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DESIGN-NKI low coverage WGS

Low-coverage whole genome sequencing data of 37 HPV-negative HNSCC specimens from patients treated at The Netherlands Cancer Institute. HNSCC biopsy samples obtained prior to treatment (chemo-radiotherapy) were used for WGS to a depth of approx. 0.5X.

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DESIGN-NKI Policy

To request access to this dataset, please contact the Data Access Committee HNSCC_DAC_DESIGN. Data Access Requests for this dataset should include the following information: - Recipient and Recipient Institution - Details of dataset requested, i.e. EGA Study and EGA Dataset Accession Number(s) - Study objective and brief abstract of the project in which the data will be used (500 words) - List of individuals who will be allowed access to the requested datasets by the Recipient and/or Recipient Institution - Policy name (DESIGN-NKI) assigned to this dataset Data Access Request for this dataset will be reviewed by the Data Access Committee HNSCC_DAC_DESIGN. After receipt and review by the Data Access Committee, a Data Transfer Agreement will have to be completed, signed and returned to the HNSCC_DAC_DESIGN Data Access Committee, prior to being granted access to the requested dataset(s). For the avoidance of doubt, the HNSCC_DAC_DESIGN Data Access Committee reserves the right to withhold granting access.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001004091 Whole Genome Sequencing

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00003029944 bam 1.1 GB
EGAF00003029955 bam 1.1 GB
EGAF00003029963 bam 1.1 GB
EGAF00003029964 bam 1.1 GB
EGAF00003029965 bam 1.1 GB
EGAF00003029966 bam 1.1 GB
EGAF00003029967 bam 1.1 GB
EGAF00003029968 bam 1.2 GB
EGAF00003029969 bam 1.2 GB
EGAF00003029970 bam 1.3 GB
EGAF00003029971 bam 1.3 GB
EGAF00003029972 bam 1.2 GB
EGAF00003029973 bam 1.4 GB
EGAF00003029974 bam 1.5 GB
EGAF00003029975 bam 1.1 GB
EGAF00003029976 bam 1.0 GB
EGAF00003029977 bam 826.7 MB
EGAF00003029978 bam 1.2 GB
EGAF00003029979 bam 993.7 MB
EGAF00003029980 bam 1.2 GB
EGAF00003029981 bam 1.4 GB
EGAF00003029982 bam 1.3 GB
EGAF00003029983 bam 1.4 GB
EGAF00003029984 bam 1.3 GB
EGAF00003029985 bam 1.2 GB
EGAF00003029986 bam 1.4 GB
EGAF00003029987 bam 1.1 GB
EGAF00003029988 bam 1.2 GB
EGAF00003029989 bam 1.3 GB
EGAF00003029990 bam 1.2 GB
EGAF00003029991 bam 967.4 MB
EGAF00003029992 bam 1.2 GB
EGAF00003029993 bam 1.2 GB
EGAF00003029994 bam 1.2 GB
EGAF00003029995 bam 1.2 GB
EGAF00003029996 bam 1.2 GB
EGAF00003030007 bam 1.2 GB
37 Files (43.8 GB)