The effect of blood tube and time delay on the genome-wide methylation pattern of cfDNA
In this study, we evaluated the effect of preservation agens on the effect of the methylation pattern of cell-free DNA. The methylation pattern was assessed with cell-free reduced representation sequencing (cf-RRBS). All 45 samples were sequenced on a NovaSeq6000, and samples are provided as raw fastq files.
- 45 samples
- DAC: EGAC00001001507
- Technology: Illumina NovaSeq 6000
DAC for the Center of Medical Genetics Gent.
Data requests are handled by the Center for Medical Genetics Gent and the legal department of Ghent University. A data-transfer agreement will have to be signed in order for the data to be transferred.
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| EGAS00001004271 | Other |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Located in | |
|---|---|---|---|---|
| EGAF00003471653 | fastq.gz | 875.3 MB | ||
| EGAF00003471654 | fastq.gz | 890.6 MB | ||
| EGAF00003471655 | fastq.gz | 886.0 MB | ||
| EGAF00003471656 | fastq.gz | 914.9 MB | ||
| EGAF00003471657 | fastq.gz | 768.7 MB | ||
| EGAF00003471658 | fastq.gz | 819.0 MB | ||
| EGAF00003471659 | fastq.gz | 868.3 MB | ||
| EGAF00003471660 | fastq.gz | 872.1 MB | ||
| EGAF00003471661 | fastq.gz | 828.9 MB | ||
| EGAF00003471662 | fastq.gz | 884.8 MB | ||
| EGAF00003471663 | fastq.gz | 793.4 MB | ||
| EGAF00003471664 | fastq.gz | 830.0 MB | ||
| EGAF00003471665 | fastq.gz | 753.1 MB | ||
| EGAF00003471666 | fastq.gz | 785.1 MB | ||
| EGAF00003471667 | fastq.gz | 945.0 MB | ||
| EGAF00003471668 | fastq.gz | 1.0 GB | ||
| EGAF00003471669 | fastq.gz | 883.1 MB | ||
| EGAF00003471670 | fastq.gz | 930.7 MB | ||
| EGAF00003471671 | fastq.gz | 617.1 MB | ||
| EGAF00003471672 | fastq.gz | 643.5 MB | ||
| EGAF00003471673 | fastq.gz | 655.3 MB | ||
| EGAF00003471674 | fastq.gz | 709.7 MB | ||
| EGAF00003471675 | fastq.gz | 687.8 MB | ||
| EGAF00003471676 | fastq.gz | 718.7 MB | ||
| EGAF00003471677 | fastq.gz | 506.5 MB | ||
| EGAF00003471678 | fastq.gz | 527.6 MB | ||
| EGAF00003471679 | fastq.gz | 578.2 MB | ||
| EGAF00003471680 | fastq.gz | 603.9 MB | ||
| EGAF00003471681 | fastq.gz | 663.8 MB | ||
| EGAF00003471682 | fastq.gz | 673.1 MB | ||
| EGAF00003471683 | fastq.gz | 615.5 MB | ||
| EGAF00003471684 | fastq.gz | 636.9 MB | ||
| EGAF00003471685 | fastq.gz | 535.1 MB | ||
| EGAF00003471686 | fastq.gz | 550.9 MB | ||
| EGAF00003471687 | fastq.gz | 553.6 MB | ||
| EGAF00003471688 | fastq.gz | 587.4 MB | ||
| EGAF00003471689 | fastq.gz | 588.5 MB | ||
| EGAF00003471690 | fastq.gz | 598.6 MB | ||
| EGAF00003471691 | fastq.gz | 547.9 MB | ||
| EGAF00003471692 | fastq.gz | 587.5 MB | ||
| EGAF00003471693 | fastq.gz | 484.3 MB | ||
| EGAF00003471694 | fastq.gz | 494.1 MB | ||
| EGAF00003471695 | fastq.gz | 1.2 GB | ||
| EGAF00003471696 | fastq.gz | 1.3 GB | ||
| EGAF00003471697 | fastq.gz | 594.7 MB | ||
| EGAF00003471698 | fastq.gz | 586.9 MB | ||
| EGAF00003471699 | fastq.gz | 587.8 MB | ||
| EGAF00003471700 | fastq.gz | 595.5 MB | ||
| EGAF00003471701 | fastq.gz | 536.0 MB | ||
| EGAF00003471702 | fastq.gz | 553.7 MB | ||
| EGAF00003471703 | fastq.gz | 441.3 MB | ||
| EGAF00003471704 | fastq.gz | 464.0 MB | ||
| EGAF00003471705 | fastq.gz | 859.8 MB | ||
| EGAF00003471706 | fastq.gz | 879.9 MB | ||
| EGAF00003471707 | fastq.gz | 598.6 MB | ||
| EGAF00003471708 | fastq.gz | 622.1 MB | ||
| EGAF00003471709 | fastq.gz | 795.4 MB | ||
| EGAF00003471710 | fastq.gz | 782.3 MB | ||
| EGAF00003471711 | fastq.gz | 983.8 MB | ||
| EGAF00003471712 | fastq.gz | 1.0 GB | ||
| EGAF00003471713 | fastq.gz | 919.4 MB | ||
| EGAF00003471714 | fastq.gz | 995.0 MB | ||
| EGAF00003471715 | fastq.gz | 750.4 MB | ||
| EGAF00003471716 | fastq.gz | 753.3 MB | ||
| EGAF00003471717 | fastq.gz | 694.2 MB | ||
| EGAF00003471718 | fastq.gz | 710.4 MB | ||
| EGAF00003471719 | fastq.gz | 950.0 MB | ||
| EGAF00003471720 | fastq.gz | 977.5 MB | ||
| EGAF00003471721 | fastq.gz | 1.0 GB | ||
| EGAF00003471722 | fastq.gz | 1.1 GB | ||
| EGAF00003471723 | fastq.gz | 809.5 MB | ||
| EGAF00003471724 | fastq.gz | 825.8 MB | ||
| EGAF00003471725 | fastq.gz | 839.5 MB | ||
| EGAF00003471726 | fastq.gz | 850.4 MB | ||
| EGAF00003471727 | fastq.gz | 881.7 MB | ||
| EGAF00003471728 | fastq.gz | 927.3 MB | ||
| EGAF00003471729 | fastq.gz | 874.9 MB | ||
| EGAF00003471730 | fastq.gz | 924.2 MB | ||
| EGAF00003471731 | fastq.gz | 762.3 MB | ||
| EGAF00003471732 | fastq.gz | 783.2 MB | ||
| EGAF00003471733 | fastq.gz | 988.2 MB | ||
| EGAF00003471734 | fastq.gz | 1.0 GB | ||
| EGAF00003471735 | fastq.gz | 970.2 MB | ||
| EGAF00003471736 | fastq.gz | 992.4 MB | ||
| EGAF00003471737 | fastq.gz | 663.7 MB | ||
| EGAF00003471738 | fastq.gz | 684.0 MB | ||
| EGAF00003471739 | fastq.gz | 699.3 MB | ||
| EGAF00003471740 | fastq.gz | 737.3 MB | ||
| EGAF00003471741 | fastq.gz | 620.1 MB | ||
| EGAF00003471742 | fastq.gz | 656.0 MB | ||
| 90 Files (68.7 GB) | ||||