GATCI whole genome sequence data
Sequence data in fastq format was aligned to the GRCh38 reference genome with BWA-MEM. Aligned sequence was preprocessed with GATK for Indel Realignment and Base Quality Score Recalibration. Duplicates were marked with Picard Mark Duplicates. Aligned sequence is in bam format. Details of the alignment can be found in the bam header
- DAC: EGAC00001002164
Data Access Agreement for the Nichols Group
Data will be available to qualified investigators upon request.
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| Other |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Located in | |
|---|---|---|---|---|
| EGAF00003091498 | bam | 174.9 GB | ||
| EGAF00003091499 | bam | 322.7 GB | ||
| EGAF00003091500 | bam | 163.8 GB | ||
| EGAF00003091501 | bam | 270.9 GB | ||
| EGAF00003091502 | bam | 186.9 GB | ||
| EGAF00003091505 | bam | 320.3 GB | ||
| EGAF00003091506 | bam | 176.9 GB | ||
| EGAF00003091533 | bam | 188.9 GB | ||
| EGAF00003091568 | bam | 350.8 GB | ||
| EGAF00003091569 | bam | 182.0 GB | ||
| EGAF00003091570 | bam | 282.2 GB | ||
| EGAF00003091574 | bam | 346.9 GB | ||
| EGAF00003091577 | bam | 289.4 GB | ||
| EGAF00003091578 | bam | 170.1 GB | ||
| EGAF00003091579 | bam | 299.9 GB | ||
| EGAF00003091580 | bam | 164.3 GB | ||
| EGAF00003091581 | bam | 289.5 GB | ||
| EGAF00003091582 | bam | 150.7 GB | ||
| EGAF00003091583 | bam | 322.5 GB | ||
| EGAF00003091584 | bam | 211.1 GB | ||
| EGAF00003127473 | bam | 177.9 GB | ||
| EGAF00003127474 | bam | 214.1 GB | ||
| EGAF00003127475 | bam | 181.1 GB | ||
| EGAF00003127476 | bam | 171.2 GB | ||
| EGAF00003127477 | bam | 195.2 GB | ||
| EGAF00003127478 | bam | 182.3 GB | ||
| EGAF00003127479 | bam | 161.8 GB | ||
| EGAF00003127480 | bam | 159.9 GB | ||
| EGAF00003127481 | bam | 314.3 GB | ||
| EGAF00003127482 | bam | 162.5 GB | ||
| EGAF00003127483 | bam | 308.6 GB | ||
| EGAF00003127484 | bam | 170.7 GB | ||
| EGAF00003127486 | bam | 300.5 GB | ||
| EGAF00003127487 | bam | 188.6 GB | ||
| EGAF00003127488 | bam | 162.2 GB | ||
| EGAF00003127489 | bam | 211.2 GB | ||
| EGAF00003127490 | bam | 216.4 GB | ||
| EGAF00003127491 | bam | 318.1 GB | ||
| EGAF00003127492 | bam | 160.2 GB | ||
| EGAF00003127493 | bam | 183.8 GB | ||
| EGAF00003127494 | bam | 176.1 GB | ||
| EGAF00003127495 | bam | 192.4 GB | ||
| EGAF00003127496 | bam | 206.8 GB | ||
| EGAF00003127497 | bam | 191.4 GB | ||
| EGAF00003127498 | bam | 184.7 GB | ||
| EGAF00003127499 | bam | 182.6 GB | ||
| EGAF00003127500 | bam | 184.9 GB | ||
| EGAF00003127501 | bam | 171.3 GB | ||
| EGAF00003127502 | bam | 158.7 GB | ||
| EGAF00003127503 | bam | 180.1 GB | ||
| EGAF00003127504 | bam | 142.8 GB | ||
| EGAF00003127505 | bam | 181.6 GB | ||
| EGAF00003127506 | bam | 307.9 GB | ||
| EGAF00003127507 | bam | 325.0 GB | ||
| EGAF00003127508 | bam | 158.2 GB | ||
| EGAF00003127509 | bam | 293.4 GB | ||
| EGAF00003127510 | bam | 175.9 GB | ||
| EGAF00003127511 | bam | 198.7 GB | ||
| EGAF00003127512 | bam | 211.1 GB | ||
| EGAF00003127514 | bam | 162.9 GB | ||
| EGAF00003127515 | bam | 310.3 GB | ||
| EGAF00003133509 | bam | 186.0 GB | ||
| EGAF00003133510 | bam | 168.2 GB | ||
| EGAF00003133511 | bam | 186.8 GB | ||
| EGAF00003133512 | bam | 162.7 GB | ||
| EGAF00003133513 | bam | 321.2 GB | ||
| EGAF00003133514 | bam | 174.9 GB | ||
| EGAF00003133515 | bam | 185.1 GB | ||
| EGAF00003133516 | bam | 324.0 GB | ||
| EGAF00003151250 | bam | 184.7 GB | ||
| EGAF00003151251 | bam | 188.6 GB | ||
| EGAF00003212017 | bam | 162.3 GB | ||
| EGAF00003250178 | bam | 297.0 GB | ||
| EGAF00003250179 | bam | 160.3 GB | ||
| EGAF00003253940 | bam | 418.3 GB | ||
| EGAF00003253941 | bam | 411.5 GB | ||
| EGAF00003258915 | bam | 433.9 GB | ||
| EGAF00003258916 | bam | 295.5 GB | ||
| EGAF00003263592 | bam | 419.4 GB | ||
| EGAF00003263593 | bam | 261.8 GB | ||
| EGAF00003263594 | bam | 171.5 GB | ||
| EGAF00003263595 | bam | 163.4 GB | ||
| EGAF00003287861 | bam | 152.7 GB | ||
| EGAF00003287862 | bam | 156.7 GB | ||
| EGAF00003287867 | bam | 172.3 GB | ||
| EGAF00003287868 | bam | 179.1 GB | ||
| EGAF00003287869 | bam | 280.1 GB | ||
| EGAF00003287870 | bam | 403.6 GB | ||
| EGAF00003287873 | bam | 175.5 GB | ||
| EGAF00003287874 | bam | 194.4 GB | ||
| EGAF00003287875 | bam | 438.3 GB | ||
| EGAF00003287876 | bam | 287.4 GB | ||
| EGAF00003287877 | bam | 410.4 GB | ||
| EGAF00003287878 | bam | 395.7 GB | ||
| EGAF00003287879 | bam | 306.3 GB | ||
| EGAF00003287880 | bam | 435.4 GB | ||
| EGAF00003287881 | bam | 419.9 GB | ||
| EGAF00003287882 | bam | 438.8 GB | ||
| 98 Files (23.4 TB) | ||||