10X 3' V2 data of single immune cells in hepatocellular carcinoma
The immune microenvironment of hepatocellular carcinoma (HCC) is poorly characterized. Combining two single-cell RNA sequencing technologies, we produced transcriptomes of CD45+ immune cells for HCC patients from five immune-relevant sites: tumor, adjacent liver, hepatic lymph node (LN), blood, and ascites. This is the droplet data of this study
- 19 samples
- DAC: EGAC00001000551
- Technology: Illumina HiSeq 4000
Data access policy of sequencing data from BIOPIC, Peking University.The DATA ACCESS AGREEMENT is provided at https://github.com/zhangyybio/single-T-cell-data-access. To get the access to raw data, an agreement must be made first. Please fill in the form in https://github.com/zhangyybio/single-T-cell-data-access, and send me (cancerpku@pku.edu.cn) the document with signatures added. Particularly,in the page 4 of the agreement, table "Agreed for User Institution" should contain the signature of the person who can represent your institution, such as institution director
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| EGAS00001003449 | Other |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Located in | |
|---|---|---|---|---|
| EGAF00003205459 | bam | 19.2 GB | ||
| EGAF00003205460 | bam | 18.7 GB | ||
| EGAF00003205461 | bam | 17.8 GB | ||
| EGAF00003205462 | bam | 18.3 GB | ||
| EGAF00003205463 | bam | 13.5 GB | ||
| EGAF00003205464 | bam | 15.3 GB | ||
| EGAF00003205465 | bam | 12.1 GB | ||
| EGAF00003205467 | bam | 18.3 GB | ||
| EGAF00003205468 | bam | 20.5 GB | ||
| EGAF00003205469 | bam | 18.4 GB | ||
| EGAF00003205470 | bam | 20.7 GB | ||
| EGAF00003205471 | bam | 18.1 GB | ||
| EGAF00003205472 | bam | 21.0 GB | ||
| EGAF00003205473 | bam | 20.6 GB | ||
| EGAF00003205474 | bam | 18.3 GB | ||
| EGAF00003205475 | bam | 18.6 GB | ||
| EGAF00003205476 | bam | 18.8 GB | ||
| EGAF00003205580 | bam | 18.4 GB | ||
| EGAF00003205581 | bam | 20.0 GB | ||
| 19 Files (346.6 GB) | ||||