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sWGS of CRC patients

Paired end (47/98) and single end (51/98) shallow whole genome sequencing (sWGS) data for the identification of somatic copy number alterations (SCNA) and the estimation of tumor fractions in plasma DNA of colorectal cancer (CRC) patients.

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CTC - Plasma-DNA - MONDO:0005575

European Genome-Phenome Archivec/o European Bioinformatics InstituteWellcome Trust Genome CampusHinxtonCambridgeCB10 1SDUnited KingdomTo whom it may concern,This document refers to the study EGAS00001000337 which has been submitted to the European Genome Archive (EGA) for the restricted access by legitimate academic institutions that have agreed to comply with the terms of a Data Access Agreement drafted by Ellen Heitzer.There are a number of steps that a researcher must take to obtain access to this data and the process is overseen by Ellen HeitzerEllen Heitzer is a Postdoctoral Fellow and is authorized to approve researchers to have encrypted access to the data submitted to the EGA. Please be advised that Ellen Heitzer (ellen.heitzer@medunigraz.at) is authorized to upload data to the EGA for archiving and distribution as part of your submission process, which will enable approved researchers to have encrypted access to the data. We can confirm that this submission is consistent with the informed consent of the participants of the study or has been granted ethical approval and is in accordance with the applicable laws and regulations.Sincerely,Michael R. SpeicherPrinciple Investigator

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00003491306 fastq.gz 431.4 MB
EGAF00003491307 fastq.gz 432.5 MB
EGAF00003491308 fastq.gz 534.4 MB
EGAF00003491309 fastq.gz 531.9 MB
EGAF00003491310 fastq.gz 560.7 MB
EGAF00003491311 fastq.gz 578.7 MB
EGAF00003491312 fastq.gz 541.0 MB
EGAF00003491313 fastq.gz 537.2 MB
EGAF00003491314 fastq.gz 547.6 MB
EGAF00003491315 fastq.gz 549.9 MB
EGAF00003491316 fastq.gz 536.7 MB
EGAF00003491317 fastq.gz 549.3 MB
EGAF00003491318 fastq.gz 502.6 MB
EGAF00003491319 fastq.gz 500.9 MB
EGAF00003491320 fastq.gz 542.2 MB
EGAF00003491321 fastq.gz 541.7 MB
EGAF00003491322 fastq.gz 523.1 MB
EGAF00003491323 fastq.gz 539.0 MB
EGAF00003491324 fastq.gz 278.0 MB
EGAF00003491325 fastq.gz 306.3 MB
EGAF00003491326 fastq.gz 187.2 MB
EGAF00003491327 fastq.gz 188.5 MB
EGAF00003491328 fastq.gz 196.0 MB
EGAF00003491329 fastq.gz 198.0 MB
EGAF00003491330 fastq.gz 171.3 MB
EGAF00003491331 fastq.gz 173.9 MB
EGAF00003491332 fastq.gz 172.7 MB
EGAF00003491333 fastq.gz 174.4 MB
EGAF00003491334 fastq.gz 203.3 MB
EGAF00003491335 fastq.gz 204.7 MB
EGAF00003491336 fastq.gz 206.0 MB
EGAF00003491337 fastq.gz 211.2 MB
EGAF00003491338 fastq.gz 195.5 MB
EGAF00003491339 fastq.gz 198.6 MB
EGAF00003491340 fastq.gz 194.7 MB
EGAF00003491341 fastq.gz 195.7 MB
EGAF00003491342 fastq.gz 291.1 MB
EGAF00003491343 fastq.gz 293.5 MB
EGAF00003491344 fastq.gz 350.6 MB
EGAF00003491345 fastq.gz 357.5 MB
EGAF00003491346 fastq.gz 388.9 MB
EGAF00003491347 fastq.gz 389.9 MB
EGAF00003491348 fastq.gz 324.2 MB
EGAF00003491349 fastq.gz 327.4 MB
EGAF00003491350 fastq.gz 334.7 MB
EGAF00003491351 fastq.gz 337.4 MB
EGAF00003491352 fastq.gz 381.7 MB
EGAF00003491353 fastq.gz 382.1 MB
EGAF00003491354 fastq.gz 345.2 MB
EGAF00003491355 fastq.gz 348.5 MB
EGAF00003491356 fastq.gz 391.8 MB
EGAF00003491357 fastq.gz 396.1 MB
EGAF00003491358 fastq.gz 368.5 MB
EGAF00003491359 fastq.gz 371.4 MB
EGAF00003491360 fastq.gz 291.6 MB
EGAF00003491361 fastq.gz 333.1 MB
EGAF00003491362 fastq.gz 574.2 MB
EGAF00003491363 fastq.gz 572.2 MB
EGAF00003491364 fastq.gz 323.3 MB
EGAF00003491365 fastq.gz 362.1 MB
EGAF00003491366 fastq.gz 430.7 MB
EGAF00003491367 fastq.gz 433.1 MB
EGAF00003491368 fastq.gz 583.5 MB
EGAF00003491369 fastq.gz 580.8 MB
EGAF00003491370 fastq.gz 567.5 MB
EGAF00003491371 fastq.gz 577.0 MB
EGAF00003491372 fastq.gz 302.7 MB
EGAF00003491373 fastq.gz 341.5 MB
EGAF00003491374 fastq.gz 306.7 MB
EGAF00003491375 fastq.gz 343.7 MB
EGAF00003491376 fastq.gz 302.1 MB
EGAF00003491377 fastq.gz 344.1 MB
EGAF00003491378 fastq.gz 293.7 MB
EGAF00003491379 fastq.gz 332.2 MB
EGAF00003491380 fastq.gz 201.6 MB
EGAF00003491381 fastq.gz 222.9 MB
EGAF00003491382 fastq.gz 230.7 MB
EGAF00003491383 fastq.gz 255.7 MB
EGAF00003491384 fastq.gz 190.8 MB
EGAF00003491385 fastq.gz 192.3 MB
EGAF00003491386 fastq.gz 186.0 MB
EGAF00003491387 fastq.gz 202.1 MB
EGAF00003491388 fastq.gz 194.7 MB
EGAF00003491389 fastq.gz 203.4 MB
EGAF00003491390 fastq.gz 172.8 MB
EGAF00003491391 fastq.gz 174.6 MB
EGAF00003491392 fastq.gz 130.5 MB
EGAF00003491393 fastq.gz 176.2 MB
EGAF00003491394 fastq.gz 170.4 MB
EGAF00003491395 fastq.gz 171.9 MB
EGAF00003491396 fastq.gz 175.7 MB
EGAF00003491397 fastq.gz 176.9 MB
EGAF00003491398 fastq.gz 176.5 MB
EGAF00003491399 fastq.gz 177.9 MB
EGAF00003491552 fastq.gz 400.2 MB
EGAF00003491553 fastq.gz 917.1 MB
EGAF00003491554 fastq.gz 903.1 MB
EGAF00003491555 fastq.gz 352.8 MB
EGAF00003491556 fastq.gz 1.1 GB
99 Files (35.1 GB)