DESIGN-VUMC RNA-seq
RNA-Seq data of 55 HPV-negative HNSCC specimens from patients treated at the VU medical Centre, Amsterdam, The Netherlands. HNSCC biopsy samples obtained prior to treatment (chemo-radiotherapy) were used for polyA mRNA sequencing.
- 46 samples
- DAC: EGAC00001001422
- Technology: Illumina HiSeq 2000
DESIGN-VUMC Policy
To request access to this dataset, please contact the Data Access Committee HNSCC_DAC_DESIGN. Data Access Requests for this dataset should include the following information: - Recipient and Recipient Institution - Details of dataset requested, i.e. EGA Study and EGA Dataset Accession Number(s) - Study objective and brief abstract of the project in which the data will be used (500 words) - List of individuals who will be allowed access to the requested datasets by the Recipient and/or Recipient Institution - Policy name (DESIGN-VUMC) assigned to this dataset Data Access Request for this dataset will be reviewed by the Data Access Committee HNSCC_DAC_DESIGN. After receipt and review by the Data Access Committee, a Data Transfer Agreement will have to be completed, signed and returned to the HNSCC_DAC_DESIGN Data Access Committee, prior to being granted access to the requested dataset(s). For the avoidance of doubt, the HNSCC_DAC_DESIGN Data Access Committee reserves the right to withhold granting access.
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
Study ID | Study Title | Study Type |
---|---|---|
RNASeq |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
ID | File Type | Size | Located in | |
---|---|---|---|---|
EGAF00003029818 | bam | 836.7 MB | ||
EGAF00003029819 | bam | 784.9 MB | ||
EGAF00003029820 | bam | 857.8 MB | ||
EGAF00003029821 | bam | 1.1 GB | ||
EGAF00003029822 | bam | 743.5 MB | ||
EGAF00003029823 | bam | 889.9 MB | ||
EGAF00003029824 | bam | 733.5 MB | ||
EGAF00003029825 | bam | 907.3 MB | ||
EGAF00003029826 | bam | 687.1 MB | ||
EGAF00003029827 | bam | 700.6 MB | ||
EGAF00003029828 | bam | 869.4 MB | ||
EGAF00003029829 | bam | 877.9 MB | ||
EGAF00003029830 | bam | 760.7 MB | ||
EGAF00003029831 | bam | 816.5 MB | ||
EGAF00003029832 | bam | 717.7 MB | ||
EGAF00003029833 | bam | 860.6 MB | ||
EGAF00003029834 | bam | 884.5 MB | ||
EGAF00003029835 | bam | 845.2 MB | ||
EGAF00003029836 | bam | 906.9 MB | ||
EGAF00003029837 | bam | 798.3 MB | ||
EGAF00003029838 | bam | 351.0 MB | ||
EGAF00003029839 | bam | 900.3 MB | ||
EGAF00003029840 | bam | 950.0 MB | ||
EGAF00003029841 | bam | 900.9 MB | ||
EGAF00003029842 | bam | 916.3 MB | ||
EGAF00003029843 | bam | 601.3 MB | ||
EGAF00003029845 | bam | 175.8 MB | ||
EGAF00003029847 | bam | 248.9 MB | ||
EGAF00003029848 | bam | 757.5 MB | ||
EGAF00003029851 | bam | 617.8 MB | ||
EGAF00003029852 | bam | 658.8 MB | ||
EGAF00003029854 | bam | 743.5 MB | ||
EGAF00003029856 | bam | 788.4 MB | ||
EGAF00003029859 | bam | 761.5 MB | ||
EGAF00003029860 | bam | 921.5 MB | ||
EGAF00003029863 | bam | 646.7 MB | ||
EGAF00003029864 | bam | 806.6 MB | ||
EGAF00003029867 | bam | 730.3 MB | ||
EGAF00003029868 | bam | 791.2 MB | ||
EGAF00003029870 | bam | 663.2 MB | ||
EGAF00003029872 | bam | 806.3 MB | ||
EGAF00003029874 | bam | 903.7 MB | ||
EGAF00003029876 | bam | 874.9 MB | ||
EGAF00003029878 | bam | 955.5 MB | ||
EGAF00003029880 | bam | 525.7 MB | ||
EGAF00003029882 | bam | 880.5 MB | ||
46 Files (35.4 GB) |