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bulkRNA

Bulk RNA-seq for cALL patient-derived PDX samples

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The data within this dataset will be made available to researchers from recognised academic institutions that wish to perform further research on related topics.

DATA ACCESS AGREEMENT These terms and conditions govern access to the managed access datasets (details of which are set out in Appendix I) to which the User Institution has requested access. The User Institution agrees to be bound by these terms and conditions. Definitions Authorised Personnel: The individuals at the User Institution to whom Prof. Tariq Enver grants access to the Data. This includes the User, the individuals listed in Appendix II and any other individuals for whom the User Institution subsequently requests access to the Data. Details of the initial Authorised Personnel are set out in Appendix II. Data: The managed access datasets to which the User Institution has requested access. Data Producers: Prof. Tariq Enver and the collaborators listed in Appendix I responsible for the development, organisation, and oversight of these Data. External Collaborator: A collaborator of the User, working for an institution other than the User Institution. Project: The project for which the User Institution has requested access to these Data. A description of the Project is set out in Appendix II. Publications: Includes, without limitation, articles published in print journals, electronic journals, reviews, books, posters and other written and verbal presentations of research. Research Participant: An individual whose data form part of these Data. Research Purposes: Shall mean research that is seeking to advance the understanding of genetics and genomics, including the treatment of disorders, and work on statistical methods that may be applied to such research. User: The principal investigator for the Project. User Institution(s): The Institution that has requested access to the Data. 1. The User Institution agrees to only use these Data for the purpose of the Project (described in Appendix II) and only for Research Purposes. The User Institution further agrees that it will only use these Data for Research Purposes which are within the limitations (if any) set out in Appendix I. 2. The User Institution agrees to preserve, at all times, the confidentiality of these Data. In particular, it undertakes not to use, or attempt to use these Data to compromise or otherwise infringe the confidentiality of information on Research Participants. Without prejudice to the generality of the foregoing, the User Institution agrees to use at least the measures set out in Appendix I to protect these Data. 3. The User Institution agrees to protect the confidentiality of Research Participants in any research papers or publications that they prepare by taking all reasonable care to limit the possibility of identification. 4. The User Institution agrees not to link or combine these Data to other information or archived data available in a way that could re-identify the Research Participants, even if access to that data has been formally granted to the User Institution or is freely available without restriction. 5. The User Institution agrees only to transfer or disclose these Data, in whole or part, or any material derived from these Data, to the Authorised Personnel. Should the User Institution wish to share these Data with an External Collaborator, the External Collaborator must complete a separate application for access to these Data. 6. The User Institution agrees that the Data Producers, and all other parties involved in the creation, funding or protection of these Data: a) make no warranty or representation, express or implied as to the accuracy, quality or comprehensiveness of these Data; b) exclude to the fullest extent permitted by law all liability for actions, claims, proceedings, demands, losses (including but not limited to loss of profit), costs, awards damages and payments made by the Recipient that may arise (whether directly or indirectly) in any way whatsoever from the Recipient’s use of these Data or from the unavailability of, or break in access to, these Data for whatever reason and; c) bear no responsibility for the further analysis or interpretation of these Data. 7. The User Institution agrees to follow the Fort Lauderdale Guidelines (http://www.wellcome.ac.uk/stellent/groups/corporatesite/@policy_communications/documents/web_document/wtd003207.pdf ) and the Toronto Statement (http://www.nature.com/nature/journal/v461/n7261/full/461168a.html). This includes but is not limited to recognising the contribution of the Data Producers and including a proper acknowledgement in all reports or publications resulting from the use of these Data. 8. The User Institution agrees to follow the Publication Policy in Appendix III. This includes respecting the moratorium period for the Data Producers to publish the first peer-reviewed report describing and analysing these Data. 9. The User Institution agrees not to make intellectual property claims on these Data and not to use intellectual property protection in ways that would prevent or block access to, or use of, any element of these Data, or conclusion drawn directly from these Data. 10. The User Institution can elect to perform further research that would add intellectual and resource capital to these data and decide to obtain intellectual property rights on these downstream discoveries. In this case, the User Institution agrees to implement licensing policies that will not obstruct further research and to follow the U.S. National Institutes of Health Best Practices for the Licensing of Genomic Inventions (2005) (https://www.icgc.org/files/daco/NIH_BestPracticesLicensingGenomicInventions_2005_en.pdf ) in conformity with the Organisation for Economic Co-operation and Development Guidelines for the Licensing of the Genetic Inventions (2006) (http://www.oecd.org/science/biotech/36198812.pdf ). 11. The User Institution agrees to destroy/discard the Data held, once it is no longer used for the Project, unless obliged to retain the data for archival purposes in conformity with audit or legal requirements. 12. The User Institution will notify Prof. Tariq Enver within 30 days of any changes or departures of Authorised Personnel. 13. The User Institution will notify Prof. Tariq Enver prior to any significant changes to the protocol for the Project. 14. The User Institution will notify Prof. Tariq Enver as soon as it becomes aware of a breach of the terms or conditions of this agreement. 15. Prof. Tariq Enver may terminate this agreement by written notice to the User Institution. If this agreement terminates for any reason, the User Institution will be required to destroy any Data held, including copies and backup copies. This clause does not prevent the User Institution from retaining these data for archival purpose in conformity with audit or legal requirements. 16. The User Institution accepts that it may be necessary for the Data Producers to alter the terms of this agreement from time to time. As an example, this may include specific provisions relating to the Data required by Data Producers other than Prof. Tariq Enver. In the event that changes are required, the Data Producers or their appointed agent will contact the User Institution to inform it of the changes and the User Institution may elect to accept the changes or terminate the agreement. 17. If requested, the User Institution will allow data security and management documentation to be inspected to verify that it is complying with the terms of this agreement. 18. The User Institution agrees to distribute a copy of these terms to the Authorised Personnel. The User Institution will procure that the Authorised Personnel comply with the terms of this agreement. 19. This agreement (and any dispute, controversy, proceedings or claim of whatever nature arising out of this agreement or its formation) shall be construed, interpreted and governed by the laws of England and Wales and shall be subject to the exclusive jurisdiction of the English courts.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001004407 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00003681858 fastq.gz 1.9 GB
EGAF00003681859 fastq.gz 1.9 GB
EGAF00003681860 fastq.gz 1.1 GB
EGAF00003681861 fastq.gz 1.1 GB
EGAF00003681862 fastq.gz 967.8 MB
EGAF00003681863 fastq.gz 986.1 MB
EGAF00003681864 fastq.gz 1.8 GB
EGAF00003681865 fastq.gz 1.8 GB
EGAF00003681866 fastq.gz 1.4 GB
EGAF00003681867 fastq.gz 1.4 GB
EGAF00003681868 fastq.gz 1.3 GB
EGAF00003681869 fastq.gz 1.3 GB
EGAF00003681870 fastq.gz 1.7 GB
EGAF00003681871 fastq.gz 1.7 GB
EGAF00003681872 fastq.gz 1.6 GB
EGAF00003681873 fastq.gz 1.6 GB
EGAF00003681874 fastq.gz 1.8 GB
EGAF00003681875 fastq.gz 1.9 GB
EGAF00003681876 fastq.gz 713.2 MB
EGAF00003681877 fastq.gz 728.7 MB
EGAF00003681878 fastq.gz 1.9 GB
EGAF00003681879 fastq.gz 1.9 GB
EGAF00003681880 fastq.gz 1.3 GB
EGAF00003681881 fastq.gz 1.3 GB
EGAF00003681882 fastq.gz 973.6 MB
EGAF00003681883 fastq.gz 989.9 MB
EGAF00003681884 fastq.gz 1.4 GB
EGAF00003681885 fastq.gz 1.5 GB
EGAF00003681886 fastq.gz 980.6 MB
EGAF00003681887 fastq.gz 996.5 MB
EGAF00003681888 fastq.gz 1.6 GB
EGAF00003681889 fastq.gz 1.6 GB
EGAF00003681890 fastq.gz 1.3 GB
EGAF00003681891 fastq.gz 1.3 GB
EGAF00003681892 fastq.gz 1.7 GB
EGAF00003681893 fastq.gz 1.8 GB
EGAF00003681894 fastq.gz 1.1 GB
EGAF00003681895 fastq.gz 1.2 GB
EGAF00003681896 fastq.gz 941.3 MB
EGAF00003681897 fastq.gz 962.4 MB
EGAF00003681898 fastq.gz 1.8 GB
EGAF00003681899 fastq.gz 1.8 GB
EGAF00003681900 fastq.gz 1.8 GB
EGAF00003681901 fastq.gz 1.9 GB
EGAF00003681902 fastq.gz 1.5 GB
EGAF00003681903 fastq.gz 1.6 GB
EGAF00003681904 fastq.gz 698.2 MB
EGAF00003681905 fastq.gz 711.6 MB
EGAF00003681906 fastq.gz 1.2 GB
EGAF00003681907 fastq.gz 1.2 GB
EGAF00003681908 fastq.gz 1.5 GB
EGAF00003681909 fastq.gz 1.6 GB
EGAF00003681910 fastq.gz 1.6 GB
EGAF00003681911 fastq.gz 1.7 GB
EGAF00003681912 fastq.gz 1.8 GB
EGAF00003681913 fastq.gz 1.8 GB
EGAF00003681914 fastq.gz 1.6 GB
EGAF00003681915 fastq.gz 1.7 GB
EGAF00003681916 fastq.gz 1.3 GB
EGAF00003681917 fastq.gz 1.4 GB
EGAF00003681918 fastq.gz 1.3 GB
EGAF00003681919 fastq.gz 1.3 GB
EGAF00003681920 fastq.gz 1.2 GB
EGAF00003681921 fastq.gz 1.3 GB
EGAF00003681922 fastq.gz 836.6 MB
EGAF00003681923 fastq.gz 857.9 MB
EGAF00003681924 fastq.gz 1.2 GB
EGAF00003681925 fastq.gz 1.2 GB
EGAF00003681926 fastq.gz 1.4 GB
EGAF00003681927 fastq.gz 1.4 GB
EGAF00003681928 fastq.gz 883.5 MB
EGAF00003681929 fastq.gz 900.7 MB
EGAF00003681930 fastq.gz 869.4 MB
EGAF00003681931 fastq.gz 889.6 MB
EGAF00003681932 fastq.gz 1.9 GB
EGAF00003681933 fastq.gz 2.0 GB
EGAF00003681934 fastq.gz 1.7 GB
EGAF00003681935 fastq.gz 1.9 GB
EGAF00003681936 fastq.gz 1.0 GB
EGAF00003681937 fastq.gz 1.0 GB
EGAF00003681938 fastq.gz 2.1 GB
EGAF00003681939 fastq.gz 2.2 GB
EGAF00003681940 fastq.gz 1.2 GB
EGAF00003681941 fastq.gz 1.3 GB
EGAF00003681942 fastq.gz 1.3 GB
EGAF00003681943 fastq.gz 1.4 GB
EGAF00003681944 fastq.gz 1.4 GB
EGAF00003681945 fastq.gz 1.4 GB
EGAF00003681946 fastq.gz 1.2 GB
EGAF00003681947 fastq.gz 1.3 GB
EGAF00003681948 fastq.gz 1.2 GB
EGAF00003681949 fastq.gz 1.3 GB
EGAF00003681950 fastq.gz 1.4 GB
EGAF00003681951 fastq.gz 1.5 GB
EGAF00003681952 fastq.gz 1.7 GB
EGAF00003681953 fastq.gz 1.7 GB
EGAF00003681954 fastq.gz 1.6 GB
EGAF00003681955 fastq.gz 1.6 GB
EGAF00003681956 fastq.gz 1.4 GB
EGAF00003681957 fastq.gz 1.5 GB
EGAF00003681958 fastq.gz 1.3 GB
EGAF00003681959 fastq.gz 1.3 GB
EGAF00003681960 fastq.gz 1.4 GB
EGAF00003681961 fastq.gz 1.4 GB
EGAF00003681962 fastq.gz 1.9 GB
EGAF00003681963 fastq.gz 2.0 GB
EGAF00003681964 fastq.gz 537.5 MB
EGAF00003681965 fastq.gz 547.1 MB
EGAF00003681966 fastq.gz 1.2 GB
EGAF00003681967 fastq.gz 1.3 GB
EGAF00003681968 fastq.gz 1.4 GB
EGAF00003681969 fastq.gz 1.4 GB
EGAF00003681970 fastq.gz 1.0 GB
EGAF00003681971 fastq.gz 1.1 GB
EGAF00003681972 fastq.gz 1.6 GB
EGAF00003681973 fastq.gz 1.6 GB
EGAF00003681974 fastq.gz 1.8 GB
EGAF00003681975 fastq.gz 1.8 GB
EGAF00003681976 fastq.gz 1.2 GB
EGAF00003681977 fastq.gz 1.2 GB
EGAF00003681978 fastq.gz 1.5 GB
EGAF00003681979 fastq.gz 1.6 GB
EGAF00003681980 fastq.gz 1.5 GB
EGAF00003681981 fastq.gz 1.5 GB
EGAF00003681982 fastq.gz 1.4 GB
EGAF00003681983 fastq.gz 1.5 GB
EGAF00003681984 fastq.gz 1.7 GB
EGAF00003681985 fastq.gz 1.7 GB
EGAF00003681986 fastq.gz 768.3 MB
EGAF00003681987 fastq.gz 782.0 MB
EGAF00003681988 fastq.gz 1.1 GB
EGAF00003681989 fastq.gz 1.1 GB
EGAF00003681990 fastq.gz 1.0 GB
EGAF00003681991 fastq.gz 1.1 GB
EGAF00003681992 fastq.gz 1.1 GB
EGAF00003681993 fastq.gz 1.2 GB
EGAF00003681994 fastq.gz 1.5 GB
EGAF00003681995 fastq.gz 1.6 GB
EGAF00003681996 fastq.gz 788.1 MB
EGAF00003681997 fastq.gz 803.9 MB
EGAF00003681998 fastq.gz 1.2 GB
EGAF00003681999 fastq.gz 1.3 GB
EGAF00003682000 fastq.gz 1.4 GB
EGAF00003682001 fastq.gz 1.5 GB
EGAF00003682002 fastq.gz 938.2 MB
EGAF00003682003 fastq.gz 955.9 MB
EGAF00003682076 fastq.gz 1.0 GB
EGAF00003682077 fastq.gz 1.0 GB
148 Files (202.4 GB)