Single-cell expression of Hodgkin lymphoma
Single-cell gene expression was profiled for 22 Hodgkin lymphoma tumors and 5 reactive lymph nodes (2 replicates were performed for RLN-1). Library preparation was performed with the 10x Chromium platform (3' version 2 assay). Sequencing was performed on an Illumina NextSeq. The BAM files were generated from the raw sequencing data using Cell Ranger (v2.1.0) mkfastq and count commands.
- 28 samples
- DAC: EGAC00000000011
- Technology: Illumina HiSeq 2500
DUO:0000007 version: 2019-01-07
disease specific research
This data use permission indicates that use is allowed provided it is related to the specified disease.
ModifiersMONDO:0005157
DUO:0000012 version: 2021-02-23
research specific restrictions
This data use modifier indicates that use is limited to studies of a certain research type.
DUO:0000021 version: 2019-01-07
ethics approval required
This data use modifier indicates that the requestor must provide documentation of local IRB/ERB approval.
DUO:0000025 version: 2021-02-23
time limit on use
This data use modifier indicates that use is approved for a specific number of months.
DUO:0000026 version: 2019-01-07
user specific restriction
This data use modifier indicates that use is limited to use by approved users.
BC Cancer, part of the Provincial Health Services Authority - Data Access Policy
Access to this data is controlled. There are a number of steps that a researcher must take to obtain access to this data, including execution of a Data Access Agreement between the institutions. The process is overseen by the Technology Development Office; please contact our general email address TDOadmin@phsa.ca. Please only click the "request data" button on the EGA website after a Data Access Agreement is fully executed.
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| EGAS00001004085 | Other |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Quality Report |
Located in
i
|
|---|---|---|---|---|
| EGAF00003058056 | bam | 15.3 GB |
|
|
| EGAF00003058057 | bam | 10.3 GB |
|
|
| EGAF00003058058 | bam | 19.1 GB |
|
|
| EGAF00003058059 | bam | 16.3 GB |
|
|
| EGAF00003058060 | bam | 18.8 GB |
|
|
| EGAF00003058061 | bam | 17.0 GB |
|
|
| EGAF00003058062 | bam | 14.2 GB |
|
|
| EGAF00003058063 | bam | 17.5 GB |
|
|
| EGAF00003058064 | bam | 19.5 GB |
|
|
| EGAF00003058065 | bam | 18.2 GB |
|
|
| EGAF00003058066 | bam | 14.1 GB |
|
|
| EGAF00003058067 | bam | 13.5 GB |
|
|
| EGAF00003058068 | bam | 14.6 GB |
|
|
| EGAF00003058069 | bam | 17.1 GB |
|
|
| EGAF00003058070 | bam | 16.3 GB |
|
|
| EGAF00003058071 | bam | 19.8 GB |
|
|
| EGAF00003058072 | bam | 20.3 GB |
|
|
| EGAF00003058073 | bam | 19.5 GB |
|
|
| EGAF00003058074 | bam | 20.2 GB |
|
|
| EGAF00003058075 | bam | 18.3 GB |
|
|
| EGAF00003058076 | bam | 17.5 GB |
|
|
| EGAF00003058077 | bam | 21.6 GB |
|
|
| EGAF00003058078 | bam | 19.8 GB |
|
|
| EGAF00003058079 | bam | 21.6 GB |
|
|
| EGAF00003058080 | bam | 18.7 GB |
|
|
| EGAF00003058081 | bam | 17.0 GB |
|
|
| EGAF00003058082 | bam | 16.0 GB |
|
|
| EGAF00003058083 | bam | 16.3 GB |
|
|
| 28 Files (488.6 GB) | ||||