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Genetic landscape of SMM

Identifying high risk smoldering myeloma patients and progression mechanism is a prerequisite to implement effective inception strategies and curve myeloma related morbidity and mortality. We hypothesize that genomics may help identify determinants of progression that may help predict outcome and offer effective chemo preventive targets. Eighty-two patients underwent a custom targeted panel sequencing with an additional capture for the translocation loci. These results were compared to 223 newly diagnosed patients (EGAS00001003223 and EGAD00001004117) and 17 MGUS and 10 early myeloma patients. DNA was obtained from either CD138+ cells from the bone marrow of multiple myeloma patients (tumor) or from stem cell harvests or peripheral blood cells from the same patient (control). 100 ng of DNA was fragmented, end-repaired, and adapters ligated using the HyperPlus kit (KAPA Biosystems). After PCR amplification the libraries were hybridized with probes against either a targeted panel consisting of 140 genes and chromosomal regions (Nimblegen) using SeqCap reagents (Nimblegen). Hybridized libraries underwent further amplification before being sequenced on a NextSeq500 (Illumina) using 75 bp paired end reads. Overall, these data highlight the importance of dysregulation of the MAPK pathway in the progression to MM.

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UAMS - Deidentified Data Transfer Agreement 2016

Terms subject to change based on each transfer 2016 Data Transfer Agreement This Data Transfer Agreement (this "Agreement") is entered into effective as of the last signature date of this Agreement (“Effective Date”) by and between [company] ("Recipient"),and the Board of Trustees of the University of Arkansas acting for and on behalf of the University of Arkansas for Medical Sciences ("Provider") in order to document the transferof certain de-identified data, as defined below and the mutual covenants and promises hereinafter set forth as agreed to by Recipient and Provider. Provider and Recipient maybe referred to herein individually as a "Party" or collectively as the "Parties".WHEREAS, the Parties agree that this Agreement shall govern only the transfer of the Study Data, as defined herein, if the Parties agree in writing to same. 1. "Study Data" shall be defined to mean de-identified data collected under informed consent related to the research study entitled [please insert title]. 2. Provider certifies that the Study Data shall be provided in a de-identified fashion. Under no circumstances shall Provider provide Recipient with the name, address, social security number, or any other identifier which would permit Recipient to identify the research subjects from whom such Study Data was collected. The Recipient, through [recipient scientist name], certifies that they neither have nor will seek to obtain information from Provider that identifies or can be used to identify or link de-identified data to any research subject, and in the event that either receives any PHI, such PHI shall be kept confidential, not used or disclosed, and shall be immediately returned to Provider. 3. Subject to, and in accordance with terms set in this Agreement, Recipient shall use Study Data for the following research purposes only (and for no other purpose): [indicate purpose/research/reference number if applicable] 4. Recipient shall only disclose Study Data to Recipient’s employees who have a need to know and who are directly responsible for the activities related to the Purpose. The Recipient, through [recipient scientist name], who shall serve as the Principal Investigator of the research study utilizing the Study Data, will ensure that all such parties are informed of the terms and conditions under this Agreement. 5. Recipient shall not use or further disclose the Study Data other than as permitted or required by this Agreement or as otherwise required by law. Recipient shall report to Provider immediately within upon Recipient’s discovery of any unauthorized use or disclosure of the Study Data not provided for by this Agreement. Recipient shall provide the following information: (1) the nature of the use or disclosure; (2) the information used or disclosed; (3) who made the use or disclosure; and (4) what corrective action will be taken by Recipient as a result of the use or disclosure. Recipient shall take any other actions available to it to mitigate any detrimental effects of the use or disclosure. 6. Recipient and its employees shall not identify or attempt to identify the individual(s) to whom the Study Data pertains or contact or attempt to contact the individual(s) who Recipient believes to be the subject of any Study Data. The obligations set forth in this Section 6 shall survive the termination or expiration of this Agreement for any reason. 7. As principal investigator, [recipient scientist name] has agreed to provide any results gained from the analysis of the Study Data with Provider. Provider Institution shall maintain these results in confidence pending publication and/or presentation of the results of the analysis being conducted on the Study Data. However, if Recipient has not published within six (6) months of the completion of the Study at Recipient’s institution, Provider shall have the right to publish or present independently any results from its work at Provider’s institution. [this term will change to joint publication if that is what is agreed]. 8. Subject to Applicable Laws, none of Provider, Principal Investigator, or Recipient shall use the name, trademark, trade name or logo of the other in any publication, press release, or promotional material with respect to the Study without the prior written approval of the other party; provided, however, that Recipient shall have the right to identify Provider as the site at which the Study Data was generated and to identify those individuals responsible for conducting the Study. Provider retains the right to use Recipient’s name, and a non-confidential descriptor, on any and all funding applications it may seek in the future. 9. This Agreement may be terminated by either Party, for any reason, upon thirty (30) days' advance written notice to the other Party, and this Agreement may be terminated upon mutual written agreement signed by the authorized representatives of both of the Parties. Notwithstanding anything to the contrary, Recipient and [recipient scientist name] shall not use or disclose any information provided by Provider except in accordance with the terms of this Agreement and applicable law. This obligation shall extend in perpetuity. Recipient agrees that upon termination of this Agreement, Recipient shall, at its expense, (a) return or destroy all Study Data received from Provider and retain no copies of such Study Data. 10. Any notice required or permitted hereunder shall be in writing and shall be deemed given as of the date it is: (i) delivered by hand; (ii) received by registered or certified mail, postage prepaid, return receipt requested; (iii) confirmed as received if by facsimile; or (iv) received by nationally recognized, overnight courier, and addressed to the party to receive such notice at the address set forth below, or such other address as is subsequently specified in writing. If to Recipient: [ please provide ] If to Provider: University of Arkansas for Medical Sciences By Post: 4301 West Markham Drive, MS#860 Little Rock, AR 72205 By Courier: Ed II, 5th Floor, Suite 104 Little Rock, AR 72205 Attn: Sr. Research Contracts Attorney 11. Recipient and Provider shall not assign or transfer any rights or obligations hereunder, or any part hereof, without the prior written consent of the other Party. 12. Entire Agreement. This Agreement constitutes the entire agreement and understanding between the Parties and supersedes any prior or contemporaneous negotiations, agreements, understandings, or arrangements of any nature or kind with respect to the subject matter herein. 13. This Agreement may be executed simultaneously in any number of counterparts (including scanned copies of signature in portable document format “pdf” and delivered via electronic mail), each of which shall be deemed an original and all of which taken together shall constitute one and the same instrument. IN WITNESS WHEREOF, the parties have executed this Data Transfer Agreement as of the [Effective Date] Board of Trustees of the University of Arkansas [Name of Recpient] Acting For And On Behalf Of The University of Arkansas for Medical Sciences By: ___________________________________ By: ________________________ Name: Suzanne Alstadt Name: Title: Director, Office of Research and Title: Sponsored Programs Date: _________________________________ Date: ______________________ READ AND UNDERSTOOD BY PRINCIPAL INVESTIGATOR By: ________________________________ Date: _______________________________

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00002554083 bam 3.7 GB
EGAF00002554084 bam 3.7 GB
EGAF00002554085 bam 11.9 GB
EGAF00002554086 bam 8.3 GB
EGAF00002554087 bam 4.3 GB
EGAF00002554088 bam 4.4 GB
EGAF00002554089 bam 4.5 GB
EGAF00002554090 bam 4.4 GB
EGAF00002554091 bam 4.3 GB
EGAF00002554092 bam 4.4 GB
EGAF00002554093 bam 4.2 GB
EGAF00002554094 bam 4.2 GB
EGAF00002554095 bam 3.9 GB
EGAF00002554096 bam 4.0 GB
EGAF00002554097 bam 10.7 GB
EGAF00002554098 bam 3.9 GB
EGAF00002554099 bam 5.3 GB
EGAF00002554100 bam 4.0 GB
EGAF00002554101 bam 4.2 GB
EGAF00002554102 bam 4.3 GB
EGAF00002554103 bam 4.2 GB
EGAF00002554104 bam 3.9 GB
EGAF00002554105 bam 4.6 GB
EGAF00002554106 bam 4.1 GB
EGAF00002554107 bam 5.4 GB
EGAF00002554108 bam 5.0 GB
EGAF00002554109 bam 4.7 GB
EGAF00002554110 bam 4.1 GB
EGAF00002554111 bam 5.2 GB
EGAF00002554112 bam 4.1 GB
EGAF00002554113 bam 5.5 GB
EGAF00002554114 bam 5.1 GB
EGAF00002554115 bam 4.7 GB
EGAF00002554116 bam 4.9 GB
EGAF00002554117 bam 4.4 GB
EGAF00002554118 bam 3.6 GB
EGAF00002554119 bam 5.4 GB
EGAF00002554120 bam 3.8 GB
EGAF00002554121 bam 4.8 GB
EGAF00002554122 bam 4.0 GB
EGAF00002554123 bam 4.3 GB
EGAF00002554124 bam 2.0 GB
EGAF00002554125 bam 4.2 GB
EGAF00002554126 bam 4.6 GB
EGAF00002554127 bam 3.8 GB
EGAF00002554128 bam 3.9 GB
EGAF00002554129 bam 4.4 GB
EGAF00002554130 bam 4.3 GB
EGAF00002554131 bam 3.7 GB
EGAF00002554132 bam 2.6 GB
EGAF00002554133 bam 2.4 GB
EGAF00002554134 bam 4.3 GB
EGAF00002554135 bam 3.9 GB
EGAF00002554136 bam 4.1 GB
EGAF00002554137 bam 3.7 GB
EGAF00002554138 bam 6.9 GB
EGAF00002554139 bam 3.0 GB
EGAF00002554140 bam 4.6 GB
EGAF00002554141 bam 3.5 GB
EGAF00002554142 bam 2.3 GB
EGAF00002554143 bam 1.6 GB
EGAF00002554144 bam 4.1 GB
EGAF00002554145 bam 5.5 GB
EGAF00002554146 bam 5.0 GB
EGAF00002554147 bam 4.1 GB
EGAF00002554148 bam 4.1 GB
EGAF00002554149 bam 5.6 GB
EGAF00002554150 bam 4.0 GB
EGAF00002554151 bam 5.2 GB
EGAF00002554152 bam 4.3 GB
EGAF00002554153 bam 4.6 GB
EGAF00002554154 bam 3.8 GB
EGAF00002554155 bam 3.9 GB
EGAF00002554156 bam 3.6 GB
EGAF00002554157 bam 4.2 GB
EGAF00002554158 bam 4.3 GB
EGAF00002554159 bam 3.7 GB
EGAF00002554160 bam 4.0 GB
EGAF00002554161 bam 4.7 GB
EGAF00002554162 bam 3.9 GB
EGAF00002554163 bam 4.2 GB
EGAF00002554164 bam 4.2 GB
EGAF00002554165 bam 4.7 GB
EGAF00002554166 bam 3.9 GB
EGAF00002554167 bam 3.1 GB
EGAF00002554168 bam 2.5 GB
EGAF00002554169 bam 1.7 GB
EGAF00002554170 bam 4.2 GB
EGAF00002554171 bam 1.4 GB
EGAF00002554172 bam 3.0 GB
EGAF00002554173 bam 3.0 GB
EGAF00002554174 bam 4.4 GB
EGAF00002554175 bam 3.6 GB
EGAF00002554176 bam 3.9 GB
EGAF00002554177 bam 4.3 GB
EGAF00002554178 bam 3.9 GB
EGAF00002554179 bam 3.5 GB
EGAF00002554180 bam 3.4 GB
EGAF00002554181 bam 4.4 GB
EGAF00002554182 bam 3.4 GB
EGAF00002554183 bam 4.7 GB
EGAF00002554184 bam 4.7 GB
EGAF00002554185 bam 4.5 GB
EGAF00002554186 bam 4.2 GB
EGAF00002554187 bam 4.9 GB
EGAF00002554188 bam 4.1 GB
EGAF00002554189 bam 6.0 GB
EGAF00002554190 bam 4.0 GB
EGAF00002554191 bam 4.4 GB
EGAF00002554192 bam 3.1 GB
EGAF00002554193 bam 3.7 GB
EGAF00002554194 bam 3.9 GB
EGAF00002554195 bam 4.4 GB
EGAF00002554196 bam 4.4 GB
EGAF00002554197 bam 4.8 GB
EGAF00002554198 bam 3.5 GB
EGAF00002554199 bam 4.7 GB
EGAF00002554200 bam 4.6 GB
EGAF00002554201 bam 3.6 GB
EGAF00002554202 bam 3.7 GB
EGAF00002554203 bam 5.7 GB
EGAF00002554204 bam 3.3 GB
EGAF00002554205 bam 4.6 GB
EGAF00002554206 bam 3.9 GB
EGAF00002554207 bam 4.4 GB
EGAF00002554208 bam 4.6 GB
EGAF00002554209 bam 4.2 GB
EGAF00002554210 bam 4.7 GB
EGAF00002554211 bam 3.6 GB
EGAF00002554212 bam 5.3 GB
EGAF00002554213 bam 4.3 GB
EGAF00002554214 bam 3.8 GB
EGAF00002554215 bam 5.0 GB
EGAF00002554216 bam 3.7 GB
EGAF00002554217 bam 4.7 GB
EGAF00002554218 bam 4.4 GB
EGAF00002554219 bam 4.2 GB
EGAF00002554220 bam 4.2 GB
EGAF00002554221 bam 5.0 GB
EGAF00002554222 bam 4.2 GB
EGAF00002554223 bam 5.0 GB
EGAF00002554224 bam 3.3 GB
EGAF00002554225 bam 4.5 GB
EGAF00002554226 bam 3.5 GB
EGAF00002554227 bam 4.8 GB
EGAF00002554228 bam 4.5 GB
EGAF00002554229 bam 3.6 GB
EGAF00002554230 bam 4.2 GB
EGAF00002554231 bam 3.3 GB
EGAF00002554232 bam 4.3 GB
EGAF00002554233 bam 3.9 GB
EGAF00002554234 bam 4.5 GB
EGAF00002554235 bam 3.9 GB
EGAF00002554236 bam 4.8 GB
EGAF00002554237 bam 3.8 GB
EGAF00002554238 bam 4.4 GB
EGAF00002554239 bam 3.6 GB
EGAF00002554240 bam 5.0 GB
EGAF00002554241 bam 3.7 GB
EGAF00002554242 bam 4.1 GB
EGAF00002554243 bam 3.7 GB
EGAF00002554244 bam 4.1 GB
EGAF00002554245 bam 4.1 GB
EGAF00002554246 bam 3.7 GB
EGAF00002554247 bam 4.0 GB
EGAF00002554248 bam 4.2 GB
EGAF00002554249 bam 3.2 GB
EGAF00002554250 bam 4.0 GB
EGAF00002554251 bam 3.4 GB
EGAF00002554252 bam 4.6 GB
EGAF00002554253 bam 4.3 GB
EGAF00002554254 bam 4.2 GB
EGAF00002554255 bam 4.1 GB
EGAF00002554256 bam 4.9 GB
EGAF00002554257 bam 4.2 GB
EGAF00002554258 bam 5.0 GB
EGAF00002554259 bam 3.7 GB
EGAF00002554260 bam 5.2 GB
EGAF00002554261 bam 5.0 GB
EGAF00002554262 bam 4.7 GB
EGAF00002554263 bam 4.3 GB
EGAF00002554264 bam 5.9 GB
EGAF00002554265 bam 4.4 GB
EGAF00002554266 bam 5.0 GB
EGAF00002554267 bam 5.0 GB
EGAF00002554268 bam 4.5 GB
EGAF00002554269 bam 4.6 GB
EGAF00002554270 bam 4.0 GB
EGAF00002554271 bam 4.5 GB
EGAF00002554272 bam 4.5 GB
EGAF00002554273 bam 5.1 GB
EGAF00002554274 bam 3.7 GB
EGAF00002554275 bam 4.3 GB
EGAF00002554276 bam 4.2 GB
EGAF00002554277 bam 5.2 GB
EGAF00002554278 bam 4.0 GB
EGAF00002554279 bam 4.1 GB
EGAF00002554280 bam 4.2 GB
EGAF00002554281 bam 4.6 GB
EGAF00002554282 bam 3.5 GB
EGAF00002554283 bam 5.4 GB
EGAF00002554284 bam 5.0 GB
EGAF00002554285 bam 4.6 GB
EGAF00002554286 bam 3.6 GB
EGAF00002554287 bam 4.4 GB
EGAF00002554288 bam 4.5 GB
EGAF00002554289 bam 4.3 GB
EGAF00002554290 bam 3.9 GB
EGAF00002554291 bam 4.4 GB
EGAF00002554292 bam 4.1 GB
EGAF00002554293 bam 4.9 GB
EGAF00002554294 bam 4.1 GB
EGAF00002554295 bam 4.4 GB
EGAF00002554296 bam 4.0 GB
EGAF00002554297 bam 3.7 GB
EGAF00002554298 bam 4.7 GB
EGAF00002554299 bam 4.3 GB
EGAF00002554300 bam 4.3 GB
EGAF00002554301 bam 4.5 GB
EGAF00002554302 bam 4.4 GB
EGAF00002554303 bam 2.6 GB
EGAF00002554304 bam 2.7 GB
EGAF00002554305 bam 4.8 GB
EGAF00002554306 bam 4.7 GB
EGAF00002554307 bam 4.4 GB
EGAF00002554308 bam 3.9 GB
EGAF00002554309 bam 4.2 GB
EGAF00002554310 bam 3.5 GB
EGAF00002554311 bam 4.0 GB
EGAF00002554312 bam 4.0 GB
EGAF00002554313 bam 4.3 GB
EGAF00002554314 bam 4.1 GB
EGAF00002554315 bam 4.1 GB
EGAF00002554316 bam 5.4 GB
EGAF00002554317 bam 4.9 GB
EGAF00002554318 bam 5.1 GB
EGAF00002554319 bam 5.0 GB
EGAF00002554320 bam 3.7 GB
EGAF00002554321 bam 3.7 GB
EGAF00002554322 bam 4.4 GB
EGAF00002554323 bam 4.7 GB
241 Files (1.0 TB)