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RNA-seq, WGS and WES of Hepatocellular carcinomas, enriched in fibrolamellar carcinomas

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FunGeST - Functional Genomics from cancer research to personalized medicine

DATA ACCESS AGREEMENT These terms and conditions govern access to the managed access datasets (details of which are set out in Appendix I) to which the Data Recipient has requested access. The Data Recipient agrees to be bound by these terms and conditions. Definitions GDPR: This DAA makes both parties compliant with the Regulation (EU) 2016/679 of the European Parliament and of the Council, that is, the General Data Protection Regulation (herein referred to as the ‘GDPR’). Data: Refers to managed controlled access datasets (the Data). Under this Agreement, the Data is pseudonymised. Data Access/Transfer: Refers to an Institution’s right to request access to the Data and retrieve them from the Data Controller’s Institution upon approval of this hDAA by the corresponding DAC within the Data Controller’s Institution. Data Handling: Refers to an Institution’s ability to analyse and manipulate the Data within its own computer network. Data Controller(s): Refers to an Institution, responsible for the generation of the Data and its pseudonymisation. A key-code permitting relinkage to Data Subjects is kept by the Data Controller(s). Data Subject: Refers to any individual who is the source of any Data covered by this Agreement. Data Recipient (‘You’): Refers to the Institution who requests Access to the Data through this Agreement. Authorised Personnel: The individual(s) at the Institution requesting Access to the Data. Research Project: The Project for which You have requested Access to the Data. Publications: Refers, without limitation, to any and all articles published in print journals, electronic journals, reviews, books, posters, and other written and verbal presentations of Research that have been accepted by peer review. FunGeST: This DAA was written for the FunGeST functional genomics projects headed at the CRC (Centre de recherche des Cordeliers, Paris, France) 1. You, the Data Recipient, agree to only use the Data for the Purpose of the Project, for Research Purposes only and not in any profit-making activities. You further agrees that it will only use these Data for Research Purposes which are within the limitations (if any) set out in Appendix I; 2. You agree to preserve, at all times, the confidentiality of information and Data pertaining to Data Subjects. You undertake not to use or attempt to use the Data to compromise or otherwise infringe the confidentiality of information on Data Subjects and their right to privacy. Without prejudice to the generality of the foregoing, you agree to use at least the measures set out in Appendix I to protect these Data; 3. You agree not to attempt to identify Data Subjects; 4. You agree not to link or combine the Data to other information or archived data available in a way that could re-identify the Data Subjects, even if access to that data has been formally granted to you or is freely available without restriction. 5. You and your Authorised Personnel agree to take into consideration any usage restrictions (if any), stemming from consent, i.e. the appropriate lawful basis for processing the Data, as well as any usage restrictions stemming from any applicable internal policies of your Institution; 6. You agree that in handling this Data You will follow an up-to-date information technology (IT) policy that must include, at a minimum, the following items: a. Logging and auditing of Access to the Data and to the computer network; b. Password protection to computer network and/or strong data encryption; c. Virus and malware protection to computers on the computer network; d. Secure backup procedure; 7. You acknowledge that Access to the Data is granted for the duration of the Project described in Section I, and these restrictions are specific to that particular Project. Any utilization of the Data for a different Project will require prior approval through a new Agreement. 8. You recognize that nothing in this Agreement shall operate to transfer to You any intellectual property rights to the Data. 9. You agree not to make intellectual property claims on the Data and not to use intellectual property protection in ways that would prevent or block Access to, or use of, any element of the Data. 10. You can elect to perform further Research that would add intellectual and resource capital to the Data, and decide to obtain intellectual property rights on these downstream discoveries. In this case, You agree to implement licensing policies that will not obstruct further Research, following the Organisation for Economic Co-operation and Development Guidelines. 11. You agree that the Research Project 1) bears no legal responsibility for the accuracy or comprehensiveness of the Data; 2) accepts no liability for indirect, consequential, or incidental damages or losses arising from use of the Data; and 3) bears no responsibility for the further analysis or interpretation of these Data over and above that published by the Controller(s). 12. You agree to hold the Data Subject(s) and Data Controller(s) harmless and to defend and indemnify all these parties against all liabilities, demands, damages, expenses, and losses arising out of Your use for any Purpose of the Data. 13. You agree to a moratorium on publishing global analyses of the dataset until the Data Controller(s) have published their own global analysis or twelve (12) months, the maximum, have passed from the time the Data were deposited, whichever occurs first. You acknowledge that prompt publication or public disclosure of the results of the Research Project is encouraged. You also agree that by publishing Your global analyses of the Data, you will not disclose any results generated from the Data. 14. You agree to acknowledge the contribution of the Data Controller(s) in all oral and written presentations, disclosures, and Publications resulting from all analyses of the Data. 15. You agree to use the Data in Your laboratory. Any Authorised Personnel shall work under Your direct supervision. You agree to distribute a copy of these terms to the Authorised Personnel. 16. You may not transfer any information included in the Data to anyone unless specifically designated in the Research Project, or by prior specific or general written authorisation of the Data Controller(s) responsible for the generation of the original Data in each case. 17. You may not transfer the Data itself to anyone outside the Institution, unless the Controller(s) has (have) approved such transfer and its terms in writing. 18. Should You wish to share the Data with an external collaborator, the external collaborator must complete a separate Data Access Agreement. 19. You shall ensure that ‘all’ who have Access to the Data, namely You and Your Authorised Personnel, will be listed out, and are made aware and be bound by the terms of this Agreement. You remain solely and fully responsible for Your Authorised Personnel’s non-compliance with the provision of the Agreement and/or applicable laws. 20. In case of a breach of security resulting from ‘accidental’ use of Data by You and Your Authorised Personnel, which leads to disclosure of Data, then You must report this to Data Controller(s) within 72 hours maximum, and follow any relevant rule as provided by the GDPR. 21. In case of a ‘non-accidental or minor’ breach of DAA by You You will further be required to destroy any Data held. 22. You accept that this Agreement will terminate immediately upon ‘any’ breach by You, or its termination (see Section I). 23. You endeavour to settle any dispute with the Data Controller(s) amicably. If you are unable to reach an Agreement, you will meet and negotiate in good faith in an effort to resolve the issue. If the issue has not been resolved within a reasonable period (e.g. 30 calendar days), you are both entitled to submit it for resolution by an arbitrator. 24. Further, the language of the proceedings will be ‘English’ if not otherwise agreed. The award of the arbitration will be final and binding upon the parties concerned. 25. This Agreement (and any dispute, controversy, proceedings, or claim of whatever nature arising out of it or its formation) shall be interpreted, governed by and construed in accordance with the Laws of France, and shall be subject to the exclusive jurisdiction of the French Courts.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00002558797 bam 4.7 GB
EGAF00002558798 bam 5.1 GB
EGAF00002558799 bam 5.5 GB
EGAF00002558800 bam 5.3 GB
EGAF00002558801 bam 7.4 GB
EGAF00002558802 bam 4.7 GB
EGAF00002558803 bam 5.5 GB
EGAF00002558804 bam 5.2 GB
EGAF00002558805 bam 6.2 GB
EGAF00002558806 bam 3.6 GB
EGAF00002558807 bam 5.8 GB
EGAF00002558808 bam 6.4 GB
EGAF00002558809 bam 8.3 GB
EGAF00002558810 bam 5.2 GB
EGAF00002558811 bam 4.8 GB
EGAF00002558812 bam 8.9 GB
EGAF00002558813 bam 6.7 GB
EGAF00002558814 bam 5.6 GB
EGAF00002558815 bam 3.3 GB
EGAF00002558816 bam 4.8 GB
EGAF00002558817 bam 6.2 GB
EGAF00002558818 bam 4.6 GB
EGAF00002558819 bam 10.5 GB
EGAF00002558820 bam 5.0 GB
EGAF00002558821 bam 8.0 GB
EGAF00002558822 bam 4.3 GB
EGAF00002558823 bam 8.7 GB
EGAF00002558824 bam 8.3 GB
EGAF00002558825 bam 4.6 GB
EGAF00002558826 bam 5.1 GB
EGAF00002558827 bam 5.1 GB
EGAF00002558828 bam 5.5 GB
EGAF00002558829 bam 5.2 GB
EGAF00002558830 bam 6.9 GB
EGAF00002558831 bam 5.0 GB
EGAF00002558832 bam 5.3 GB
EGAF00002558833 bam 4.9 GB
EGAF00002558834 bam 8.7 GB
EGAF00002558835 bam 6.5 GB
EGAF00002558836 bam 5.1 GB
EGAF00002558837 bam 6.2 GB
EGAF00002558838 bam 5.9 GB
EGAF00002558839 bam 4.2 GB
EGAF00002558840 bam 4.6 GB
EGAF00002558841 bam 5.6 GB
EGAF00002558842 bam 5.2 GB
EGAF00002558843 bam 5.4 GB
EGAF00002558844 bam 6.5 GB
EGAF00002558845 bam 6.6 GB
EGAF00002558846 bam 5.1 GB
EGAF00002558847 bam 6.2 GB
EGAF00002558848 bam 5.2 GB
EGAF00002558849 bam 4.6 GB
EGAF00002558850 bam 5.0 GB
EGAF00002558851 bam 6.7 GB
EGAF00002558852 bam 4.1 GB
EGAF00002558853 bam 6.5 GB
EGAF00002558854 bam 5.6 GB
EGAF00002558855 bam 6.5 GB
EGAF00002558856 bam 4.7 GB
EGAF00002558857 bam 6.3 GB
EGAF00002558858 bam 13.0 GB
EGAF00002558859 bam 6.6 GB
EGAF00002558860 bam 7.6 GB
EGAF00002558861 bam 4.8 GB
EGAF00002558862 bam 6.1 GB
EGAF00002558863 bam 4.4 GB
EGAF00002558864 bam 3.8 GB
EGAF00002558865 bam 5.8 GB
EGAF00002558866 bam 5.4 GB
EGAF00002558867 bam 16.2 GB
EGAF00002558868 bam 6.1 GB
EGAF00002558869 bam 16.1 GB
EGAF00002558870 bam 17.6 GB
EGAF00002558871 bam 5.9 GB
EGAF00002558872 bam 5.8 GB
EGAF00002558873 bam 6.0 GB
EGAF00002558874 bam 5.8 GB
EGAF00002558875 bam 7.3 GB
EGAF00002558876 bam 4.9 GB
EGAF00002558877 bam 5.4 GB
EGAF00002558878 bam 3.8 GB
EGAF00002558879 bam 3.0 GB
EGAF00002558880 bam 3.3 GB
EGAF00002558881 bam 3.6 GB
EGAF00002558882 bam 2.6 GB
EGAF00002558883 bam 3.0 GB
EGAF00002558884 bam 3.2 GB
EGAF00002558885 bam 3.1 GB
EGAF00002558886 bam 4.9 GB
EGAF00002558887 bam 3.8 GB
EGAF00002558888 bam 3.1 GB
EGAF00002558889 bam 3.7 GB
EGAF00002558890 bam 2.9 GB
EGAF00002558891 bam 2.7 GB
EGAF00002558892 bam 3.0 GB
EGAF00002558893 bam 5.8 GB
EGAF00002558894 bam 3.3 GB
EGAF00002558895 bam 5.3 GB
EGAF00002558896 bam 2.8 GB
EGAF00002558897 bam 5.8 GB
EGAF00002558898 bam 2.9 GB
EGAF00002558899 bam 6.3 GB
EGAF00002558900 bam 13.7 GB
EGAF00002558901 bam 5.1 GB
EGAF00002558902 bam 4.4 GB
EGAF00002558903 bam 2.6 GB
EGAF00002558904 bam 4.7 GB
EGAF00002558905 bam 2.8 GB
EGAF00002558906 bam 2.2 GB
EGAF00002558907 bam 5.9 GB
EGAF00002558908 bam 2.7 GB
EGAF00002558909 bam 17.4 GB
EGAF00002558910 bam 3.3 GB
EGAF00002558911 bam 16.1 GB
EGAF00002558912 bam 16.2 GB
EGAF00002558913 bam 3.5 GB
EGAF00002558914 bam 3.1 GB
EGAF00002558915 bam 2.6 GB
EGAF00002558916 bam 3.1 GB
EGAF00002558917 bam 5.4 GB
EGAF00002558918 bam 3.1 GB
EGAF00002558919 bam 3.4 GB
EGAF00002558920 bam 385.7 GB
EGAF00002558921 bam 389.7 GB
EGAF00002558922 bam 425.3 GB
EGAF00002558923 bam 134.7 GB
EGAF00002558924 bam 130.3 GB
EGAF00002558925 bam 145.9 GB
EGAF00002558926 bam 5.9 GB
EGAF00002558927 bam 4.9 GB
EGAF00002558928 bam 6.1 GB
EGAF00002558929 bam 4.5 GB
EGAF00002558930 bam 5.3 GB
EGAF00002558931 bam 5.9 GB
EGAF00002558932 bam 5.4 GB
EGAF00002558933 bam 5.4 GB
EGAF00002558934 bam 5.5 GB
EGAF00002558935 bam 4.6 GB
EGAF00002558936 bam 5.0 GB
EGAF00002558937 bam 5.3 GB
EGAF00002558938 bam 5.0 GB
EGAF00002558939 bam 4.8 GB
EGAF00002558940 bam 6.3 GB
EGAF00002558941 bam 6.2 GB
EGAF00002558942 bam 7.6 GB
EGAF00002558943 bam 6.6 GB
EGAF00002558944 bam 5.7 GB
EGAF00002558945 bam 5.9 GB
EGAF00002558946 bam 6.4 GB
EGAF00002558947 bam 6.6 GB
EGAF00002558948 bam 5.8 GB
EGAF00002558949 bam 5.7 GB
EGAF00002558950 bam 5.5 GB
EGAF00002558951 bam 9.9 GB
EGAF00002558952 bam 5.5 GB
EGAF00002558953 bam 5.2 GB
157 Files (2.5 TB)