Colon Cancer Organoid Cultures and Tumors Whole Genome Sequencing Data
Five hundred nanograms of genomic DNA was fragmented by Covaris S2, the fragmented DNAs were performed end-repair, A-tailing at the 3 prime end, adaptors ligation with an IDT dual-indexed UMI adaptor system at the terminal ends. The adapter ligated library with size range 300-750bp were selected by dual-SPRI method. Twenty percent of the size selected PCR-free libraries were enriched by 5 PCR cycles prior to library size assessment by Bioanalyzer Fragment Analyzer. The PCR-free libraries were quantified by qPCR.The PCR-free libraries were denatured and diluted to optimal concentration. Illumina NovaSeq 6000 was used for Pair-End 151bp sequencing.
- 9 samples
- DAC: EGAC00001001405
- Technology: Illumina NovaSeq 6000
HKU Colon Cancer Organoids Genomics Study - PI Prof. Suet Yi Leung
Policy.doc
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
Study ID | Study Title | Study Type |
---|---|---|
EGAS00001004063 | Other |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
ID | File Type | Size | Located in | |
---|---|---|---|---|
EGAF00003091230 | bam | 134.8 GB | ||
EGAF00003091231 | bam | 111.6 GB | ||
EGAF00003091232 | bam | 107.7 GB | ||
EGAF00003091233 | bam | 120.4 GB | ||
EGAF00003091234 | bam | 115.4 GB | ||
EGAF00003091235 | bam | 105.0 GB | ||
EGAF00003091236 | bam | 119.4 GB | ||
EGAF00003091237 | bam | 129.3 GB | ||
EGAF00003091238 | bam | 133.0 GB | ||
9 Files (1.1 TB) |