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Colon Cancer Organoid Cultures and Tumors Whole Genome Sequencing Data

Five hundred nanograms of genomic DNA was fragmented by Covaris S2, the fragmented DNAs were performed end-repair, A-tailing at the 3 prime end, adaptors ligation with an IDT dual-indexed UMI adaptor system at the terminal ends. The adapter ligated library with size range 300-750bp were selected by dual-SPRI method. Twenty percent of the size selected PCR-free libraries were enriched by 5 PCR cycles prior to library size assessment by Bioanalyzer Fragment Analyzer. The PCR-free libraries were quantified by qPCR.The PCR-free libraries were denatured and diluted to optimal concentration. Illumina NovaSeq 6000 was used for Pair-End 151bp sequencing.

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HKU Colon Cancer Organoids Genomics Study - PI Prof. Suet Yi Leung

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Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00003091230 bam 134.8 GB
EGAF00003091231 bam 111.6 GB
EGAF00003091232 bam 107.7 GB
EGAF00003091233 bam 120.4 GB
EGAF00003091234 bam 115.4 GB
EGAF00003091235 bam 105.0 GB
EGAF00003091236 bam 119.4 GB
EGAF00003091237 bam 129.3 GB
EGAF00003091238 bam 133.0 GB
9 Files (1.1 TB)