Cell line data (RNAseq, ATACseq, ChIPseq)
Content: 2 GB RTK I cell lines (LN229, ZH487) in two conditions (NT control and shSOX10). RNAseq: single replicates per condition, polyA+ RNA sequencing, SE. ATACseq: biological replicates per condition, SE. ChIPseq (histone H3 modifications, LN229 only): all marks for each condition were pooled and sequenced on two lanes for each pool. ChIPseq (BRD4 and SOX10): SOX10 libraries were sequenced on single lanes. BRD4 samples were multiplexed and sequenced in two lanes. ChIPseq input samples are also included. Data type and technology: RNAseq: SE 50bp sequenced on HiSeq2000/4000. ATACseq: SE 50bp sequenced on HiSeq2000/4000. ChIPseq: SE 50bp sequenced on HiSeq2000/4000.
- 6 samples
- DAC: EGAC00001000452
Data Transfer Agreement for the German Cancer Research Center
To request access to the dataset please start a Data Access Request via the EGA DAC Portal. You will receive a HIPO DACO Info Form to collect information about the request, which has to be filled and signed. Your request will be evaluated by the responsible Data Access Committee (DAC). As soon as a positive decision is made, you will be provided with a data transfer agreement (DTA). After the DTA has been fully signed, access to the requested data is granted.
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
Study ID | Study Title | Study Type |
---|---|---|
EGAS00001003953 | Other |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
ID | File Type | Size | Located in | |
---|---|---|---|---|
EGAF00002861455 | fastq.gz | 808.1 MB | ||
EGAF00002861457 | fastq.gz | 812.6 MB | ||
EGAF00002861459 | fastq.gz | 984.4 MB | ||
EGAF00002861461 | fastq.gz | 989.4 MB | ||
EGAF00002861462 | fastq.gz | 950.4 MB | ||
EGAF00002861465 | fastq.gz | 955.8 MB | ||
EGAF00002861579 | fastq.gz | 674.3 MB | ||
EGAF00002861580 | fastq.gz | 679.5 MB | ||
EGAF00002861581 | fastq.gz | 584.4 MB | ||
EGAF00002861582 | fastq.gz | 584.3 MB | ||
EGAF00002861763 | fastq.gz | 2.1 GB | ||
EGAF00002861764 | fastq.gz | 2.1 GB | ||
EGAF00002861765 | fastq.gz | 1.9 GB | ||
EGAF00002861766 | fastq.gz | 2.0 GB | ||
EGAF00002861767 | fastq.gz | 2.0 GB | ||
EGAF00002861768 | fastq.gz | 2.1 GB | ||
EGAF00002861769 | fastq.gz | 2.5 GB | ||
EGAF00002861770 | fastq.gz | 2.1 GB | ||
EGAF00002861771 | fastq.gz | 1.3 GB | ||
EGAF00002861772 | fastq.gz | 1.3 GB | ||
EGAF00002861773 | fastq.gz | 1.6 GB | ||
EGAF00002861774 | fastq.gz | 1.6 GB | ||
EGAF00002861775 | fastq.gz | 1.4 GB | ||
EGAF00002861776 | fastq.gz | 1.5 GB | ||
EGAF00002861777 | fastq.gz | 1.6 GB | ||
EGAF00002861778 | fastq.gz | 1.6 GB | ||
EGAF00002861779 | fastq.gz | 623.2 MB | ||
EGAF00002861780 | fastq.gz | 628.2 MB | ||
EGAF00002861790 | fastq.gz | 654.3 MB | ||
EGAF00002861791 | fastq.gz | 659.5 MB | ||
EGAF00002861792 | fastq.gz | 505.1 MB | ||
EGAF00002861793 | fastq.gz | 504.8 MB | ||
EGAF00002861803 | fastq.gz | 560.5 MB | ||
EGAF00002861804 | fastq.gz | 560.2 MB | ||
EGAF00002861805 | fastq.gz | 685.8 MB | ||
EGAF00002861806 | fastq.gz | 691.2 MB | ||
EGAF00002861807 | fastq.gz | 528.4 MB | ||
EGAF00002861808 | fastq.gz | 528.2 MB | ||
EGAF00002861809 | fastq.gz | 683.5 MB | ||
EGAF00002861810 | fastq.gz | 688.7 MB | ||
EGAF00002861811 | fastq.gz | 594.6 MB | ||
EGAF00002861812 | fastq.gz | 594.1 MB | ||
EGAF00002861813 | fastq.gz | 663.1 MB | ||
EGAF00002861814 | fastq.gz | 668.3 MB | ||
EGAF00002861815 | fastq.gz | 609.3 MB | ||
EGAF00002861816 | fastq.gz | 609.0 MB | ||
EGAF00002861817 | fastq.gz | 1.3 GB | ||
EGAF00002861818 | fastq.gz | 1.3 GB | ||
EGAF00002861819 | fastq.gz | 1.3 GB | ||
EGAF00002861820 | fastq.gz | 1.3 GB | ||
EGAF00002861821 | fastq.gz | 1.3 GB | ||
EGAF00002861822 | fastq.gz | 1.3 GB | ||
EGAF00002861823 | fastq.gz | 1.7 GB | ||
EGAF00002861824 | fastq.gz | 1.7 GB | ||
EGAF00002861836 | fastq.gz | 752.2 MB | ||
EGAF00002861837 | fastq.gz | 758.1 MB | ||
EGAF00002861838 | fastq.gz | 568.1 MB | ||
EGAF00002861839 | fastq.gz | 567.8 MB | ||
EGAF00002861847 | fastq.gz | 1.7 GB | ||
EGAF00002861848 | fastq.gz | 1.7 GB | ||
EGAF00002861849 | fastq.gz | 1.7 GB | ||
EGAF00002861850 | fastq.gz | 1.7 GB | ||
EGAF00002861851 | fastq.gz | 2.9 GB | ||
EGAF00002861852 | fastq.gz | 2.6 GB | ||
EGAF00002862093 | fastq.gz | 1.2 GB | ||
EGAF00002862095 | fastq.gz | 1.2 GB | ||
66 Files (77.6 GB) |