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GATCI whole exome somatic variants (MuTect)

Exome sequences were aligned to the GRCH38 reference genome. Aligned sequence was analyzed with GATK/MuTect, to generate somatic variant calls. Somatic variant calls are in VCF format. Details for the mutect call can be found in the vcf header.

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Data Access Agreement for the Nichols Group

Data will be available to qualified investigators upon request.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00002012515 vcf 173.1 kB
EGAF00002012516 vcf 164.1 kB
EGAF00002012517 vcf 2.6 MB
EGAF00002012518 vcf 187.0 kB
EGAF00002012519 vcf 186.2 kB
EGAF00002012520 vcf 2.6 MB
EGAF00002012521 vcf 2.6 MB
EGAF00002012522 vcf 166.4 kB
EGAF00002012523 vcf 163.6 kB
EGAF00002012524 vcf 2.6 MB
EGAF00002012525 vcf 2.6 MB
EGAF00002012526 vcf 2.5 MB
EGAF00002012527 vcf 2.4 MB
EGAF00002012528 vcf 160.5 kB
EGAF00002012529 vcf 183.8 kB
EGAF00002012530 vcf 174.2 kB
EGAF00002012531 vcf 336.9 kB
EGAF00002012532 vcf 2.2 MB
EGAF00002012533 vcf 2.7 MB
EGAF00002012534 vcf 933.1 kB
EGAF00002012535 vcf 1.9 MB
EGAF00002012536 vcf 2.3 MB
EGAF00002012537 vcf 2.4 MB
EGAF00002012538 vcf 2.9 MB
EGAF00002012539 vcf 2.5 MB
EGAF00002012540 vcf 2.4 MB
EGAF00002012541 vcf 2.4 MB
EGAF00002012542 vcf 1.5 MB
EGAF00002012543 vcf 1.7 MB
EGAF00002012544 vcf 2.5 MB
EGAF00002012545 vcf 2.8 MB
EGAF00002012546 vcf 2.6 MB
EGAF00002012547 vcf 3.0 MB
EGAF00002012548 vcf 2.9 MB
EGAF00002012549 vcf 255.6 kB
EGAF00002012550 vcf 3.3 MB
EGAF00002012551 vcf 3.3 MB
EGAF00002012552 vcf 4.3 MB
EGAF00002012553 vcf 2.7 MB
EGAF00002012554 vcf 207.4 kB
EGAF00002012555 vcf 201.9 kB
EGAF00002012556 vcf 2.7 MB
EGAF00002012557 vcf 241.9 kB
EGAF00002012558 vcf 209.3 kB
EGAF00002012559 vcf 2.8 MB
EGAF00002012560 vcf 204.9 kB
EGAF00002012561 vcf 196.1 kB
EGAF00002012562 vcf 2.2 MB
EGAF00002012563 vcf 212.6 kB
EGAF00002012564 vcf 2.4 MB
EGAF00002012565 vcf 2.3 MB
EGAF00002012566 vcf 2.9 MB
EGAF00002012567 vcf 222.8 kB
EGAF00002012568 vcf 168.6 kB
EGAF00002012580 vcf 172.5 kB
EGAF00002012581 vcf 3.2 MB
EGAF00002012582 vcf 2.8 MB
EGAF00002012583 vcf 2.9 MB
EGAF00002012584 vcf 187.8 kB
EGAF00002012585 vcf 181.8 kB
EGAF00002012586 vcf 183.3 kB
EGAF00002012587 vcf 2.8 MB
EGAF00002012588 vcf 2.7 MB
EGAF00002012589 vcf 203.2 kB
EGAF00002012590 vcf 221.3 kB
EGAF00002012591 vcf 192.9 kB
EGAF00002012592 vcf 2.8 MB
EGAF00002012593 vcf 194.0 kB
EGAF00002012594 vcf 186.7 kB
EGAF00002012595 vcf 202.4 kB
EGAF00002012611 vcf 201.4 kB
EGAF00002012613 vcf 2.2 MB
EGAF00002012614 vcf 2.8 MB
EGAF00002012615 vcf 2.6 MB
EGAF00002012616 vcf 2.5 MB
EGAF00002012617 vcf 2.7 MB
EGAF00002012618 vcf 2.8 MB
EGAF00002012619 vcf 185.1 kB
EGAF00002012620 vcf 184.0 kB
EGAF00002012621 vcf 256.2 kB
EGAF00002012622 vcf 180.5 kB
EGAF00002012623 vcf 182.7 kB
EGAF00002012624 vcf 2.4 MB
EGAF00002012625 vcf 2.2 MB
EGAF00002012626 vcf 2.9 MB
EGAF00002012631 vcf 2.9 MB
EGAF00002012632 vcf 2.7 MB
EGAF00002012633 vcf 2.1 MB
EGAF00002012634 vcf 2.9 MB
EGAF00002012635 vcf 231.8 kB
EGAF00002012636 vcf 2.7 MB
EGAF00002012637 vcf 169.7 kB
EGAF00002012638 vcf 157.1 kB
EGAF00002012639 vcf 2.7 MB
EGAF00002012640 vcf 165.9 kB
EGAF00002012641 vcf 167.5 kB
EGAF00002012642 vcf 240.4 kB
EGAF00002012643 vcf 183.0 kB
EGAF00002012644 vcf 164.2 kB
EGAF00002012645 vcf 157.4 kB
EGAF00002012646 vcf 161.0 kB
EGAF00002012661 vcf 179.2 kB
EGAF00002012662 vcf 160.9 kB
EGAF00002012663 vcf 210.9 kB
EGAF00002012664 vcf 221.5 kB
EGAF00002012665 vcf 156.8 kB
EGAF00002012666 vcf 166.6 kB
EGAF00002012667 vcf 156.6 kB
EGAF00002012668 vcf 189.2 kB
EGAF00002012669 vcf 208.9 kB
EGAF00002012670 vcf 203.1 kB
EGAF00002012671 vcf 322.2 kB
EGAF00002012672 vcf 555.3 kB
EGAF00002012673 vcf 264.3 kB
EGAF00002012674 vcf 247.1 kB
EGAF00002012675 vcf 298.4 kB
EGAF00002012676 vcf 238.6 kB
EGAF00002012692 vcf 284.9 kB
EGAF00002012693 vcf 165.1 kB
EGAF00002012694 vcf 178.5 kB
EGAF00002012695 vcf 183.3 kB
EGAF00002012696 vcf 171.7 kB
EGAF00002012697 vcf 177.0 kB
EGAF00002012698 vcf 178.4 kB
EGAF00002012699 vcf 168.7 kB
EGAF00002012700 vcf 186.1 kB
EGAF00002012701 vcf 195.0 kB
EGAF00002012702 vcf 261.0 kB
EGAF00002012703 vcf 173.0 kB
EGAF00002012704 vcf 187.1 kB
EGAF00002012705 vcf 187.0 kB
EGAF00002012706 vcf 172.3 kB
EGAF00002012707 vcf 621.8 kB
EGAF00002012723 vcf 170.5 kB
EGAF00002012724 vcf 164.9 kB
EGAF00002012725 vcf 168.3 kB
EGAF00002012726 vcf 191.7 kB
EGAF00002012727 vcf 184.9 kB
EGAF00002012728 vcf 168.5 kB
EGAF00002012729 vcf 164.4 kB
EGAF00002012730 vcf 2.7 MB
EGAF00002012731 vcf 2.7 MB
EGAF00002012732 vcf 2.6 MB
EGAF00002012733 vcf 2.7 MB
EGAF00002012734 vcf 2.2 MB
EGAF00002012735 vcf 2.2 MB
EGAF00002012736 vcf 182.3 kB
EGAF00002012737 vcf 167.4 kB
EGAF00002012738 vcf 2.1 MB
EGAF00002012753 vcf 3.5 MB
EGAF00002012754 vcf 2.4 MB
EGAF00002012755 vcf 2.5 MB
EGAF00002012756 vcf 12.5 MB
EGAF00002012757 vcf 2.4 MB
EGAF00002012758 vcf 2.7 MB
EGAF00002012759 vcf 2.5 MB
EGAF00002012760 vcf 2.4 MB
EGAF00002012761 vcf 2.6 MB
EGAF00002012762 vcf 176.3 kB
EGAF00002012763 vcf 161.4 kB
EGAF00002012764 vcf 166.5 kB
EGAF00002012765 vcf 196.5 kB
EGAF00002012766 vcf 162.5 kB
EGAF00002012767 vcf 2.3 MB
EGAF00002012768 vcf 171.5 kB
165 Files (214.4 MB)