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GATCI whole exome germline variants

Exome sequences were aligned to the GRCH38 reference genome. Aligned sequence was analyzed with GATK Haplotype Caller to generate germline variant calls. Variant calls are in VCF format. Details for the call can be found in the VCF header

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Data Access Agreement for the Nichols Group

Data will be available to qualified investigators upon request.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001002234 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00002012223 vcf 10.8 MB
EGAF00002012224 vcf 10.6 MB
EGAF00002012225 vcf 4.1 MB
EGAF00002012226 vcf 9.3 MB
EGAF00002012227 vcf 10.5 MB
EGAF00002012228 vcf 9.2 MB
EGAF00002012229 vcf 10.7 MB
EGAF00002012230 vcf 10.5 MB
EGAF00002012231 vcf 3.1 MB
EGAF00002012232 vcf 3.3 MB
EGAF00002012233 vcf 4.8 MB
EGAF00002012234 vcf 3.5 MB
EGAF00002012235 vcf 4.2 MB
EGAF00002012236 vcf 11.3 MB
EGAF00002012237 vcf 4.1 MB
EGAF00002012238 vcf 3.8 MB
EGAF00002012239 vcf 4.7 MB
EGAF00002012240 vcf 3.0 MB
EGAF00002012241 vcf 10.0 MB
EGAF00002012242 vcf 11.7 MB
EGAF00002012243 vcf 5.0 MB
EGAF00002012244 vcf 5.2 MB
EGAF00002012245 vcf 5.3 MB
EGAF00002012246 vcf 6.0 MB
EGAF00002012247 vcf 6.1 MB
EGAF00002012248 vcf 6.4 MB
EGAF00002012249 vcf 13.7 MB
EGAF00002012250 vcf 11.8 MB
EGAF00002012251 vcf 11.5 MB
EGAF00002012252 vcf 14.8 MB
EGAF00002012253 vcf 9.1 MB
EGAF00002012254 vcf 10.8 MB
EGAF00002012255 vcf 8.9 MB
EGAF00002012256 vcf 9.4 MB
EGAF00002012257 vcf 8.1 MB
EGAF00002012258 vcf 11.1 MB
EGAF00002012259 vcf 10.2 MB
EGAF00002012260 vcf 11.9 MB
EGAF00002012261 vcf 10.3 MB
EGAF00002012262 vcf 9.3 MB
EGAF00002012263 vcf 10.8 MB
EGAF00002012264 vcf 10.2 MB
EGAF00002012265 vcf 13.5 MB
EGAF00002012266 vcf 12.0 MB
EGAF00002012267 vcf 13.1 MB
EGAF00002012268 vcf 12.5 MB
EGAF00002012269 vcf 13.8 MB
EGAF00002012270 vcf 13.4 MB
EGAF00002012271 vcf 11.6 MB
EGAF00002012272 vcf 5.1 MB
EGAF00002012273 vcf 13.0 MB
EGAF00002012274 vcf 12.9 MB
EGAF00002012275 vcf 9.7 MB
EGAF00002012276 vcf 16.7 MB
EGAF00002012277 vcf 15.9 MB
EGAF00002012278 vcf 14.2 MB
EGAF00002012279 vcf 11.2 MB
EGAF00002012280 vcf 9.4 MB
EGAF00002012281 vcf 13.3 MB
EGAF00002012282 vcf 12.7 MB
EGAF00002012283 vcf 13.0 MB
EGAF00002012284 vcf 13.0 MB
EGAF00002012285 vcf 13.6 MB
EGAF00002012286 vcf 13.3 MB
EGAF00002012287 vcf 12.9 MB
EGAF00002012288 vcf 13.7 MB
EGAF00002012289 vcf 13.0 MB
EGAF00002012290 vcf 13.1 MB
EGAF00002012291 vcf 13.2 MB
EGAF00002012292 vcf 13.8 MB
EGAF00002012293 vcf 13.1 MB
EGAF00002012294 vcf 11.7 MB
EGAF00002012295 vcf 11.2 MB
EGAF00002012296 vcf 10.9 MB
EGAF00002012297 vcf 13.6 MB
EGAF00002012298 vcf 6.2 MB
EGAF00002012299 vcf 12.9 MB
EGAF00002012300 vcf 12.9 MB
EGAF00002012302 vcf 5.8 MB
EGAF00002012303 vcf 8.8 MB
EGAF00002012304 vcf 5.8 MB
EGAF00002012305 vcf 3.8 MB
EGAF00002012306 vcf 6.2 MB
EGAF00002012307 vcf 6.5 MB
EGAF00002012308 vcf 7.2 MB
EGAF00002012309 vcf 3.5 MB
EGAF00002012310 vcf 4.1 MB
EGAF00002012311 vcf 13.0 MB
EGAF00002012312 vcf 13.6 MB
EGAF00002012313 vcf 10.3 MB
EGAF00002012314 vcf 7.4 MB
EGAF00002012315 vcf 9.0 MB
EGAF00002012316 vcf 6.5 MB
EGAF00002012317 vcf 5.3 MB
EGAF00002012318 vcf 3.4 MB
EGAF00002012319 vcf 4.9 MB
EGAF00002012320 vcf 5.2 MB
EGAF00002012321 vcf 2.7 MB
EGAF00002012323 vcf 12.6 MB
EGAF00002012324 vcf 11.7 MB
EGAF00002012325 vcf 10.8 MB
EGAF00002012326 vcf 10.0 MB
EGAF00002012327 vcf 6.4 MB
EGAF00002012328 vcf 5.1 MB
EGAF00002012329 vcf 11.0 MB
EGAF00002012330 vcf 11.4 MB
EGAF00002012331 vcf 11.9 MB
EGAF00002012332 vcf 6.3 MB
EGAF00002012333 vcf 7.1 MB
EGAF00002012334 vcf 12.8 MB
EGAF00002012335 vcf 10.2 MB
EGAF00002012336 vcf 10.1 MB
EGAF00002012337 vcf 5.7 MB
EGAF00002012338 vcf 7.0 MB
EGAF00002012339 vcf 5.6 MB
EGAF00002012340 vcf 13.8 MB
EGAF00002012341 vcf 15.3 MB
EGAF00002012342 vcf 14.6 MB
EGAF00002012343 vcf 12.6 MB
EGAF00002012344 vcf 7.4 MB
EGAF00002012345 vcf 3.2 MB
EGAF00002012346 vcf 3.7 MB
EGAF00002012347 vcf 8.6 MB
EGAF00002012348 vcf 2.4 MB
EGAF00002012349 vcf 8.4 MB
EGAF00002012350 vcf 10.6 MB
EGAF00002012351 vcf 9.0 MB
EGAF00002012352 vcf 5.3 MB
EGAF00002012353 vcf 8.6 MB
EGAF00002012354 vcf 7.9 MB
EGAF00002012355 vcf 4.9 MB
EGAF00002012356 vcf 6.7 MB
EGAF00002012357 vcf 7.9 MB
EGAF00002012358 vcf 5.4 MB
EGAF00002012359 vcf 5.0 MB
EGAF00002012360 vcf 7.6 MB
EGAF00002012361 vcf 7.7 MB
EGAF00002012362 vcf 13.3 MB
EGAF00002012363 vcf 8.1 MB
EGAF00002012364 vcf 8.1 MB
EGAF00002012365 vcf 5.7 MB
EGAF00002012366 vcf 5.7 MB
EGAF00002012367 vcf 3.3 MB
EGAF00002012368 vcf 357.1 kB
EGAF00002012369 vcf 310.3 kB
EGAF00002012370 vcf 3.2 MB
EGAF00002012371 vcf 2.3 MB
EGAF00002012372 vcf 3.6 MB
EGAF00002012373 vcf 6.8 MB
EGAF00002012374 vcf 4.0 MB
EGAF00002012375 vcf 2.9 MB
EGAF00002012376 vcf 731.9 kB
EGAF00002012377 vcf 195.3 kB
EGAF00002012378 vcf 5.7 MB
EGAF00002012379 vcf 2.7 MB
EGAF00002012380 vcf 11.6 MB
EGAF00002012381 vcf 9.4 MB
EGAF00002012382 vcf 9.2 MB
EGAF00002012383 vcf 10.1 MB
EGAF00002012384 vcf 4.9 MB
EGAF00002012385 vcf 5.5 MB
EGAF00002012386 vcf 6.3 MB
EGAF00002012387 vcf 6.5 MB
EGAF00002012388 vcf 9.5 MB
EGAF00002012389 vcf 10.2 MB
EGAF00002012390 vcf 6.2 MB
EGAF00002012391 vcf 7.1 MB
EGAF00002012392 vcf 9.8 MB
EGAF00002012393 vcf 7.8 MB
EGAF00002012394 vcf 6.2 MB
EGAF00002012395 vcf 8.3 MB
EGAF00003292674 vcf.gz 4.7 MB
EGAF00003292675 vcf.gz 6.1 MB
173 Files (1.5 GB)