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RNA-seq of 27 FFPE prostate samples (tumour only) to identify gene fusions

RNA-Seq was performed on radical prostatectomy formalin-fixed paraffin-embedded sample pairs (n = 27). Library prep was done by removal of rRNA and sequenced as 75bp paired end on Illumina NextSeq 500. Sequences were aligned to the human genome (hg38) using STAR-Fusion.

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Multimodal pathology NDS Oxford DAC

Investigators who download restricted data from this dataset should: - Not attempt to identify individual human research participants from whom the data were obtained. - Acknowledge in all oral or written presentations, disclosures, or publications the specific dataset(s) or applicable accession number(s)and the repositories through which the investigator accessed any data. Any user requesting access to this data must apply for authorization, which is granted by the Multimodal pathology NDS Oxford Data Access Committee (DAC). The DAC will review and approve or disapprove all requests from the research community for data access. Decisions to grant access are made based on whether the request conforms to the specifications of the Research Ethics Committee approval and program specific requirements or procedures (if any).

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
Cancer Genomics

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00003620491 cram 16.3 MB
EGAF00003620492 cram 17.4 MB
EGAF00003620493 cram 20.2 MB
EGAF00003620494 cram 16.7 MB
EGAF00003620495 cram 14.5 MB
EGAF00003620496 cram 16.9 MB
EGAF00003620497 cram 17.5 MB
EGAF00003620498 cram 19.3 MB
EGAF00003620499 cram 14.1 MB
EGAF00003620500 cram 18.7 MB
EGAF00003620501 cram 19.2 MB
EGAF00003620502 cram 14.4 MB
EGAF00003620503 cram 21.0 MB
EGAF00003620504 cram 26.4 MB
EGAF00003620505 cram 24.2 MB
EGAF00003620506 cram 20.6 MB
EGAF00003620507 cram 44.1 MB
EGAF00003620508 cram 21.4 MB
EGAF00003620509 cram 16.4 MB
EGAF00003620510 cram 10.8 MB
EGAF00003620511 cram 21.6 MB
EGAF00003620512 cram 18.5 MB
EGAF00003620513 cram 17.8 MB
EGAF00003620514 cram 18.5 MB
EGAF00003620515 cram 21.9 MB
EGAF00003620516 cram 23.2 MB
EGAF00003620517 cram 14.5 MB
27 Files (526.2 MB)