GATCI whole exome somatic variants (SomaticSniper)
Exome sequences were aligned to the GRCH38 reference genome. Aligned sequence was analyzed with GATK/SomaticSniper, to generate somatic variant calls. Somatic variant calls are in VCF format. Details for the mutect call can be found in the vcf header.
- DAC: EGAC00001002164
Data Access Agreement for the Nichols Group
Data will be available to qualified investigators upon request.
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| EGAS00001002234 | Other |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Located in | |
|---|---|---|---|---|
| EGAF00002012569 | vcf | 152.5 kB | ||
| EGAF00002012570 | vcf | 196.8 kB | ||
| EGAF00002012571 | vcf | 385.5 kB | ||
| EGAF00002012572 | vcf | 160.8 kB | ||
| EGAF00002012573 | vcf | 101.5 kB | ||
| EGAF00002012574 | vcf | 117.2 kB | ||
| EGAF00002012575 | vcf | 91.6 kB | ||
| EGAF00002012576 | vcf | 561.2 kB | ||
| EGAF00002012577 | vcf | 112.6 kB | ||
| EGAF00002012578 | vcf | 24.4 kB | ||
| EGAF00002012579 | vcf | 27.2 kB | ||
| EGAF00002012596 | vcf | 92.8 kB | ||
| EGAF00002012597 | vcf | 94.6 kB | ||
| EGAF00002012598 | vcf | 33.1 kB | ||
| EGAF00002012599 | vcf | 52.7 kB | ||
| EGAF00002012600 | vcf | 81.8 kB | ||
| EGAF00002012601 | vcf | 59.5 kB | ||
| EGAF00002012602 | vcf | 53.9 kB | ||
| EGAF00002012603 | vcf | 54.9 kB | ||
| EGAF00002012604 | vcf | 91.0 kB | ||
| EGAF00002012605 | vcf | 39.1 kB | ||
| EGAF00002012607 | vcf | 126.0 kB | ||
| EGAF00002012608 | vcf | 172.2 kB | ||
| EGAF00002012609 | vcf | 88.0 kB | ||
| EGAF00002012610 | vcf | 51.9 kB | ||
| EGAF00002012627 | vcf | 40.8 kB | ||
| EGAF00002012628 | vcf | 138.5 kB | ||
| EGAF00002012629 | vcf | 41.5 kB | ||
| EGAF00002012630 | vcf | 11.9 kB | ||
| EGAF00002012647 | vcf | 12.5 kB | ||
| EGAF00002012648 | vcf | 29.4 kB | ||
| EGAF00002012649 | vcf | 130.7 kB | ||
| EGAF00002012650 | vcf | 65.0 kB | ||
| EGAF00002012651 | vcf | 7.5 kB | ||
| EGAF00002012652 | vcf | 5.2 kB | ||
| EGAF00002012653 | vcf | 13.2 kB | ||
| EGAF00002012654 | vcf | 62.7 kB | ||
| EGAF00002012655 | vcf | 6.6 kB | ||
| EGAF00002012656 | vcf | 64.3 kB | ||
| EGAF00002012657 | vcf | 58.2 kB | ||
| EGAF00002012658 | vcf | 8.3 kB | ||
| EGAF00002012659 | vcf | 9.3 kB | ||
| EGAF00002012660 | vcf | 6.7 kB | ||
| EGAF00002012677 | vcf | 31.6 kB | ||
| EGAF00002012678 | vcf | 72.9 kB | ||
| EGAF00002012679 | vcf | 23.4 kB | ||
| EGAF00002012680 | vcf | 79.2 kB | ||
| EGAF00002012681 | vcf | 49.0 kB | ||
| EGAF00002012682 | vcf | 83.0 kB | ||
| EGAF00002012683 | vcf | 33.8 kB | ||
| EGAF00002012684 | vcf | 34.6 kB | ||
| EGAF00002012685 | vcf | 59.2 kB | ||
| EGAF00002012686 | vcf | 225.2 kB | ||
| EGAF00002012687 | vcf | 15.1 kB | ||
| EGAF00002012688 | vcf | 14.8 kB | ||
| EGAF00002012689 | vcf | 20.2 kB | ||
| EGAF00002012690 | vcf | 8.8 kB | ||
| EGAF00002012691 | vcf | 14.1 kB | ||
| EGAF00002012708 | vcf | 38.9 kB | ||
| EGAF00002012709 | vcf | 10.4 kB | ||
| EGAF00002012710 | vcf | 18.6 kB | ||
| EGAF00002012711 | vcf | 38.8 kB | ||
| EGAF00002012712 | vcf | 99.6 kB | ||
| EGAF00002012713 | vcf | 24.8 kB | ||
| EGAF00002012714 | vcf | 20.4 kB | ||
| EGAF00002012715 | vcf | 37.6 kB | ||
| EGAF00002012716 | vcf | 14.3 kB | ||
| EGAF00002012717 | vcf | 607.3 kB | ||
| EGAF00002012718 | vcf | 22.8 kB | ||
| EGAF00002012719 | vcf | 22.4 kB | ||
| EGAF00002012720 | vcf | 26.2 kB | ||
| EGAF00002012721 | vcf | 15.9 kB | ||
| EGAF00002012722 | vcf | 23.9 kB | ||
| EGAF00002012739 | vcf | 16.7 kB | ||
| EGAF00002012740 | vcf | 21.5 kB | ||
| EGAF00002012741 | vcf | 26.1 kB | ||
| EGAF00002012742 | vcf | 25.0 kB | ||
| EGAF00002012743 | vcf | 13.6 kB | ||
| EGAF00002012744 | vcf | 8.4 kB | ||
| EGAF00002012745 | vcf | 17.1 kB | ||
| EGAF00002012746 | vcf | 20.6 kB | ||
| EGAF00002012747 | vcf | 9.3 kB | ||
| EGAF00002012748 | vcf | 32.1 kB | ||
| EGAF00002012749 | vcf | 23.1 kB | ||
| EGAF00002012750 | vcf | 25.3 kB | ||
| EGAF00002012751 | vcf | 55.2 kB | ||
| EGAF00002012752 | vcf | 20.9 kB | ||
| EGAF00002012769 | vcf | 14.1 kB | ||
| EGAF00002012770 | vcf | 9.0 kB | ||
| EGAF00002012771 | vcf | 11.1 kB | ||
| EGAF00002012772 | vcf | 30.6 kB | ||
| EGAF00002012773 | vcf | 14.1 kB | ||
| EGAF00002012774 | vcf | 22.2 kB | ||
| EGAF00003290589 | vcf | 138.9 kB | ||
| 94 Files (6.1 MB) | ||||