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IBD-dysplasia

This data set concerns DNA copy number alterations and mutation data from 30 IBD-associated dysplastic lesions and 13 IBD-associated cancers. DNA was isolated from formalin-fixed, paraffin-embedded material. Whole-genome shallow seq and Truseq amplicon cancer panel (Illumina) were used for detection of DNA copy number alterations and gene mutations, respectively.

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Data Access Policy of NKI-AvL TGO

Data Access Policy of NKI-AvL TGO To request access to this specific dataset, and in order to comply with local and (inter)national regulations, please follow the steps described below: 1. Please fill in the information requested on the website: ega.nki.nl 2. Once you’ve submitted this information, the Data Access Committee (DAC) and the NKI-AVL Internal Review Board (IRB) will review your planned study and its goals and judge whether it is competing with our interests. The DAC and IRB can approve or decline your request or request a modification. 3. Upon approval by the IRB, you will receive a Data Transfer Agreement (DTA) that needs to be filled in and signed by the legal representative of your institute / company. 4. Upon acceptance of a signed DTA by our Knowledge Transfer & Contracting Office (KT&C), your party will receive a copy signed by our legal representative, and you will need to submit your access request via the EGA website

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
Cancer Genomics

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00002542347 bam 451.6 MB
EGAF00002542348 bam 464.1 MB
EGAF00002542349 bam 363.0 MB
EGAF00002542350 bam 472.2 MB
EGAF00002542351 bam 521.1 MB
EGAF00002542352 bam 545.6 MB
EGAF00002542353 bam 529.1 MB
EGAF00002542354 bam 506.9 MB
EGAF00002542355 bam 436.2 MB
EGAF00002542356 bam 447.0 MB
EGAF00002542357 bam 518.5 MB
EGAF00002542358 bam 510.4 MB
EGAF00002542359 bam 384.8 MB
EGAF00002542360 bam 464.6 MB
EGAF00002542361 bam 490.3 MB
EGAF00002542362 bam 378.5 MB
EGAF00002542363 bam 92.3 MB
EGAF00002542364 bam 586.0 MB
EGAF00002542365 bam 616.4 MB
EGAF00002542366 bam 473.4 MB
EGAF00002542367 bam 420.8 MB
EGAF00002542368 bam 83.9 MB
EGAF00002542369 bam 62.0 MB
EGAF00002542370 bam 63.0 MB
EGAF00002542371 bam 410.9 MB
EGAF00002542372 bam 450.9 MB
EGAF00002542373 bam 501.9 MB
EGAF00002542374 bam 61.7 MB
EGAF00002542375 bam 336.6 MB
EGAF00002542376 bam 572.8 MB
EGAF00002542377 bam 507.5 MB
EGAF00002542378 bam 621.5 MB
EGAF00002542379 bam 100.6 MB
EGAF00002542380 bam 485.1 MB
EGAF00002542381 bam 496.6 MB
EGAF00002542382 bam 601.3 MB
EGAF00002542383 bam 715.5 MB
EGAF00002542384 bam 413.3 MB
EGAF00002542385 bam 535.0 MB
EGAF00002542386 bam 270.2 MB
EGAF00002542387 bam 3.7 GB
EGAF00002542388 bam 479.9 MB
EGAF00002542389 bam 500.2 MB
EGAF00002542390 bam 421.3 MB
EGAF00002542391 bam 465.3 MB
EGAF00002542392 bam 359.5 MB
EGAF00002542393 bam 442.6 MB
EGAF00002542394 bam 413.2 MB
EGAF00002542395 bam 457.8 MB
EGAF00002542396 bam 468.9 MB
EGAF00002542397 bam 434.8 MB
EGAF00002542398 bam 465.0 MB
EGAF00002542399 bam 571.2 MB
EGAF00002542400 bam 82.5 MB
EGAF00002542401 bam 68.7 MB
EGAF00002542402 bam 399.8 MB
EGAF00002542403 bam 607.1 MB
EGAF00002542404 bam 74.9 MB
EGAF00002542405 bam 77.9 MB
EGAF00002542406 bam 47.2 MB
EGAF00002542407 bam 469.5 MB
EGAF00002542408 bam 427.3 MB
EGAF00002542409 bam 83.8 MB
EGAF00002542410 bam 428.6 MB
EGAF00002542411 bam 517.4 MB
EGAF00002542412 bam 551.9 MB
EGAF00002542413 bam 82.1 MB
EGAF00002542414 bam 504.3 MB
68 Files (30.5 GB)