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smMIP-seq of 18 FFPE prostate samples (normal and tumour pairs) to identify mutations

smMIP-Seq was performed on radical prostatectomy formalin-fixed paraffin-embedded sample pairs (n = 18). Library prep was done by capture of targeted sequences with single molecule (unique molecular index) tagged molecular inversion probes (MIP) and sequenced as 75bp paired end on Illumina NextSeq 500. Sequences were aligned to the human genome (hg38) using BWA.

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Multimodal pathology NDS Oxford DAC

Investigators who download restricted data from this dataset should: - Not attempt to identify individual human research participants from whom the data were obtained. - Acknowledge in all oral or written presentations, disclosures, or publications the specific dataset(s) or applicable accession number(s)and the repositories through which the investigator accessed any data. Any user requesting access to this data must apply for authorization, which is granted by the Multimodal pathology NDS Oxford Data Access Committee (DAC). The DAC will review and approve or disapprove all requests from the research community for data access. Decisions to grant access are made based on whether the request conforms to the specifications of the Research Ethics Committee approval and program specific requirements or procedures (if any).

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
Cancer Genomics

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00003620518 cram 7.3 MB
EGAF00003620519 cram 789.3 kB
EGAF00003620520 cram 7.3 MB
EGAF00003620521 cram 8.9 MB
EGAF00003620522 cram 9.0 MB
EGAF00003620523 cram 1.5 MB
EGAF00003620524 cram 3.6 MB
EGAF00003620525 cram 10.1 MB
EGAF00003620526 cram 10.8 MB
EGAF00003620527 cram 651.8 kB
EGAF00003620528 cram 1.9 MB
EGAF00003620529 cram 3.5 MB
EGAF00003620530 cram 1.2 MB
EGAF00003620531 cram 4.0 MB
EGAF00003620532 cram 4.0 MB
EGAF00003620533 cram 10.2 MB
EGAF00003620534 cram 8.6 MB
EGAF00003620535 cram 14.9 MB
EGAF00003620536 cram 5.1 MB
EGAF00003620537 cram 16.5 MB
EGAF00003620538 cram 5.5 MB
EGAF00003620539 cram 16.8 MB
EGAF00003620540 cram 10.9 MB
EGAF00003620541 cram 12.3 MB
EGAF00003620542 cram 7.9 MB
EGAF00003620543 cram 7.3 MB
EGAF00003620544 cram 2.4 MB
EGAF00003620545 cram 4.2 MB
EGAF00003620546 cram 3.7 MB
EGAF00003620547 cram 3.9 MB
EGAF00003620548 cram 10.2 MB
EGAF00003620549 cram 3.3 MB
EGAF00003620550 cram 10.2 MB
EGAF00003620551 cram 8.5 MB
EGAF00003620552 cram 15.3 MB
EGAF00003620553 cram 13.1 MB
36 Files (265.2 MB)