Need Help?

Comparison of 133/144bp dominant phenotype vs 166bp dominant phenotype.

The sequencing results provided in this study is enriched through liquid phase hybridization capture. The data set shows 35 clinical cfDNA samples showing a dominant peak at 166bp and 35 clinical cfDNA samples showing a dominant peak at 134/144bp.

Request Access

Agreement for accessing data of NGS based ctDNA tests

Data Access Agreement I. DEFINITIONS AND INTERPRETATIONS 1) “Data producers” refer to “Geneseeq Technology Inc.” 2) “User Institution” refers to institution requesting data access. 3) “Authorized Personnel” refers to individuals in the User Institution that are granted data access, including principle investigators who submit the application and other registered users in Appendix I. II. TERMS AND CONDITIONS 1) The User Institution agrees to only use these Data for the purpose of the Project (described in Appendix I) and only for Research Purposes. Description of research projects (Appendix I) need to be submitted and reviewed by Data Access Committee (DCA) before data access. 2) Minimum protection measures are required for file access. Unencrypted data files can be held on a secured institutional compute system. It is suggested to set password logins and screenlocks for the data storage computers. For data transportation with USB or other portable hard drives, the data must be encrypted. 3) The User Institution agrees to preserve, at all times, the confidentiality of these Data. It is required to take all reasonable care to limit the possibility of identifying Research Participants in any research papers or publications. 4) The User Institution agrees only to transfer or disclose these Data, in whole or part, or any material derived from these Data, to the Authorized Personnel. Should the User Institution wish to share these Data with an External Collaborator, the External Collaborator must complete a separate application for access to these Data. 5) The User Institution agrees that the Data Producers, and all other parties involved in the creation, funding or protection of these Data: a) make no warranty or representation, express or implied as to the accuracy, quality or comprehensiveness of these Data; b) exclude to the fullest extent permitted by law all liability for actions, claims, proceedings, demands, losses (including but not limited to loss of profit), costs, awards damages and payments made by the Recipient that may arise (whether directly or indirectly) in any way whatsoever from the Recipient’s use of these Data or from the unavailability of, or break in access to, these Data for whatever reason and; c) bear no responsibility for the further analysis or interpretation of these Data. 6) The User Institution agrees to follow the Fort Lauderdale Guidelines (https://wellcome.ac.uk/sites/default/files/wtd003207_0.pdf) and the Toronto Statement (http://www.nature.com/nature/journal/v461/n7261/full/461168a.html). This includes but is not limited to recognizing the contribution of the Data Producers and including a proper acknowledgement in all reports or publications resulting from the use of these Data. 7) The User Institution agrees to follow the Publication Policy in Appendix II. This includes respecting the moratorium period for the Data Producers to publish the first peer-reviewed report describing and analyzing these Data. 8) The User Institution agrees not to make intellectual property claims on these Data and not to use intellectual property protection in ways that would prevent or block access to, or use of, any element of these Data, or conclusion drawn directly from these Data. 9) The User Institution agrees to destroy/discard the Data held, once it is no longer used for the Project, unless obliged to retain the data for archival purposes in conformity with audit or legal requirements. 10) The User Institution will notify Geneseeq Technology Inc. within 30 days of any changes or departures of Authorized Personnel. 11) The User Institution will notify Geneseeq Technology Inc. prior to any significant changes to the protocol for the Project. 12) The User Institution will notify Geneseeq Technology Inc. as soon as it becomes aware of a breach of the terms or conditions of this agreement. 13) Geneseeq Technology Inc. may terminate this agreement by written notice to the User Institution. If this agreement terminates for any reason, the User Institution will be required to destroy any Data held, including copies and backup copies. The User Institution accepts that it may be necessary for the Data Producers to alter the terms of this agreement from time to time. In the event that changes are required, the Data Producers will inform the User Institution of the changes and the User Institution may elect to accept the changes or terminate the agreement. 14) If requested, the User Institution will allow data security and management documentation to be inspected to verify that it is complying with the terms of this agreement. APPENDIX I – APPLICANT INFORMATION 1. Name of User Institute 2. Project name 3. Project description and research aims 4. Information of principle investigator* 1) Name: 2) Position: 3) Institutional email address: 4) Phone Number: 5) Full postal address: 6) Registered users in this project (Include the information of all students and research staff who will have access to the data for the project): a. Name of Registered User b. Institutional Email c. Job Title *Co-investigators or collaborators in other Institutions must submit a separate data access application. APPENDIX II – PUBLICATION POLICY Data producers intend to publish the results of their analysis of this dataset and do not consider its deposition into public databases to be the equivalent of such publications. Data producers anticipate that the dataset could be useful to other qualified researchers for a variety of purposes. However, some areas of work are subject to a publication moratorium. The publication moratorium covers any publications (including oral communications) that describe the use of the dataset. For research papers, submission for publication should not occur until 24 months after these data were first made available on the relevant hosting database, unless Data producers has provided written consent to earlier submission. In any publications based on these data, please describe how the data can be accessed, including the name of the hosting database (e.g., The European Genome-phenome Archive at the European Bioinformatics Institute) and its accession numbers (e.g., EGAS00000000029), and acknowledge its use in a form agreed by the User Institution with Data producers.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00003249410 fastq.gz 1.9 GB
EGAF00003249411 fastq.gz 2.1 GB
EGAF00003249412 fastq.gz 553.6 MB
EGAF00003249413 fastq.gz 634.6 MB
EGAF00003249414 fastq.gz 744.0 MB
EGAF00003249415 fastq.gz 836.4 MB
EGAF00003249416 fastq.gz 828.5 MB
EGAF00003249417 fastq.gz 971.4 MB
EGAF00003249418 fastq.gz 1.1 GB
EGAF00003249419 fastq.gz 1.2 GB
EGAF00003249420 fastq.gz 872.7 MB
EGAF00003249421 fastq.gz 961.2 MB
EGAF00003249422 fastq.gz 815.0 MB
EGAF00003249423 fastq.gz 923.5 MB
EGAF00003249424 fastq.gz 332.9 MB
EGAF00003249425 fastq.gz 388.8 MB
EGAF00003249426 fastq.gz 3.7 GB
EGAF00003249427 fastq.gz 4.3 GB
EGAF00003249428 fastq.gz 141.6 MB
EGAF00003249429 fastq.gz 166.8 MB
EGAF00003249430 fastq.gz 3.3 GB
EGAF00003249431 fastq.gz 4.2 GB
EGAF00003249432 fastq.gz 2.4 GB
EGAF00003249433 fastq.gz 2.7 GB
EGAF00003249434 fastq.gz 2.4 GB
EGAF00003249435 fastq.gz 3.0 GB
EGAF00003249436 fastq.gz 2.2 GB
EGAF00003249437 fastq.gz 2.6 GB
EGAF00003249438 fastq.gz 1.5 GB
EGAF00003249439 fastq.gz 1.7 GB
EGAF00003249440 fastq.gz 2.8 GB
EGAF00003249441 fastq.gz 3.2 GB
EGAF00003249442 fastq.gz 306.4 MB
EGAF00003249443 fastq.gz 368.5 MB
EGAF00003249444 fastq.gz 1.9 GB
EGAF00003249445 fastq.gz 2.1 GB
EGAF00003249446 fastq.gz 2.7 GB
EGAF00003249447 fastq.gz 3.0 GB
EGAF00003249448 fastq.gz 1.8 GB
EGAF00003249449 fastq.gz 2.0 GB
EGAF00003249450 fastq.gz 304.9 MB
EGAF00003249451 fastq.gz 349.8 MB
EGAF00003249452 fastq.gz 2.4 GB
EGAF00003249453 fastq.gz 2.9 GB
EGAF00003249454 fastq.gz 2.7 GB
EGAF00003249455 fastq.gz 3.1 GB
EGAF00003249456 fastq.gz 2.9 GB
EGAF00003249457 fastq.gz 3.3 GB
EGAF00003249458 fastq.gz 2.4 GB
EGAF00003249459 fastq.gz 2.7 GB
EGAF00003249460 fastq.gz 2.2 GB
EGAF00003249461 fastq.gz 2.5 GB
EGAF00003249462 fastq.gz 359.1 MB
EGAF00003249463 fastq.gz 397.5 MB
EGAF00003249464 fastq.gz 1.9 GB
EGAF00003249465 fastq.gz 2.1 GB
EGAF00003249466 fastq.gz 300.3 MB
EGAF00003249467 fastq.gz 313.2 MB
EGAF00003249468 fastq.gz 2.8 GB
EGAF00003249469 fastq.gz 3.0 GB
EGAF00003249470 fastq.gz 1.9 GB
EGAF00003249471 fastq.gz 2.1 GB
EGAF00003249472 fastq.gz 298.8 MB
EGAF00003249473 fastq.gz 341.8 MB
EGAF00003249474 fastq.gz 1.9 GB
EGAF00003249475 fastq.gz 2.1 GB
EGAF00003249476 fastq.gz 1.8 GB
EGAF00003249477 fastq.gz 2.0 GB
EGAF00003249478 fastq.gz 400.8 MB
EGAF00003249479 fastq.gz 445.2 MB
EGAF00003249480 fastq.gz 1.2 GB
EGAF00003249481 fastq.gz 1.5 GB
EGAF00003249482 fastq.gz 837.5 MB
EGAF00003249483 fastq.gz 912.7 MB
EGAF00003249484 fastq.gz 1.0 GB
EGAF00003249485 fastq.gz 1.2 GB
EGAF00003249486 fastq.gz 2.0 GB
EGAF00003249487 fastq.gz 2.3 GB
EGAF00003249488 fastq.gz 3.5 GB
EGAF00003249489 fastq.gz 4.3 GB
EGAF00003249490 fastq.gz 370.5 MB
EGAF00003249491 fastq.gz 397.2 MB
EGAF00003249492 fastq.gz 1.8 GB
EGAF00003249493 fastq.gz 2.1 GB
EGAF00003249494 fastq.gz 3.0 GB
EGAF00003249495 fastq.gz 3.4 GB
EGAF00003249496 fastq.gz 2.4 GB
EGAF00003249497 fastq.gz 2.7 GB
EGAF00003249498 fastq.gz 418.3 MB
EGAF00003249499 fastq.gz 488.7 MB
EGAF00003249500 fastq.gz 2.9 GB
EGAF00003249501 fastq.gz 3.3 GB
EGAF00003249502 fastq.gz 445.7 MB
EGAF00003249503 fastq.gz 562.1 MB
EGAF00003249504 fastq.gz 3.3 GB
EGAF00003249505 fastq.gz 3.9 GB
EGAF00003249506 fastq.gz 2.3 GB
EGAF00003249507 fastq.gz 2.4 GB
EGAF00003249508 fastq.gz 2.6 GB
EGAF00003249509 fastq.gz 3.1 GB
EGAF00003249510 fastq.gz 2.7 GB
EGAF00003249511 fastq.gz 3.1 GB
EGAF00003249512 fastq.gz 2.4 GB
EGAF00003249513 fastq.gz 2.7 GB
EGAF00003249514 fastq.gz 1.8 GB
EGAF00003249515 fastq.gz 2.0 GB
EGAF00003249516 fastq.gz 438.4 MB
EGAF00003249517 fastq.gz 542.6 MB
EGAF00003249518 fastq.gz 2.6 GB
EGAF00003249519 fastq.gz 3.2 GB
EGAF00003249520 fastq.gz 836.6 MB
EGAF00003249521 fastq.gz 974.1 MB
EGAF00003249522 fastq.gz 954.3 MB
EGAF00003249523 fastq.gz 1.0 GB
EGAF00003249524 fastq.gz 334.5 MB
EGAF00003249525 fastq.gz 392.7 MB
EGAF00003249526 fastq.gz 2.8 GB
EGAF00003249527 fastq.gz 3.3 GB
EGAF00003249528 fastq.gz 834.6 MB
EGAF00003249529 fastq.gz 968.3 MB
EGAF00003249530 fastq.gz 867.0 MB
EGAF00003249531 fastq.gz 1000.0 MB
EGAF00003249532 fastq.gz 3.2 GB
EGAF00003249533 fastq.gz 3.7 GB
EGAF00003249534 fastq.gz 979.2 MB
EGAF00003249535 fastq.gz 1.2 GB
EGAF00003249536 fastq.gz 2.7 GB
EGAF00003249537 fastq.gz 3.1 GB
EGAF00003249538 fastq.gz 3.1 GB
EGAF00003249539 fastq.gz 3.7 GB
EGAF00003249540 fastq.gz 888.6 MB
EGAF00003249541 fastq.gz 1.1 GB
EGAF00003249542 fastq.gz 859.7 MB
EGAF00003249543 fastq.gz 1.0 GB
EGAF00003249544 fastq.gz 368.1 MB
EGAF00003249545 fastq.gz 436.5 MB
EGAF00003249546 fastq.gz 2.2 GB
EGAF00003249547 fastq.gz 2.5 GB
EGAF00003249548 fastq.gz 774.2 MB
EGAF00003249549 fastq.gz 874.8 MB
140 Files (250.7 GB)