq.gz	26.4 GB
EGAF00005069315	fastq.gz	27.9 GB
EGAF00005069318	fastq.gz	27.6 GB
EGAF00005069319	fastq.gz	29.2 GB
EGAF00005069320	fastq.gz	26.8 GB
EGAF00005069321	fastq.gz	28.1 GB
EGAF00005069322	fastq.gz	26.5 GB
EGAF00005069323	fastq.gz	27.9 GB
EGAF00005069324	fastq.gz	29.3 GB
EGAF00005069325	fastq.gz	30.9 GB
EGAF00005069334	fastq.gz	26.1 GB
EGAF00005069335	fastq.gz	27.3 GB
EGAF00005069342	fastq.gz	25.5 GB
EGAF00005069343	fastq.gz	27.0 GB
152 Files (4.3 TB)