DESIGN-VUMC low coverage WGS
Low-coverage whole genome sequencing data of 37 HPV-negative HNSCC specimens from patients treated at the VU Medical Centre, Amsterdam. HNSCC biopsy samples obtained prior to treatment (chemo-radiotherapy) were used for WGS to a depth of approx. 0.5X.
- 37 samples
- DAC: EGAC00001001422
- Technology: Illumina HiSeq 2000
DESIGN-VUMC Policy
To request access to this dataset, please contact the Data Access Committee HNSCC_DAC_DESIGN. Data Access Requests for this dataset should include the following information: - Recipient and Recipient Institution - Details of dataset requested, i.e. EGA Study and EGA Dataset Accession Number(s) - Study objective and brief abstract of the project in which the data will be used (500 words) - List of individuals who will be allowed access to the requested datasets by the Recipient and/or Recipient Institution - Policy name (DESIGN-VUMC) assigned to this dataset Data Access Request for this dataset will be reviewed by the Data Access Committee HNSCC_DAC_DESIGN. After receipt and review by the Data Access Committee, a Data Transfer Agreement will have to be completed, signed and returned to the HNSCC_DAC_DESIGN Data Access Committee, prior to being granted access to the requested dataset(s). For the avoidance of doubt, the HNSCC_DAC_DESIGN Data Access Committee reserves the right to withhold granting access.
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
Study ID | Study Title | Study Type |
---|---|---|
EGAS00001004091 | Whole Genome Sequencing |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
ID | File Type | Size | Located in | |
---|---|---|---|---|
EGAF00003029945 | bam | 1.1 GB | ||
EGAF00003029946 | bam | 1.2 GB | ||
EGAF00003029947 | bam | 1.2 GB | ||
EGAF00003029948 | bam | 1.2 GB | ||
EGAF00003029949 | bam | 1.2 GB | ||
EGAF00003029950 | bam | 1.1 GB | ||
EGAF00003029951 | bam | 1.3 GB | ||
EGAF00003029952 | bam | 1.3 GB | ||
EGAF00003029953 | bam | 1.3 GB | ||
EGAF00003029954 | bam | 1.4 GB | ||
EGAF00003029956 | bam | 1.2 GB | ||
EGAF00003029957 | bam | 1.3 GB | ||
EGAF00003029958 | bam | 1.4 GB | ||
EGAF00003029959 | bam | 1.3 GB | ||
EGAF00003029960 | bam | 1.2 GB | ||
EGAF00003029961 | bam | 1.1 GB | ||
EGAF00003029962 | bam | 1.4 GB | ||
EGAF00003029997 | bam | 1.3 GB | ||
EGAF00003029998 | bam | 1.3 GB | ||
EGAF00003029999 | bam | 1.0 GB | ||
EGAF00003030000 | bam | 1.2 GB | ||
EGAF00003030001 | bam | 1.2 GB | ||
EGAF00003030002 | bam | 985.7 MB | ||
EGAF00003030003 | bam | 1.1 GB | ||
EGAF00003030004 | bam | 753.1 MB | ||
EGAF00003030005 | bam | 1.2 GB | ||
EGAF00003030006 | bam | 1.4 GB | ||
EGAF00003030008 | bam | 1.1 GB | ||
EGAF00003030009 | bam | 1.6 GB | ||
EGAF00003030010 | bam | 1.2 GB | ||
EGAF00003030011 | bam | 1.3 GB | ||
EGAF00003030012 | bam | 1.1 GB | ||
EGAF00003030013 | bam | 1.2 GB | ||
EGAF00003030014 | bam | 1.1 GB | ||
EGAF00003030015 | bam | 1.1 GB | ||
EGAF00003030016 | bam | 1.1 GB | ||
EGAF00003030017 | bam | 1.0 GB | ||
37 Files (44.3 GB) |