RNA sequencing of CD8 T cells from melanoma patients prior to and during checkpoint immunotherapy and untreated healthy controls
RNA sequencing of CD8 T cells from melanoma patients prior to and during checkpoint immunotherapy and untreated healthy controls
- 14/02/2020
- 297 samples
- DAC: EGAC00001001482
- Technology: Illumina HiSeq 4000
These data correspond to samples used in the paper: Peripheral CD8+ T cell characteristics associated with durable responses to immune checkpoint blockade in patients with metastatic melanoma, Fairfax et al, 2020, Nature Medicine. They are the raw RNA sequencing files as used in all downstream analysis.
All sequencing data will be made freely available to organizations and researchers to conduct research in accordance with the UK Policy Framework for Health and Social Care Research via a data access agreement. Users will need to complete a standard University of Oxford data transfer agreement which can be provided by either Benjamin Fairfax or Isar Nassiri upon application.
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| EGAS00001004081 | Other |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Quality Report |
Located in
i
|
|---|---|---|---|---|
| EGAF00003446136 | bam | 2.0 GB |
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| EGAF00003446137 | bam | 1.9 GB |
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| EGAF00003446138 | bam | 2.2 GB |
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| EGAF00003446139 | bam | 260.2 MB |
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| EGAF00003446140 | bam | 1.8 GB |
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| EGAF00003446141 | bam | 1.6 GB |
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| EGAF00003446142 | bam | 1.6 GB |
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| EGAF00003446143 | bam | 1.9 GB |
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| EGAF00003446144 | bam | 2.0 GB |
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| EGAF00003446145 | bam | 1.9 GB |
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| EGAF00003446146 | bam | 2.3 GB |
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| EGAF00003446147 | bam | 1.8 GB |
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| EGAF00003446148 | bam | 1.2 GB |
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| EGAF00003446149 | bam | 1.9 GB |
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| EGAF00003446150 | bam | 982.8 MB |
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| EGAF00003446151 | bam | 1.6 GB |
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| EGAF00003446152 | bam | 2.2 GB |
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| EGAF00003446153 | bam | 2.0 GB |
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| EGAF00003446154 | bam | 2.0 GB |
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| EGAF00003446155 | bam | 1.9 GB |
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| EGAF00003446156 | bam | 1.6 GB |
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| EGAF00003446157 | bam | 1.8 GB |
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| EGAF00003446158 | bam | 1.9 GB |
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| EGAF00003446159 | bam | 2.1 GB |
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| EGAF00003446160 | bam | 1.7 GB |
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| EGAF00003446161 | bam | 2.0 GB |
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| EGAF00003446162 | bam | 1.9 GB |
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| EGAF00003446163 | bam | 2.0 GB |
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| EGAF00003446164 | bam | 2.1 GB |
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| EGAF00003446165 | bam | 1.8 GB |
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| EGAF00003446166 | bam | 1.6 GB |
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| EGAF00003446167 | bam | 1.9 GB |
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| EGAF00003446168 | bam | 2.1 GB |
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| EGAF00003446169 | bam | 1.9 GB |
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| EGAF00003446170 | bam | 2.5 GB |
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| EGAF00003446171 | bam | 2.1 GB |
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| EGAF00003446172 | bam | 2.0 GB |
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| EGAF00003446173 | bam | 2.0 GB |
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| EGAF00003446174 | bam | 1.4 GB |
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| EGAF00003446175 | bam | 2.2 GB |
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| EGAF00003446176 | bam | 1.7 GB |
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| EGAF00003446177 | bam | 1.8 GB |
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| EGAF00003446178 | bam | 2.0 GB |
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| EGAF00003446179 | bam | 1.8 GB |
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| EGAF00003446180 | bam | 1.4 GB |
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| EGAF00003446181 | bam | 1.8 GB |
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| EGAF00003446182 | bam | 2.2 GB |
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| EGAF00003446183 | bam | 1.8 GB |
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| EGAF00003446184 | bam | 1.1 GB |
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| EGAF00003446185 | bam | 2.0 GB |
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| EGAF00003446186 | bam | 1.8 GB |
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| EGAF00003446187 | bam | 2.1 GB |
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| EGAF00003446188 | bam | 1.9 GB |
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| EGAF00003446189 | bam | 1.6 GB |
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| EGAF00003446190 | bam | 2.2 GB |
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| EGAF00003446191 | bam | 2.2 GB |
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| EGAF00003446192 | bam | 1.8 GB |
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| EGAF00003446193 | bam | 2.1 GB |
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| EGAF00003446194 | bam | 2.0 GB |
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| EGAF00003446195 | bam | 2.2 GB |
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| EGAF00003446196 | bam | 2.2 GB |
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| EGAF00003446197 | bam | 2.2 GB |
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| EGAF00003446198 | bam | 2.1 GB |
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| EGAF00003446199 | bam | 2.0 GB |
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| EGAF00003446200 | bam | 2.3 GB |
|
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| EGAF00003446201 | bam | 2.3 GB |
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|
| EGAF00003446202 | bam | 2.2 GB |
|
|
| EGAF00003446203 | bam | 2.0 GB |
|
|
| EGAF00003446204 | bam | 2.1 GB |
|
|
| EGAF00003446205 | bam | 2.1 GB |
|
|
| EGAF00003446206 | bam | 2.2 GB |
|
|
| EGAF00003446207 | bam | 2.0 GB |
|
|
| EGAF00003446208 | bam | 2.1 GB |
|
|
| EGAF00003446209 | bam | 2.1 GB |
|
|
| EGAF00003446210 | bam | 2.1 GB |
|
|
| EGAF00003446211 | bam | 2.0 GB |
|
|
| EGAF00003446212 | bam | 1.6 GB |
|
|
| EGAF00003446213 | bam | 1.9 GB |
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|
| EGAF00003446214 | bam | 1.9 GB |
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| EGAF00003446215 | bam | 2.1 GB |
|
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| EGAF00003446216 | bam | 2.1 GB |
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| EGAF00003446217 | bam | 2.2 GB |
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| EGAF00003446218 | bam | 2.0 GB |
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| EGAF00003446219 | bam | 2.0 GB |
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| EGAF00003446220 | bam | 1.7 GB |
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| EGAF00003446221 | bam | 2.0 GB |
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| EGAF00003446222 | bam | 2.1 GB |
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| EGAF00003446223 | bam | 2.2 GB |
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| EGAF00003446224 | bam | 2.1 GB |
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| EGAF00003446225 | bam | 2.0 GB |
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| EGAF00003446226 | bam | 2.1 GB |
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| EGAF00003446227 | bam | 2.0 GB |
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| EGAF00003446228 | bam | 2.1 GB |
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| EGAF00003446229 | bam | 2.3 GB |
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| EGAF00003446230 | bam | 3.2 GB |
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| EGAF00003446231 | bam | 2.1 GB |
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| EGAF00003446232 | bam | 2.1 GB |
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| EGAF00003446233 | bam | 2.1 GB |
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| EGAF00003446234 | bam | 1.7 GB |
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| EGAF00003446235 | bam | 1.0 GB |
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| EGAF00003446236 | bam | 2.1 GB |
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| EGAF00003446237 | bam | 1.6 GB |
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| EGAF00003446238 | bam | 1.7 GB |
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| EGAF00003446239 | bam | 1.6 GB |
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| EGAF00003446240 | bam | 2.4 GB |
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| EGAF00003446241 | bam | 4.0 GB |
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| EGAF00003446242 | bam | 2.1 GB |
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| EGAF00003446243 | bam | 2.2 GB |
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| EGAF00003446244 | bam | 2.2 GB |
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| EGAF00003446245 | bam | 2.3 GB |
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| EGAF00003446246 | bam | 2.3 GB |
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| EGAF00003446247 | bam | 2.2 GB |
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| EGAF00003446248 | bam | 2.2 GB |
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| EGAF00003446249 | bam | 2.1 GB |
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| EGAF00003446250 | bam | 2.1 GB |
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| EGAF00003446251 | bam | 2.7 GB |
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| EGAF00003446252 | bam | 1.6 GB |
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| EGAF00003446253 | bam | 2.5 GB |
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| EGAF00003446254 | bam | 2.3 GB |
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| EGAF00003446255 | bam | 2.2 GB |
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| EGAF00003446256 | bam | 2.3 GB |
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| EGAF00003446257 | bam | 2.2 GB |
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| EGAF00003446258 | bam | 2.1 GB |
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| EGAF00003446259 | bam | 4.2 GB |
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| EGAF00003446260 | bam | 2.2 GB |
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| EGAF00003446261 | bam | 2.4 GB |
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| EGAF00003446262 | bam | 5.2 GB |
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| EGAF00003446263 | bam | 2.6 GB |
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| EGAF00003446264 | bam | 2.1 GB |
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| EGAF00003446265 | bam | 2.5 GB |
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| EGAF00003446266 | bam | 2.1 GB |
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| EGAF00003446267 | bam | 1.8 GB |
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| EGAF00003446268 | bam | 1.9 GB |
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| EGAF00003446269 | bam | 2.1 GB |
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| EGAF00003446270 | bam | 2.1 GB |
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| EGAF00003446271 | bam | 2.3 GB |
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| EGAF00003446272 | bam | 2.4 GB |
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| EGAF00003446273 | bam | 4.1 GB |
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| EGAF00003446274 | bam | 5.1 GB |
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| EGAF00003446275 | bam | 4.3 GB |
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| EGAF00003446276 | bam | 1.9 GB |
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| EGAF00003446277 | bam | 2.0 GB |
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| EGAF00003446278 | bam | 1.8 GB |
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| EGAF00003446279 | bam | 2.2 GB |
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| EGAF00003446280 | bam | 2.3 GB |
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| EGAF00003446281 | bam | 2.3 GB |
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| EGAF00003446282 | bam | 2.5 GB |
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| EGAF00003446283 | bam | 1.8 GB |
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| EGAF00003446284 | bam | 1.7 GB |
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| EGAF00003446285 | bam | 1.5 GB |
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| EGAF00003446286 | bam | 2.2 GB |
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| EGAF00003446287 | bam | 2.0 GB |
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| EGAF00003446288 | bam | 2.1 GB |
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| EGAF00003446289 | bam | 2.2 GB |
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| EGAF00003446290 | bam | 2.2 GB |
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| EGAF00003446291 | bam | 1.7 GB |
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| EGAF00003446292 | bam | 1.9 GB |
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| EGAF00003446293 | bam | 2.5 GB |
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| EGAF00003446294 | bam | 2.5 GB |
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| EGAF00003446295 | bam | 2.1 GB |
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| EGAF00003446296 | bam | 2.3 GB |
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| EGAF00003446297 | bam | 2.4 GB |
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| EGAF00003446298 | bam | 2.3 GB |
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| EGAF00003446299 | bam | 2.5 GB |
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| EGAF00003446300 | bam | 1.7 GB |
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| EGAF00003446301 | bam | 4.2 GB |
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| EGAF00003446302 | bam | 2.2 GB |
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| EGAF00003446303 | bam | 4.6 GB |
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| EGAF00003446304 | bam | 1.9 GB |
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| EGAF00003446305 | bam | 1.9 GB |
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| EGAF00003446306 | bam | 3.7 GB |
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| EGAF00003446307 | bam | 2.0 GB |
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| EGAF00003446308 | bam | 2.0 GB |
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| EGAF00003446309 | bam | 4.2 GB |
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| EGAF00003446310 | bam | 2.3 GB |
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| EGAF00003446311 | bam | 2.2 GB |
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| EGAF00003446312 | bam | 4.3 GB |
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| EGAF00003446313 | bam | 4.3 GB |
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| EGAF00003446314 | bam | 4.6 GB |
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| EGAF00003446315 | bam | 2.9 GB |
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| EGAF00003446316 | bam | 4.5 GB |
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| EGAF00003446317 | bam | 3.9 GB |
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| EGAF00003446318 | bam | 4.3 GB |
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| EGAF00003446319 | bam | 4.1 GB |
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| EGAF00003446320 | bam | 3.5 GB |
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| EGAF00003446321 | bam | 4.1 GB |
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| EGAF00003446322 | bam | 4.5 GB |
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| EGAF00003446323 | bam | 4.6 GB |
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| EGAF00003446324 | bam | 4.2 GB |
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| EGAF00003446325 | bam | 4.6 GB |
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| EGAF00003446326 | bam | 4.0 GB |
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| EGAF00003446327 | bam | 4.5 GB |
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| EGAF00003446328 | bam | 4.3 GB |
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| EGAF00003446329 | bam | 4.1 GB |
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| EGAF00003446330 | bam | 4.4 GB |
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| EGAF00003446331 | bam | 4.7 GB |
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| EGAF00003446332 | bam | 4.6 GB |
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| EGAF00003446333 | bam | 4.7 GB |
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| EGAF00003446334 | bam | 4.7 GB |
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| EGAF00003446335 | bam | 3.9 GB |
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| EGAF00003446336 | bam | 4.4 GB |
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| EGAF00003446337 | bam | 3.3 GB |
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| EGAF00003446338 | bam | 4.2 GB |
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| EGAF00003446339 | bam | 4.1 GB |
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| EGAF00003446340 | bam | 4.2 GB |
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| EGAF00003446341 | bam | 4.2 GB |
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| EGAF00003446342 | bam | 5.5 GB |
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|
| EGAF00003446343 | bam | 4.9 GB |
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| EGAF00003446344 | bam | 6.3 GB |
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|
| EGAF00003446345 | bam | 4.2 GB |
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| EGAF00003446346 | bam | 4.5 GB |
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| EGAF00003446347 | bam | 4.3 GB |
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| EGAF00003446348 | bam | 4.0 GB |
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| EGAF00003446349 | bam | 4.6 GB |
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| EGAF00003446350 | bam | 3.3 GB |
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| EGAF00003446351 | bam | 4.3 GB |
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| EGAF00003446352 | bam | 4.2 GB |
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| EGAF00003446353 | bam | 4.6 GB |
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| EGAF00003446354 | bam | 4.7 GB |
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| EGAF00003446355 | bam | 4.9 GB |
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| EGAF00003446356 | bam | 4.2 GB |
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| EGAF00003446357 | bam | 4.2 GB |
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| EGAF00003446358 | bam | 4.2 GB |
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| EGAF00003446359 | bam | 4.5 GB |
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| EGAF00003446360 | bam | 4.7 GB |
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| EGAF00003446361 | bam | 4.5 GB |
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| EGAF00003446362 | bam | 5.1 GB |
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| EGAF00003446363 | bam | 4.4 GB |
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| EGAF00003446364 | bam | 3.9 GB |
|
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| EGAF00003446365 | bam | 2.1 GB |
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| EGAF00003446366 | bam | 1.8 GB |
|
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| EGAF00003446367 | bam | 1.9 GB |
|
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| EGAF00003446368 | bam | 1.9 GB |
|
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| EGAF00003446369 | bam | 1.5 GB |
|
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| EGAF00003446370 | bam | 1.9 GB |
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| EGAF00003446371 | bam | 2.0 GB |
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| EGAF00003446372 | bam | 2.0 GB |
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| EGAF00003446373 | bam | 2.4 GB |
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| EGAF00003446374 | bam | 1.9 GB |
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| EGAF00003446375 | bam | 2.2 GB |
|
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| EGAF00003446376 | bam | 2.1 GB |
|
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| EGAF00003446377 | bam | 2.1 GB |
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| EGAF00003446378 | bam | 2.0 GB |
|
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| EGAF00003446379 | bam | 2.1 GB |
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| EGAF00003446380 | bam | 2.1 GB |
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| EGAF00003446381 | bam | 4.8 GB |
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| EGAF00003446382 | bam | 4.1 GB |
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| EGAF00003446383 | bam | 4.4 GB |
|
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| EGAF00003446384 | bam | 4.2 GB |
|
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| EGAF00003446385 | bam | 4.1 GB |
|
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| EGAF00003446386 | bam | 4.8 GB |
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| EGAF00003446387 | bam | 4.3 GB |
|
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| EGAF00003446388 | bam | 4.3 GB |
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| EGAF00003446389 | bam | 4.4 GB |
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| EGAF00003446390 | bam | 4.5 GB |
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| EGAF00003446391 | bam | 4.6 GB |
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| EGAF00003446392 | bam | 4.2 GB |
|
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| EGAF00003446393 | bam | 1.7 GB |
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| EGAF00003446394 | bam | 4.0 GB |
|
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| EGAF00003446395 | bam | 4.8 GB |
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| EGAF00003446396 | bam | 4.4 GB |
|
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| EGAF00003446397 | bam | 4.5 GB |
|
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| EGAF00003446398 | bam | 4.2 GB |
|
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| EGAF00003446399 | bam | 4.4 GB |
|
|
| EGAF00003446400 | bam | 5.9 GB |
|
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| EGAF00003446401 | bam | 4.9 GB |
|
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| EGAF00003446402 | bam | 4.3 GB |
|
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| EGAF00003446403 | bam | 4.8 GB |
|
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| EGAF00003446404 | bam | 2.1 GB |
|
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| EGAF00003446405 | bam | 4.7 GB |
|
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| EGAF00003446406 | bam | 4.0 GB |
|
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| EGAF00003446407 | bam | 4.3 GB |
|
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| EGAF00003446408 | bam | 4.1 GB |
|
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| EGAF00003446409 | bam | 3.8 GB |
|
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| EGAF00003446410 | bam | 4.6 GB |
|
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| EGAF00003446411 | bam | 4.4 GB |
|
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| EGAF00003446412 | bam | 4.2 GB |
|
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| EGAF00003446413 | bam | 1.7 GB |
|
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| EGAF00003446414 | bam | 1.7 GB |
|
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| EGAF00003446415 | bam | 4.5 GB |
|
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| EGAF00003446416 | bam | 4.5 GB |
|
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| EGAF00003446417 | bam | 2.2 GB |
|
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| EGAF00003446418 | bam | 1.9 GB |
|
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| EGAF00003446419 | bam | 4.6 GB |
|
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| EGAF00003446420 | bam | 1.7 GB |
|
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| EGAF00003446421 | bam | 4.2 GB |
|
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| EGAF00003446422 | bam | 4.2 GB |
|
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| EGAF00003446423 | bam | 1.6 GB |
|
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| EGAF00003446424 | bam | 4.1 GB |
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| EGAF00003446425 | bam | 4.2 GB |
|
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| EGAF00003446426 | bam | 4.3 GB |
|
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| EGAF00003446427 | bam | 4.5 GB |
|
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| EGAF00003446428 | bam | 3.9 GB |
|
|
| EGAF00003446429 | bam | 4.1 GB |
|
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| EGAF00003446430 | bam | 3.8 GB |
|
|
| EGAF00003446431 | bam | 3.8 GB |
|
|
| EGAF00003446432 | bam | 4.1 GB |
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| 297 Files (846.8 GB) | ||||