76 cancer and normal whole genomes from eleven SI-NET patients
This dataset comprises of 76 cancer and normal whole genomes obtained from 11 SI-NET patients, in the form of two fastq files (forward and reverse reads) for each genome containing sequences generated by Illumina NovaSeq 6000 system.
- 76 samples
- DAC: EGAC00001002004
- Technology: Illumina NovaSeq 6000
- HMB DUO:0000006 (version: 2019-01-07)health or medical or biomedical researchThis data use permission indicates that use is allowed for health/medical/biomedical purposes; does not include the study of population origins or ancestry.
- PUB DUO:0000019 (version: 2019-01-07)publication requiredThis data use modifier indicates that requestor agrees to make results of studies using the data available to the larger scientific community.
- US DUO:0000026 (version: 2019-01-07)user specific restrictionThis data use modifier indicates that use is limited to use by approved users.
- PS DUO:0000027 (version: 2019-01-07)project specific restrictionThis data use modifier indicates that use is limited to use within an approved project.
- IS DUO:0000028 (version: 2019-01-07)institution specific restrictionThis data use modifier indicates that use is limited to use within an approved institution.
Data access policy to be signed by the parties willing to access SI-NET study data, adapted from THE WELLCOME TRUST CASE-CONTROL CONSORTIUM DATA ACCESS AGREEMENT
In signing this Agreement: 1. You agree to use the Data only for the advancement of medical research, according to the consent obtained from sample donors. 2. You agree to preserve, at all times, the confidentiality of information and Data pertaining to Data Subjects. In particular, You undertake not to use, or attempt to use the Data to compromise or otherwise infringe the confidentiality of information on Data Subjects and their right to privacy. 3. You agree not to attempt to link the data provided under this agreement to other information or archive data available for the data sets provided, even if access to that data has been formally granted to you, or it is freely available without restriction, without specific permission being sought from the relevent access committees. 4. You agree not to transfer or disclose the Data, in whole or part, or any identifiable material derived from the Data, to others, except as necessary for data/safety monitoring or programme management. Should You wish to share the Data with a collaborator outwith the same Institution, the third party must make a separate application for access to the Data. 5. You agree to use the data for the approved purpose and project described in your application; use of the data for a new purpose or project will require a new application and approval. 6. You accept that Data will be reissued from time to time, with suitable versioning. If the reissue is at the request of sample donors and/or other ethical scrutiny, You will destroy earlier versions of the Data. 7. You agree to acknowledge in any work based in whole or part on the Data, the published paper from which the Data derives, the version of the data, and the role of the the original data creators. 8. You accept that the original data creators, depositors or the funders of the Data or any part of the Data supplied: a) bear no legal responsibility for the accuracy or comprehensiveness of the Data; and b) accept no liability for indirect, consequential, or incidental, damages or losses arising from use of the Data, or from the unavailability of, or break in access to, the Data for whatever reason. 9. You understand and acknowledge that the Data is protected by copyright and other intellectual property rights, and that duplication, except as reasonably required to carry out Your research with the Data, or sale of all or part of the Data on any media is not permitted. 10. You recognise that nothing in this agreement shall operate to transfer to the User Institution any intellectual property rights relating to the Data. The User Institution has the right to develop intellectual property based on comparisons with their own data. 11. You accept that this agreement will terminate immediately upon any breach of this agreement by You and You will be required to destroy any Data held. 12. You accept that it may be necessary for the original data creators to alter the terms of this agreement from time to time in order to address new concerns. In this event, the original data creators or their appointed agent will contact You to inform You of any changes and You agree that Your continued use of the Data shall be dependent on the parties entering into a new version of the Agreement. 13. You agree that you will submit a report to the Data Access Committee, if requested, on completion of the agreed purpose. The Data Access Committee agrees to treat the report and all information, data, results, and conclusions contained within such report as confidential information belonging to the User Institution. 14. You accept that the Data is protected by and subject to international laws, including The EU's GDPR (General Data Protection Regulation), and that You are responsible for ensuring compliance with any such applicable law. The Data Access Committee reserves the right to request and inspect data security and management documentation to ensure the adequacy of data protection measures in countries that have no national laws comparable to GDPR. 15. This agreement shall be interpreted and construed in accordance with the laws of the country of the defending party, in cases where your Institution is the defending party, or the laws of Sweden, in cases where the original data creators are the defending party. Unless specified otherwise, reference in this agreement to a statute refers to that statute as it may be amended, or to any restated or successor legislation of comparable effect.
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
Study ID | Study Title | Study Type |
---|---|---|
Other | ||
Other | ||
Other |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
ID | File Type | Size | Located in | |
---|---|---|---|---|
EGAF00003943830 | fastq.gz | 29.8 GB | ||
EGAF00003943831 | fastq.gz | 30.9 GB | ||
EGAF00003943832 | fastq.gz | 33.4 GB | ||
EGAF00003943833 | fastq.gz | 34.7 GB | ||
EGAF00003943834 | fastq.gz | 30.2 GB | ||
EGAF00003943835 | fastq.gz | 31.4 GB | ||
EGAF00003943836 | fastq.gz | 29.3 GB | ||
EGAF00003943837 | fastq.gz | 30.3 GB | ||
EGAF00003943838 | fastq.gz | 29.2 GB | ||
EGAF00003943839 | fastq.gz | 30.2 GB | ||
EGAF00003943840 | fastq.gz | 28.4 GB | ||
EGAF00003943841 | fastq.gz | 29.5 GB | ||
EGAF00003943842 | fastq.gz | 27.7 GB | ||
EGAF00003943843 | fastq.gz | 28.7 GB | ||
EGAF00003943844 | fastq.gz | 26.7 GB | ||
EGAF00003943845 | fastq.gz | 27.7 GB | ||
EGAF00003943846 | fastq.gz | 28.8 GB | ||
EGAF00003943847 | fastq.gz | 29.3 GB | ||
EGAF00003943848 | fastq.gz | 30.3 GB | ||
EGAF00003943849 | fastq.gz | 30.9 GB | ||
EGAF00003943850 | fastq.gz | 29.3 GB | ||
EGAF00003943851 | fastq.gz | 29.8 GB | ||
EGAF00003943852 | fastq.gz | 30.2 GB | ||
EGAF00003943853 | fastq.gz | 30.7 GB | ||
EGAF00003943854 | fastq.gz | 30.5 GB | ||
EGAF00003943855 | fastq.gz | 31.6 GB | ||
EGAF00003943856 | fastq.gz | 32.2 GB | ||
EGAF00003943857 | fastq.gz | 33.4 GB | ||
EGAF00003943858 | fastq.gz | 28.3 GB | ||
EGAF00003943859 | fastq.gz | 29.4 GB | ||
EGAF00003943860 | fastq.gz | 30.0 GB | ||
EGAF00003943861 | fastq.gz | 31.0 GB | ||
EGAF00003943862 | fastq.gz | 29.5 GB | ||
EGAF00003943863 | fastq.gz | 30.6 GB | ||
EGAF00003943864 | fastq.gz | 30.7 GB | ||
EGAF00003943865 | fastq.gz | 31.9 GB | ||
EGAF00003943866 | fastq.gz | 29.0 GB | ||
EGAF00003943867 | fastq.gz | 30.1 GB | ||
EGAF00003943868 | fastq.gz | 29.9 GB | ||
EGAF00003943869 | fastq.gz | 31.1 GB | ||
EGAF00003943870 | fastq.gz | 27.7 GB | ||
EGAF00003943871 | fastq.gz | 28.4 GB | ||
EGAF00003943872 | fastq.gz | 32.1 GB | ||
EGAF00003943873 | fastq.gz | 33.0 GB | ||
EGAF00003943874 | fastq.gz | 28.2 GB | ||
EGAF00003943875 | fastq.gz | 29.0 GB | ||
EGAF00003943876 | fastq.gz | 27.0 GB | ||
EGAF00003943877 | fastq.gz | 27.7 GB | ||
EGAF00003943878 | fastq.gz | 28.1 GB | ||
EGAF00003943879 | fastq.gz | 28.8 GB | ||
EGAF00003943880 | fastq.gz | 27.6 GB | ||
EGAF00003943881 | fastq.gz | 28.3 GB | ||
EGAF00003943882 | fastq.gz | 28.0 GB | ||
EGAF00003943883 | fastq.gz | 28.9 GB | ||
EGAF00003943884 | fastq.gz | 31.3 GB | ||
EGAF00003943885 | fastq.gz | 32.4 GB | ||
EGAF00003943886 | fastq.gz | 29.4 GB | ||
EGAF00003943887 | fastq.gz | 30.2 GB | ||
EGAF00003943888 | fastq.gz | 33.7 GB | ||
EGAF00003943889 | fastq.gz | 35.0 GB | ||
EGAF00003943890 | fastq.gz | 27.9 GB | ||
EGAF00003943891 | fastq.gz | 28.8 GB | ||
EGAF00003943892 | fastq.gz | 28.5 GB | ||
EGAF00003943893 | fastq.gz | 29.4 GB | ||
EGAF00003943894 | fastq.gz | 28.2 GB | ||
EGAF00003943895 | fastq.gz | 29.2 GB | ||
EGAF00003943896 | fastq.gz | 28.5 GB | ||
EGAF00003943897 | fastq.gz | 29.5 GB | ||
EGAF00003943898 | fastq.gz | 28.0 GB | ||
EGAF00003943899 | fastq.gz | 29.0 GB | ||
EGAF00003943900 | fastq.gz | 28.7 GB | ||
EGAF00003943901 | fastq.gz | 29.6 GB | ||
EGAF00003943902 | fastq.gz | 29.8 GB | ||
EGAF00003943903 | fastq.gz | 30.8 GB | ||
EGAF00003943904 | fastq.gz | 31.9 GB | ||
EGAF00003943905 | fastq.gz | 33.0 GB | ||
EGAF00003943906 | fastq.gz | 29.0 GB | ||
EGAF00003943907 | fastq.gz | 30.0 GB | ||
EGAF00003943908 | fastq.gz | 29.4 GB | ||
EGAF00003943909 | fastq.gz | 30.5 GB | ||
EGAF00003943910 | fastq.gz | 29.5 GB | ||
EGAF00003943911 | fastq.gz | 30.6 GB | ||
EGAF00003943912 | fastq.gz | 29.4 GB | ||
EGAF00003943913 | fastq.gz | 30.3 GB | ||
EGAF00003943914 | fastq.gz | 30.1 GB | ||
EGAF00003943915 | fastq.gz | 31.1 GB | ||
EGAF00005067944 | 1615708623648 | 26.2 GB | ||
EGAF00005067945 | 1615341994330 | 27.5 GB | ||
EGAF00005067948 | 1615695906619 | 26.1 GB | ||
EGAF00005067949 | 1615350544655 | 27.4 GB | ||
EGAF00005067952 | 1615327938197 | 23.8 GB | ||
EGAF00005067953 | 1615677513039 | 25.4 GB | ||
EGAF00005067954 | 1615335348132 | 23.0 GB | ||
EGAF00005067955 | 1615386303892 | 24.5 GB | ||
EGAF00005067956 | 1615344902372 | 26.0 GB | ||
EGAF00005067957 | 1615339220209 | 27.3 GB | ||
EGAF00005067958 | 1615366746050 | 24.3 GB | ||
EGAF00005067959 | 1615364946083 | 24.9 GB | ||
EGAF00005067960 | 1615327884087 | 23.2 GB | ||
EGAF00005067961 | 1615367176886 | 24.3 GB | ||
EGAF00005067962 | 1615678399967 | 25.8 GB | ||
EGAF00005067963 | 1615367176886 | 27.5 GB | ||
EGAF00005067966 | 1615327819308 | 25.1 GB | ||
EGAF00005067967 | 1615353305442 | 26.7 GB | ||
EGAF00005067968 | 1615683384836 | 26.5 GB | ||
EGAF00005067969 | 1615344842496 | 27.9 GB | ||
EGAF00005067970 | 1615327676934 | 25.2 GB | ||
EGAF00005067971 | 1615684664145 | 26.5 GB | ||
EGAF00005067972 | 1615336281934 | 25.1 GB | ||
EGAF00005067973 | 1615696625476 | 26.4 GB | ||
EGAF00005067988 | 1615411265567 | 25.1 GB | ||
EGAF00005067989 | 1615686140555 | 26.7 GB | ||
EGAF00005067992 | 1615332615322 | 25.6 GB | ||
EGAF00005067993 | 1615698497887 | 27.2 GB | ||
EGAF00005067994 | 1615376522545 | 24.3 GB | ||
EGAF00005067995 | 1615346942811 | 26.0 GB | ||
EGAF00005067996 | 1615683628790 | 25.8 GB | ||
EGAF00005067997 | 1615341548683 | 27.2 GB | ||
EGAF00005067998 | 1615344242330 | 28.6 GB | ||
EGAF00005067999 | 1615692775860 | 30.7 GB | ||
EGAF00005068000 | 1615341548683 | 26.0 GB | ||
EGAF00005068001 | 1615335348132 | 27.8 GB | ||
EGAF00005068002 | 1615364822799 | 29.3 GB | ||
EGAF00005068003 | 1615694355377 | 31.1 GB | ||
EGAF00005068006 | 1615330682950 | 26.3 GB | ||
EGAF00005068007 | 1615700766571 | 28.0 GB | ||
EGAF00005068008 | 1615692775861 | 26.1 GB | ||
EGAF00005068009 | 1615360923518 | 27.9 GB | ||
EGAF00005068010 | 1615369807207 | 23.9 GB | ||
EGAF00005068011 | 1615337951170 | 25.2 GB | ||
EGAF00005069296 | 1615689618401 | 26.0 GB | ||
EGAF00005069297 | 1615686088585 | 27.7 GB | ||
EGAF00005069308 | 1615703949810 | 28.8 GB | ||
EGAF00005069309 | 1615692775860 | 31.0 GB | ||
EGAF00005069310 | 1615688775439 | 28.6 GB | ||
EGAF00005069311 | 1615693451004 | 30.2 GB | ||
EGAF00005069312 | 1615692775860 | 26.2 GB | ||
EGAF00005069313 | 1615692775860 | 27.7 GB | ||
EGAF00005069314 | 1615689193180 | 26.4 GB | ||
EGAF00005069315 | 1615686629164 | 27.9 GB | ||
EGAF00005069318 | 1615697167617 | 27.6 GB | ||
EGAF00005069319 | 1615706182104 | 29.2 GB | ||
EGAF00005069320 | 1615683309601 | 26.8 GB | ||
EGAF00005069321 | 1615694944369 | 28.1 GB | ||
EGAF00005069322 | 1615696086885 | 26.5 GB | ||
EGAF00005069323 | 1615703261248 | 27.9 GB | ||
EGAF00005069324 | 1615689515983 | 29.3 GB | ||
EGAF00005069325 | 1615692775860 | 30.9 GB | ||
EGAF00005069334 | 1615679593190 | 26.1 GB | ||
EGAF00005069335 | 1615685794691 | 27.3 GB | ||
EGAF00005069342 | 1615677513039 | 25.5 GB | ||
EGAF00005069343 | 1615689071767 | 27.0 GB | ||
152 Files (4.3 TB) |