16S data from IBD patients

Bacterial 16S V4 rDNA was amplified using two differently barcoded V4 fusion primers. Pooled PCR samples were purified and paired-end sequenced on MiSeq instrument for 250 cycles. The steps from DNA quantification to sequencing were conducted at Second Genome Inc.

109 samples
DAC: EGAC00001001374
Technology: Illumina MiSeq

Access Policy1 Study Files

Metadata

Request Access

GRU-CC DUO:0000005 (version: 2019-01-07)general research use and clinical careThis data use limitation indicates that use is allowed for health/medical/biomedical purposes and other biological research, including the study of population origins or ancestry.

If you want access to the data of this project, please contact Judith Pignac-Kobinger(jpignac@med.miami.edu)

Application for Access to 16S Sequencing Data Applications for access to data can be submitted at any time. The UMiami Gastro team Data Access Committee will consider applications on a rolling basis and aim to provide a decision within 2 months of receipt. Name of applicant co-applicant(s) and Principle investigator including affiliations and contact details. Title of Project Sequencing Data Requested Please provide a clear description of the project and its specific aims in no more than 750 words. This should include specific details of what you plan to do with the data. (Use separate page) I have read, completed and returned the UMiami Gastro data access agreement Signed: Name: Date:

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID	Study Title	Study Type
EGAS00001003105	Microbial signatures and innate immune gene expression in lamina propria phagocytes of inflammatory bowel diseases patients	Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID	File Type	Size
EGAF00002044551	fastq.gz	75.5 MB
EGAF00002044552	fastq.gz	83.2 MB
EGAF00002044553	fastq.gz	45.7 MB
EGAF00002044554	fastq.gz	50.8 MB
EGAF00002044555	fastq.gz	69.7 MB
EGAF00002044556	fastq.gz	76.4 MB
EGAF00002044557	fastq.gz	45.8 MB
EGAF00002044558	fastq.gz	50.4 MB
EGAF00002044559	fastq.gz	55.5 MB
EGAF00002044560	fastq.gz	49.8 MB
EGAF00002044561	fastq.gz	73.5 MB
EGAF00002044562	fastq.gz	66.6 MB
EGAF00002044563	fastq.gz	84.7 MB
EGAF00002044564	fastq.gz	77.3 MB
EGAF00002044565	fastq.gz	91.1 MB
EGAF00002044566	fastq.gz	85.4 MB
EGAF00002044567	fastq.gz	59.5 MB
EGAF00002044568	fastq.gz	66.9 MB
EGAF00002044569	fastq.gz	74.9 MB
EGAF00002044570	fastq.gz	83.0 MB
EGAF00002044571	fastq.gz	34.8 MB
EGAF00002044572	fastq.gz	39.1 MB
EGAF00002044573	fastq.gz	26.0 MB
EGAF00002044574	fastq.gz	29.9 MB
EGAF00002044575	fastq.gz	44.1 MB
EGAF00002044576	fastq.gz	49.9 MB
EGAF00002044577	fastq.gz	47.0 MB
EGAF00002044578	fastq.gz	41.3 MB
EGAF00002044579	fastq.gz	18.9 MB
EGAF00002044580	fastq.gz	16.8 MB
EGAF00002044581	fastq.gz	64.7 MB
EGAF00002044582	fastq.gz	58.5 MB
EGAF00002044583	fastq.gz	39.0 MB
EGAF00002044584	fastq.gz	44.3 MB
EGAF00002044585	fastq.gz	41.6 MB
EGAF00002044586	fastq.gz	36.5 MB
EGAF00002044587	fastq.gz	58.8 MB
EGAF00002044588	fastq.gz	65.3 MB
EGAF00002044589	fastq.gz	45.0 MB
EGAF00002044590	fastq.gz	39.1 MB
EGAF00002044591	fastq.gz	50.6 MB
EGAF00002044592	fastq.gz	43.5 MB
EGAF00002044593	fastq.gz	35.9 MB
EGAF00002044594	fastq.gz	31.1 MB
EGAF00002044595	fastq.gz	43.9 MB
EGAF00002044596	fastq.gz	49.9 MB
EGAF00002044597	fastq.gz	46.6 MB
EGAF00002044598	fastq.gz	52.0 MB
EGAF00002044599	fastq.gz	38.9 MB
EGAF00002044600	fastq.gz	44.1 MB
EGAF00002044601	fastq.gz	48.7 MB
EGAF00002044602	fastq.gz	44.7 MB
EGAF00002044603	fastq.gz	62.7 MB
EGAF00002044604	fastq.gz	56.3 MB
EGAF00002044605	fastq.gz	51.2 MB
EGAF00002044606	fastq.gz	48.8 MB
EGAF00002044607	fastq.gz	73.0 MB
EGAF00002044608	fastq.gz	66.4 MB
EGAF00002044609	fastq.gz	57.4 MB
EGAF00002044610	fastq.gz	51.6 MB
EGAF00002044611	fastq.gz	53.2 MB
EGAF00002044612	fastq.gz	59.2 MB
EGAF00002044613	fastq.gz	37.3 MB
EGAF00002044614	fastq.gz	42.2 MB
EGAF00002044615	fastq.gz	61.9 MB
EGAF00002044616	fastq.gz	54.6 MB
EGAF00002044617	fastq.gz	27.6 MB
EGAF00002044618	fastq.gz	24.5 MB
EGAF00002044619	fastq.gz	62.5 MB
EGAF00002044620	fastq.gz	56.4 MB
EGAF00002044621	fastq.gz	45.2 MB
EGAF00002044622	fastq.gz	51.1 MB
EGAF00002044623	fastq.gz	40.7 MB
EGAF00002044624	fastq.gz	36.3 MB
EGAF00002044625	fastq.gz	43.0 MB
EGAF00002044626	fastq.gz	36.4 MB
EGAF00002044627	fastq.gz	17.2 MB
EGAF00002044628	fastq.gz	15.0 MB
EGAF00002044629	fastq.gz	46.4 MB
EGAF00002044630	fastq.gz	52.7 MB
EGAF00002044631	fastq.gz	46.8 MB
EGAF00002044632	fastq.gz	40.8 MB
EGAF00002044633	fastq.gz	48.4 MB
EGAF00002044634	fastq.gz	42.5 MB
EGAF00002044635	fastq.gz	34.3 MB
EGAF00002044636	fastq.gz	39.1 MB
EGAF00002044637	fastq.gz	42.5 MB
EGAF00002044638	fastq.gz	48.5 MB
EGAF00002044639	fastq.gz	54.8 MB
EGAF00002044640	fastq.gz	49.3 MB
EGAF00002044641	fastq.gz	50.9 MB
EGAF00002044642	fastq.gz	45.1 MB
EGAF00002044643	fastq.gz	64.8 MB
EGAF00002044644	fastq.gz	57.6 MB
EGAF00002044645	fastq.gz	68.4 MB
EGAF00002044646	fastq.gz	75.8 MB
EGAF00002044647	fastq.gz	48.7 MB
EGAF00002044648	fastq.gz	44.4 MB
EGAF00002044649	fastq.gz	72.4 MB
EGAF00002044650	fastq.gz	64.9 MB
EGAF00002044651	fastq.gz	71.0 MB
EGAF00002044652	fastq.gz	78.7 MB
EGAF00002044653	fastq.gz	55.2 MB
EGAF00002044654	fastq.gz	56.9 MB
EGAF00002044655	fastq.gz	52.9 MB
EGAF00002044656	fastq.gz	47.4 MB
EGAF00002044657	fastq.gz	62.0 MB
EGAF00002044658	fastq.gz	56.1 MB
EGAF00002044659	fastq.gz	63.8 MB
EGAF00002044660	fastq.gz	57.5 MB
EGAF00002044661	fastq.gz	63.9 MB
EGAF00002044662	fastq.gz	56.9 MB
EGAF00002044663	fastq.gz	39.0 MB
EGAF00002044664	fastq.gz	33.7 MB
EGAF00002044665	fastq.gz	23.9 MB
EGAF00002044666	fastq.gz	27.7 MB
EGAF00002044667	fastq.gz	30.8 MB
EGAF00002044668	fastq.gz	26.5 MB
EGAF00002044669	fastq.gz	21.9 MB
EGAF00002044670	fastq.gz	25.2 MB
EGAF00002044671	fastq.gz	60.6 MB
EGAF00002044672	fastq.gz	67.5 MB
EGAF00002044673	fastq.gz	55.6 MB
EGAF00002044674	fastq.gz	61.6 MB
EGAF00002044675	fastq.gz	22.5 MB
EGAF00002044676	fastq.gz	20.0 MB
EGAF00002044677	fastq.gz	48.8 MB
EGAF00002044678	fastq.gz	55.4 MB
EGAF00002044679	fastq.gz	45.0 MB
EGAF00002044680	fastq.gz	52.4 MB
EGAF00002044681	fastq.gz	44.2 MB
EGAF00002044682	fastq.gz	49.4 MB
EGAF00002044683	fastq.gz	28.0 MB
EGAF00002044684	fastq.gz	32.2 MB
EGAF00002044685	fastq.gz	57.7 MB
EGAF00002044686	fastq.gz	51.6 MB
EGAF00002044687	fastq.gz	9.5 MB
EGAF00002044688	fastq.gz	10.9 MB
EGAF00002044689	fastq.gz	33.4 MB
EGAF00002044690	fastq.gz	37.7 MB
EGAF00002044691	fastq.gz	35.0 MB
EGAF00002044692	fastq.gz	31.1 MB
EGAF00002044693	fastq.gz	76.7 MB
EGAF00002044694	fastq.gz	84.5 MB
EGAF00002044695	fastq.gz	52.1 MB
EGAF00002044696	fastq.gz	58.8 MB
EGAF00002044697	fastq.gz	31.1 MB
EGAF00002044698	fastq.gz	34.9 MB
EGAF00002044699	fastq.gz	51.6 MB
EGAF00002044700	fastq.gz	56.8 MB
EGAF00002044701	fastq.gz	58.3 MB
EGAF00002044702	fastq.gz	49.9 MB
EGAF00002044703	fastq.gz	40.7 MB
EGAF00002044704	fastq.gz	45.6 MB
EGAF00002044705	fastq.gz	30.0 MB
EGAF00002044706	fastq.gz	33.6 MB
EGAF00002044707	fastq.gz	46.2 MB
EGAF00002044708	fastq.gz	52.9 MB
EGAF00002044709	fastq.gz	23.3 MB
EGAF00002044710	fastq.gz	26.2 MB
EGAF00002044711	fastq.gz	44.5 MB
EGAF00002044712	fastq.gz	49.6 MB
EGAF00002044713	fastq.gz	50.4 MB
EGAF00002044714	fastq.gz	45.2 MB
EGAF00002044715	fastq.gz	12.3 MB
EGAF00002044716	fastq.gz	13.9 MB
EGAF00002044717	fastq.gz	72.7 MB
EGAF00002044718	fastq.gz	65.9 MB
EGAF00002044719	fastq.gz	64.3 MB
EGAF00002044720	fastq.gz	71.6 MB
EGAF00002044721	fastq.gz	50.7 MB
EGAF00002044722	fastq.gz	57.1 MB
EGAF00002044723	fastq.gz	29.3 MB
EGAF00002044724	fastq.gz	32.8 MB
EGAF00002044725	fastq.gz	51.9 MB
EGAF00002044726	fastq.gz	46.7 MB
EGAF00002044727	fastq.gz	27.7 MB
EGAF00002044728	fastq.gz	24.7 MB
EGAF00002044729	fastq.gz	23.7 MB
EGAF00002044730	fastq.gz	20.7 MB
EGAF00002044731	fastq.gz	24.6 MB
EGAF00002044732	fastq.gz	21.4 MB
EGAF00002044733	fastq.gz	11.1 MB
EGAF00002044734	fastq.gz	13.0 MB
EGAF00002044735	fastq.gz	42.9 MB
EGAF00002044736	fastq.gz	47.6 MB
EGAF00002044737	fastq.gz	53.9 MB
EGAF00002044738	fastq.gz	47.7 MB
EGAF00002044739	fastq.gz	36.1 MB
EGAF00002044740	fastq.gz	39.9 MB
EGAF00002044741	fastq.gz	31.2 MB
EGAF00002044742	fastq.gz	36.3 MB
EGAF00002044743	fastq.gz	42.9 MB
EGAF00002044744	fastq.gz	38.1 MB
EGAF00002044745	fastq.gz	34.2 MB
EGAF00002044746	fastq.gz	30.3 MB
EGAF00002044747	fastq.gz	12.7 MB
EGAF00002044748	fastq.gz	11.3 MB
EGAF00002044749	fastq.gz	42.6 MB
EGAF00002044750	fastq.gz	47.8 MB
EGAF00002044751	fastq.gz	49.9 MB
EGAF00002044752	fastq.gz	44.5 MB
EGAF00002044753	fastq.gz	47.4 MB
EGAF00002044754	fastq.gz	52.7 MB
EGAF00002044755	fastq.gz	41.4 MB
EGAF00002044756	fastq.gz	46.9 MB
EGAF00002044757	fastq.gz	13.3 MB
EGAF00002044758	fastq.gz	11.6 MB
EGAF00002044759	fastq.gz	78.7 MB
EGAF00002044760	fastq.gz	72.8 MB
EGAF00002044761	fastq.gz	60.7 MB
EGAF00002044762	fastq.gz	55.1 MB
EGAF00002044763	fastq.gz	69.0 MB
EGAF00002044764	fastq.gz	62.0 MB
EGAF00002044765	fastq.gz	27.4 MB
EGAF00002044766	fastq.gz	24.4 MB
EGAF00002044767	fastq.gz	72.6 MB
EGAF00002044768	fastq.gz	66.7 MB
EGAF00002053509	fastq.gz	110.0 MB
EGAF00002053510	fastq.gz	101.7 MB
220 Files (10.5 GB)