DESIGN-NKI low coverage WGS
Low-coverage whole genome sequencing data of 37 HPV-negative HNSCC specimens from patients treated at The Netherlands Cancer Institute. HNSCC biopsy samples obtained prior to treatment (chemo-radiotherapy) were used for WGS to a depth of approx. 0.5X.
- 37 samples
- DAC: EGAC00001001422
- Technology: Illumina HiSeq 2000
DESIGN-NKI Policy
To request access to this dataset, please contact the Data Access Committee HNSCC_DAC_DESIGN. Data Access Requests for this dataset should include the following information: - Recipient and Recipient Institution - Details of dataset requested, i.e. EGA Study and EGA Dataset Accession Number(s) - Study objective and brief abstract of the project in which the data will be used (500 words) - List of individuals who will be allowed access to the requested datasets by the Recipient and/or Recipient Institution - Policy name (DESIGN-NKI) assigned to this dataset Data Access Request for this dataset will be reviewed by the Data Access Committee HNSCC_DAC_DESIGN. After receipt and review by the Data Access Committee, a Data Transfer Agreement will have to be completed, signed and returned to the HNSCC_DAC_DESIGN Data Access Committee, prior to being granted access to the requested dataset(s). For the avoidance of doubt, the HNSCC_DAC_DESIGN Data Access Committee reserves the right to withhold granting access.
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
Study ID | Study Title | Study Type |
---|---|---|
EGAS00001004091 | Whole Genome Sequencing |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
ID | File Type | Size | Located in | |
---|---|---|---|---|
EGAF00003029944 | bam | 1.1 GB | ||
EGAF00003029955 | bam | 1.1 GB | ||
EGAF00003029963 | bam | 1.1 GB | ||
EGAF00003029964 | bam | 1.1 GB | ||
EGAF00003029965 | bam | 1.1 GB | ||
EGAF00003029966 | bam | 1.1 GB | ||
EGAF00003029967 | bam | 1.1 GB | ||
EGAF00003029968 | bam | 1.2 GB | ||
EGAF00003029969 | bam | 1.2 GB | ||
EGAF00003029970 | bam | 1.3 GB | ||
EGAF00003029971 | bam | 1.3 GB | ||
EGAF00003029972 | bam | 1.2 GB | ||
EGAF00003029973 | bam | 1.4 GB | ||
EGAF00003029974 | bam | 1.5 GB | ||
EGAF00003029975 | bam | 1.1 GB | ||
EGAF00003029976 | bam | 1.0 GB | ||
EGAF00003029977 | bam | 826.7 MB | ||
EGAF00003029978 | bam | 1.2 GB | ||
EGAF00003029979 | bam | 993.7 MB | ||
EGAF00003029980 | bam | 1.2 GB | ||
EGAF00003029981 | bam | 1.4 GB | ||
EGAF00003029982 | bam | 1.3 GB | ||
EGAF00003029983 | bam | 1.4 GB | ||
EGAF00003029984 | bam | 1.3 GB | ||
EGAF00003029985 | bam | 1.2 GB | ||
EGAF00003029986 | bam | 1.4 GB | ||
EGAF00003029987 | bam | 1.1 GB | ||
EGAF00003029988 | bam | 1.2 GB | ||
EGAF00003029989 | bam | 1.3 GB | ||
EGAF00003029990 | bam | 1.2 GB | ||
EGAF00003029991 | bam | 967.4 MB | ||
EGAF00003029992 | bam | 1.2 GB | ||
EGAF00003029993 | bam | 1.2 GB | ||
EGAF00003029994 | bam | 1.2 GB | ||
EGAF00003029995 | bam | 1.2 GB | ||
EGAF00003029996 | bam | 1.2 GB | ||
EGAF00003030007 | bam | 1.2 GB | ||
37 Files (43.8 GB) |